Wall clock time and date at job start Tue Mar 9 2021 13:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08998 * 112.85036 * 341.19151 * 3 2 1 5 5 C 1.53781 * 113.61553 * 112.49990 * 3 2 1 6 6 C 1.53781 * 87.08065 * 139.98009 * 5 3 2 7 7 H 1.09000 * 113.61313 * 89.11994 * 6 5 3 8 8 C 1.53002 * 113.68854 * 220.00614 * 6 5 3 9 9 N 1.46498 * 109.47406 * 272.53467 * 8 6 5 10 10 C 1.34770 * 120.00101 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00284 * 0.02562 * 10 9 8 12 12 C 1.50707 * 120.00111 * 180.02562 * 10 9 8 13 13 O 1.42901 * 109.47050 * 180.02562 * 12 10 9 14 14 C 1.35902 * 116.99671 * 180.02562 * 13 12 10 15 15 C 1.38730 * 120.05594 * 359.71625 * 14 13 12 16 16 C 1.38149 * 119.94223 * 179.74455 * 15 14 13 17 17 C 1.38265 * 120.05548 * 0.51548 * 16 15 14 18 18 C 1.50701 * 119.94560 * 179.74032 * 17 16 15 19 19 O 1.42898 * 109.47133 * 245.02196 * 18 17 16 20 20 Si 1.86302 * 109.46957 * 5.02188 * 18 17 16 21 21 C 1.38270 * 120.11060 * 359.76847 * 17 16 15 22 22 C 1.38144 * 120.05521 * 359.97133 * 21 17 16 23 23 C 1.53773 * 87.08173 * 334.56619 * 6 5 3 24 24 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 27 27 H 1.09000 * 113.61574 * 254.52629 * 5 3 2 28 28 H 1.09000 * 113.61270 * 25.42977 * 5 3 2 29 29 H 1.08998 * 109.47174 * 32.53979 * 8 6 5 30 30 H 1.09003 * 109.46753 * 152.53376 * 8 6 5 31 31 H 0.97005 * 119.99556 * 0.02562 * 9 8 6 32 32 H 1.08997 * 109.46853 * 299.99712 * 12 10 9 33 33 H 1.08995 * 109.47028 * 59.99924 * 12 10 9 34 34 H 1.07998 * 120.03208 * 0.02562 * 15 14 13 35 35 H 1.07995 * 119.97152 * 180.23456 * 16 15 14 36 36 H 1.08993 * 109.46916 * 125.02333 * 18 17 16 37 37 H 0.96705 * 114.00248 * 60.00119 * 19 18 17 38 38 H 1.48501 * 109.99906 * 179.97438 * 20 18 17 39 39 H 1.48501 * 110.00175 * 301.31855 * 20 18 17 40 40 H 1.07995 * 119.97150 * 179.97438 * 21 17 16 41 41 H 1.08003 * 120.02542 * 179.97438 * 22 21 17 42 42 H 1.08998 * 113.61839 * 270.88552 * 23 6 5 43 43 H 1.09002 * 113.68915 * 139.99099 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7534 1.6489 1.3018 6 6 3.8227 2.3181 0.4222 7 1 3.6222 3.3693 0.2150 8 6 5.2550 2.0693 0.8994 9 7 5.6265 3.0900 1.8824 10 6 6.8518 3.0709 2.4434 11 8 7.6471 2.2090 2.1341 12 6 7.2338 4.1206 3.4551 13 8 8.5719 3.8889 3.8997 14 6 9.0741 4.7525 4.8211 15 6 8.2970 5.8048 5.2832 16 6 8.8080 6.6782 6.2237 17 6 10.0964 6.5106 6.6965 18 6 10.6533 7.4683 7.7182 19 8 11.7422 8.1953 7.1456 20 14 9.3205 8.6586 8.2449 21 6 10.8750 5.4661 6.2332 22 6 10.3667 4.5868 5.2967 23 6 3.3756 1.3719 -0.7044 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 2.2140 2.3478 1.9411 28 1 3.1165 0.7740 1.8411 29 1 5.3188 1.0827 1.3582 30 1 5.9350 2.1192 0.0490 31 1 4.9905 3.7795 2.1296 32 1 7.1694 5.1074 2.9967 33 1 6.5540 4.0699 4.3056 34 1 7.2919 5.9384 4.9114 35 1 8.2021 7.4953 6.5865 36 1 11.0054 6.9100 8.5855 37 1 11.5013 8.7166 6.3675 38 1 9.8569 9.6081 9.2529 39 1 8.8098 9.4034 7.0661 40 1 11.8812 5.3375 6.6037 41 1 10.9754 3.7714 4.9348 42 1 3.9089 0.4212 -0.7136 43 1 3.3383 1.8457 -1.6853 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:32 Heat of formation + Delta-G solvation = -91.266558 kcal Electronic energy + Delta-G solvation = -24113.023782 eV Core-core repulsion = 20319.509352 eV Total energy + Delta-G solvation = -3793.514430 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57709 -40.87685 -40.19412 -39.02431 -37.47878 -37.21079 -35.37016 -32.43305 -31.77172 -30.57487 -28.41661 -27.27981 -26.64935 -26.15878 -24.09008 -23.25901 -22.37954 -21.78055 -20.53462 -19.49712 -18.64815 -18.24236 -17.56563 -17.48828 -17.10999 -16.79004 -16.57299 -16.32960 -16.19286 -16.03979 -15.78088 -15.55516 -15.27653 -14.78269 -14.62477 -14.36482 -14.25357 -13.75049 -13.58783 -13.51734 -13.42223 -13.39430 -12.87398 -12.44238 -12.30155 -12.12370 -12.06654 -11.96365 -11.71632 -11.59145 -11.41659 -11.00409 -10.57087 -10.41493 -10.21599 -10.03534 -9.24191 -4.89650 0.27450 0.31207 1.34500 1.43173 1.48282 1.61435 1.99149 2.58458 2.64884 2.89876 3.42273 3.46028 3.54285 3.65205 3.75206 3.82108 3.83966 3.85382 3.94526 4.04121 4.09441 4.12322 4.30731 4.31141 4.42930 4.47047 4.55170 4.55430 4.65591 4.70041 4.74113 4.82606 4.84122 4.87382 4.97630 5.02418 5.14096 5.16184 5.24130 5.25808 5.42357 5.49926 5.69951 6.26182 6.32631 6.46369 6.51520 7.11660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.052 3.948 4 H 0.107 0.893 5 C -0.148 4.148 6 C -0.105 4.105 7 H 0.127 0.873 8 C 0.134 3.866 9 N -0.706 5.706 10 C 0.509 3.491 11 O -0.578 6.578 12 C 0.038 3.962 13 O -0.321 6.321 14 C 0.121 3.879 15 C -0.200 4.200 16 C -0.077 4.077 17 C -0.158 4.158 18 C -0.083 4.083 19 O -0.552 6.552 20 Si 0.773 3.227 21 C -0.060 4.060 22 C -0.167 4.167 23 C -0.134 4.134 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.423 0.577 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.386 0.614 38 H -0.308 1.308 39 H -0.276 1.276 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 4.816 0.392 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.005 4.005 4 H 0.125 0.875 5 C -0.186 4.186 6 C -0.123 4.123 7 H 0.145 0.855 8 C 0.010 3.990 9 N -0.360 5.360 10 C 0.295 3.705 11 O -0.456 6.456 12 C -0.040 4.040 13 O -0.235 6.235 14 C 0.076 3.924 15 C -0.218 4.218 16 C -0.094 4.094 17 C -0.159 4.159 18 C -0.192 4.192 19 O -0.360 6.360 20 Si 0.678 3.322 21 C -0.078 4.078 22 C -0.186 4.186 23 C -0.172 4.172 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.261 0.739 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.138 0.862 37 H 0.235 0.765 38 H -0.237 1.237 39 H -0.202 1.202 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.821 4.390 0.589 9.870 hybrid contribution 0.517 0.476 -0.924 1.160 sum -8.304 4.866 -0.335 9.631 Atomic orbital electron populations 1.22931 0.79939 1.03468 1.00837 1.87929 1.21168 1.28787 1.94751 1.23912 0.94198 0.85195 0.97211 0.87549 1.23576 0.97177 1.00798 0.97046 1.22498 0.91735 1.01210 0.96907 0.85465 1.21298 0.95606 0.90968 0.91122 1.45646 1.14390 1.32593 1.43382 1.20624 0.82188 0.85652 0.81991 1.90773 1.51819 1.39692 1.63356 1.22751 0.83455 0.99139 0.98661 1.86133 1.30326 1.51207 1.55788 1.19224 0.93591 0.89936 0.89670 1.21500 1.02134 0.96207 1.01949 1.21104 0.94397 0.98778 0.95138 1.20282 0.95471 0.98635 1.01468 1.25251 0.97874 0.98708 0.97324 1.86575 1.35537 1.64735 1.49152 0.94081 0.80795 0.78539 0.78761 1.20922 0.99814 0.92609 0.94463 1.20627 0.94325 1.02629 1.01013 1.23244 0.95350 0.99925 0.98674 0.93077 0.89463 0.93000 0.89204 0.90677 0.92785 0.92081 0.73927 0.85527 0.85331 0.81708 0.83015 0.86185 0.76532 1.23667 1.20208 0.84871 0.85665 0.90344 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.41 -1.18 10.71 -148.98 -1.60 -2.78 16 3 C 0.05 -0.16 4.31 31.12 0.13 -0.02 16 4 H 0.11 -0.73 7.87 -2.39 -0.02 -0.75 16 5 C -0.15 0.77 7.47 31.12 0.23 1.00 16 6 C -0.10 0.74 3.75 -10.27 -0.04 0.70 16 7 H 0.13 -1.51 8.14 -2.39 -0.02 -1.53 16 8 C 0.13 -0.26 5.51 86.38 0.48 0.22 16 9 N -0.71 3.43 5.56 -463.05 -2.57 0.85 16 10 C 0.51 1.36 7.91 87.66 0.69 2.05 16 11 O -0.58 -8.84 16.50 15.99 0.26 -8.58 16 12 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 13 O -0.32 -1.87 9.67 -73.40 -0.71 -2.58 16 14 C 0.12 0.38 6.69 22.51 0.15 0.53 16 15 C -0.20 0.62 9.04 22.37 0.20 0.82 16 16 C -0.08 0.25 8.66 22.26 0.19 0.44 16 17 C -0.16 0.02 5.35 -19.85 -0.11 -0.08 16 18 C -0.08 0.07 2.80 71.24 0.20 0.27 16 19 O -0.55 -1.55 12.83 -148.98 -1.91 -3.46 16 20 Si 0.77 -2.69 29.88 68.60 2.05 -0.64 16 21 C -0.06 -0.16 9.68 22.25 0.22 0.05 16 22 C -0.17 -0.81 9.99 22.37 0.22 -0.59 16 23 C -0.13 0.46 7.47 31.12 0.23 0.69 16 24 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.05 -0.24 8.14 -2.38 -0.02 -0.26 16 27 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.07 -0.07 7.90 -2.39 -0.02 -0.09 16 29 H 0.05 0.14 7.85 -2.39 -0.02 0.12 16 30 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.42 -5.58 8.47 -92.70 -0.79 -6.37 16 32 H 0.13 -1.34 7.65 -2.39 -0.02 -1.36 16 33 H 0.13 -1.38 7.67 -2.39 -0.02 -1.40 16 34 H 0.17 -1.76 6.30 -2.91 -0.02 -1.78 16 35 H 0.15 -1.23 4.83 -2.91 -0.01 -1.24 16 36 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.39 -1.14 8.70 -74.05 -0.64 -1.79 16 38 H -0.31 -1.56 7.11 99.48 0.71 -0.85 16 39 H -0.28 0.28 7.01 99.48 0.70 0.98 16 40 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.08 0.02 8.10 -2.39 -0.02 0.00 16 43 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: 0.00 -26.70 360.37 -0.44 -27.14 By element: Atomic # 1 Polarization: -17.08 SS G_CDS: -0.37 Total: -17.45 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.41 Total: 7.49 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -2.57 Total: 0.85 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -3.95 Total: -17.40 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.05 Total: -0.64 kcal Total: -26.70 -0.44 -27.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.124 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds