Wall clock time and date at job start Tue Mar 9 2021 13:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99517 * 2 1 4 4 H 1.09001 * 112.85691 * 18.80725 * 3 2 1 5 5 C 1.53788 * 113.61061 * 150.00411 * 3 2 1 6 6 C 1.53772 * 87.08197 * 139.97920 * 5 3 2 7 7 H 1.09002 * 113.61797 * 89.20134 * 6 5 3 8 8 C 1.53000 * 113.61476 * 220.01375 * 6 5 3 9 9 N 1.46499 * 109.47292 * 185.00074 * 8 6 5 10 10 C 1.34774 * 120.00318 * 180.02562 * 9 8 6 11 11 O 1.21612 * 119.99891 * 0.02562 * 10 9 8 12 12 C 1.47375 * 120.00388 * 179.97438 * 10 9 8 13 13 C 1.36417 * 127.19706 * 180.02562 * 12 10 9 14 14 C 1.50706 * 125.79764 * 359.95947 * 13 12 10 15 15 O 1.42906 * 109.46702 * 89.99918 * 14 13 12 16 16 C 1.35903 * 116.99522 * 179.97438 * 15 14 13 17 17 C 1.38725 * 120.05861 * 359.72783 * 16 15 14 18 18 C 1.38145 * 119.94387 * 179.74053 * 17 16 15 19 19 C 1.38270 * 120.05488 * 0.51442 * 18 17 16 20 20 C 1.50696 * 119.94227 * 179.74316 * 19 18 17 21 21 O 1.42901 * 109.46966 * 245.01571 * 20 19 18 22 22 Si 1.86294 * 109.47511 * 5.02176 * 20 19 18 23 23 C 1.38269 * 120.11023 * 359.75936 * 19 18 17 24 24 C 1.38139 * 120.05370 * 359.97438 * 23 19 18 25 25 O 1.33648 * 108.39909 * 180.22625 * 13 12 10 26 26 C 1.34214 * 110.91030 * 359.59195 * 25 13 12 27 27 C 1.34179 * 109.12337 * 0.41210 * 26 25 13 28 28 C 1.53775 * 87.08513 * 334.56816 * 6 5 3 29 29 H 1.09003 * 109.46783 * 60.00035 * 1 2 3 30 30 H 1.09005 * 109.46716 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46662 * 299.99846 * 1 2 3 32 32 H 1.08996 * 113.61166 * 25.43060 * 5 3 2 33 33 H 1.09002 * 113.61102 * 254.52936 * 5 3 2 34 34 H 1.09001 * 109.46863 * 65.00397 * 8 6 5 35 35 H 1.08994 * 109.47468 * 305.00201 * 8 6 5 36 36 H 0.97001 * 120.00057 * 0.02562 * 9 8 6 37 37 H 1.09000 * 109.47318 * 209.99497 * 14 13 12 38 38 H 1.09000 * 109.47161 * 330.00128 * 14 13 12 39 39 H 1.08000 * 120.02603 * 359.97438 * 17 16 15 40 40 H 1.08002 * 119.97017 * 180.23008 * 18 17 16 41 41 H 1.09006 * 109.46939 * 125.01828 * 20 19 18 42 42 H 0.96703 * 113.99584 * 60.00659 * 21 20 19 43 43 H 1.48497 * 110.00233 * 180.02562 * 22 20 19 44 44 H 1.48508 * 110.00036 * 301.31705 * 22 20 19 45 45 H 1.07997 * 119.96991 * 179.97438 * 23 19 18 46 46 H 1.08006 * 120.02293 * 179.97438 * 24 23 19 47 47 H 1.08001 * 125.43646 * 180.19219 * 26 25 13 48 48 H 1.07997 * 127.02597 * 179.75533 * 27 26 25 49 49 H 1.09003 * 113.62027 * 139.98114 * 28 6 5 50 50 H 1.08998 * 113.61364 * 270.88459 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3756 1.3719 0.7045 6 6 3.8227 2.3181 -0.4222 7 1 3.6236 3.3695 -0.2143 8 6 5.2543 2.0681 -0.9006 9 7 5.6260 3.0888 -1.8836 10 6 6.8504 3.0682 -2.4463 11 8 7.6466 2.2020 -2.1385 12 6 7.2242 4.0946 -3.4356 13 6 8.4141 4.2125 -4.0923 14 6 9.6032 3.3006 -3.9326 15 8 9.5103 2.2279 -4.8722 16 6 10.5118 1.3092 -4.8606 17 6 11.5650 1.4407 -3.9673 18 6 12.5790 0.5026 -3.9539 19 6 12.5502 -0.5609 -4.8371 20 6 13.6606 -1.5796 -4.8242 21 8 14.3741 -1.5221 -6.0610 22 14 14.8252 -1.2112 -3.4176 23 6 11.5044 -0.6911 -5.7322 24 6 10.4853 0.2413 -5.7458 25 8 8.3480 5.2776 -4.8970 26 6 7.1482 5.8722 -4.8070 27 6 6.3924 5.2055 -3.9213 28 6 2.7534 1.6490 -1.3017 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 3.9088 0.4213 0.7136 33 1 3.3384 1.8471 1.6848 34 1 5.3167 1.0816 -1.3599 35 1 5.9351 2.1170 -0.0509 36 1 4.9909 3.7795 -2.1294 37 1 10.5193 3.8631 -4.1129 38 1 9.6181 2.8968 -2.9203 39 1 11.5903 2.2737 -3.2804 40 1 13.3973 0.6025 -3.2562 41 1 13.2381 -2.5760 -4.6945 42 1 14.7778 -0.6623 -6.2425 43 1 15.9252 -2.2084 -3.3944 44 1 15.3837 0.1569 -3.5657 45 1 11.4844 -1.5224 -6.4213 46 1 9.6689 0.1394 -6.4455 47 1 6.8414 6.7497 -5.3570 48 1 5.3800 5.4374 -3.6254 49 1 2.2140 2.3478 -1.9411 50 1 3.1166 0.7742 -1.8410 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:52 Heat of formation + Delta-G solvation = -70.951641 kcal Electronic energy + Delta-G solvation = -32993.157398 eV Core-core repulsion = 28341.625657 eV Total energy + Delta-G solvation = -4651.531741 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.72118 -41.31882 -40.94933 -40.10379 -39.27084 -37.46966 -37.31060 -35.38235 -34.06366 -32.86263 -32.00346 -31.41508 -29.55181 -27.86656 -27.32191 -26.66651 -26.18298 -24.65328 -23.82458 -23.22748 -22.41940 -22.02217 -21.28364 -20.39861 -19.52999 -19.17869 -18.38365 -17.82578 -17.41705 -17.24847 -17.05476 -16.94422 -16.70235 -16.58292 -16.41424 -16.27559 -16.09610 -15.90966 -15.71849 -15.48597 -15.14107 -14.73431 -14.57977 -14.39792 -14.22414 -14.18904 -13.84868 -13.64554 -13.56733 -13.47147 -13.42653 -13.10909 -12.87272 -12.44704 -12.34034 -12.16182 -12.08829 -11.95730 -11.70891 -11.62898 -11.41998 -11.13364 -10.97256 -10.59468 -10.41798 -10.18778 -10.07128 -9.82814 -9.27296 -4.91618 -0.04219 0.24647 0.27683 1.03483 1.31765 1.51127 1.58558 1.94237 2.05606 2.12288 2.46585 2.61732 2.89315 3.33927 3.43873 3.45706 3.56057 3.64175 3.67669 3.73950 3.77792 3.82391 3.85128 3.89058 3.92582 4.10117 4.13137 4.27307 4.30795 4.40336 4.45473 4.47192 4.53364 4.54889 4.58088 4.67485 4.67604 4.75760 4.80160 4.82256 4.84137 4.87157 4.93720 5.01983 5.12400 5.14257 5.23292 5.24529 5.28667 5.43350 5.45361 5.66864 5.88294 6.23925 6.32233 6.44382 6.49540 7.10581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.054 3.946 4 H 0.107 0.893 5 C -0.130 4.130 6 C -0.107 4.107 7 H 0.124 0.876 8 C 0.135 3.865 9 N -0.704 5.704 10 C 0.580 3.420 11 O -0.573 6.573 12 C -0.223 4.223 13 C 0.039 3.961 14 C 0.135 3.865 15 O -0.323 6.323 16 C 0.124 3.876 17 C -0.206 4.206 18 C -0.077 4.077 19 C -0.157 4.157 20 C -0.078 4.078 21 O -0.549 6.549 22 Si 0.763 3.237 23 C -0.057 4.057 24 C -0.163 4.163 25 O -0.178 6.178 26 C -0.013 4.013 27 C -0.196 4.196 28 C -0.150 4.150 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.416 0.584 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.385 0.615 43 H -0.302 1.302 44 H -0.279 1.279 45 H 0.140 0.860 46 H 0.133 0.867 47 H 0.252 0.748 48 H 0.193 0.807 49 H 0.085 0.915 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 7.072 3.021 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.004 4.004 4 H 0.124 0.876 5 C -0.168 4.168 6 C -0.125 4.125 7 H 0.142 0.858 8 C 0.011 3.989 9 N -0.356 5.356 10 C 0.369 3.631 11 O -0.454 6.454 12 C -0.227 4.227 13 C -0.014 4.014 14 C 0.061 3.939 15 O -0.237 6.237 16 C 0.079 3.921 17 C -0.224 4.224 18 C -0.095 4.095 19 C -0.158 4.158 20 C -0.187 4.187 21 O -0.357 6.357 22 Si 0.669 3.331 23 C -0.075 4.075 24 C -0.182 4.182 25 O -0.074 6.074 26 C -0.078 4.078 27 C -0.215 4.215 28 C -0.188 4.188 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.141 0.859 42 H 0.235 0.765 43 H -0.230 1.230 44 H -0.206 1.206 45 H 0.158 0.842 46 H 0.151 0.849 47 H 0.268 0.732 48 H 0.210 0.790 49 H 0.104 0.896 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.961 5.989 3.151 8.391 hybrid contribution -0.322 0.858 -1.127 1.452 sum -5.283 6.847 2.024 8.882 Atomic orbital electron populations 1.22933 0.79957 1.03487 1.00806 1.87930 1.21151 1.28710 1.94733 1.23899 0.94275 0.85211 0.96991 0.87560 1.23222 0.95139 0.99885 0.98555 1.22501 0.91860 1.01126 0.97058 0.85767 1.21323 0.95669 0.90779 0.91089 1.45636 1.14504 1.32231 1.43250 1.17459 0.82287 0.83326 0.80078 1.90779 1.51675 1.38836 1.64123 1.21388 0.95752 1.01095 1.04503 1.22045 0.96712 0.89394 0.93259 1.21152 0.93741 0.84766 0.94287 1.86050 1.45036 1.35538 1.57114 1.19191 0.87543 0.89652 0.95674 1.21409 0.95697 1.03234 1.02059 1.21054 0.98174 0.92787 0.97461 1.20275 0.98289 0.98197 0.99029 1.25159 0.96563 1.01928 0.95005 1.86567 1.71217 1.39393 1.38523 0.94038 0.78510 0.76583 0.84011 1.20960 0.91659 0.97711 0.97184 1.20632 1.01666 0.94620 1.01249 1.83790 1.36399 1.34657 1.52533 1.24921 0.81019 1.00601 1.01274 1.23261 1.02510 0.95068 1.00622 1.23582 0.97346 1.00720 0.97163 0.93233 0.89399 0.92912 0.90111 0.89266 0.92753 0.91516 0.74693 0.88244 0.87354 0.83476 0.83407 0.85863 0.76535 1.22986 1.20575 0.84193 0.84929 0.73187 0.78959 0.89631 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.41 -1.48 10.71 -148.98 -1.60 -3.07 16 3 C 0.05 -0.11 4.31 31.12 0.13 0.03 16 4 H 0.11 -0.62 7.87 -2.39 -0.02 -0.64 16 5 C -0.13 0.36 7.47 31.12 0.23 0.59 16 6 C -0.11 0.56 3.75 -10.27 -0.04 0.53 16 7 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 8 C 0.13 -0.02 5.51 86.38 0.48 0.45 16 9 N -0.70 0.40 5.55 -466.43 -2.59 -2.19 16 10 C 0.58 3.81 7.81 86.65 0.68 4.48 16 11 O -0.57 -7.97 14.85 -4.07 -0.06 -8.03 16 12 C -0.22 -0.87 6.31 -18.99 -0.12 -0.99 16 13 C 0.04 0.21 7.00 25.26 0.18 0.39 16 14 C 0.13 0.74 4.74 71.24 0.34 1.07 16 15 O -0.32 -3.24 10.12 -92.46 -0.94 -4.18 16 16 C 0.12 1.02 6.69 22.50 0.15 1.17 16 17 C -0.21 -0.89 9.04 22.36 0.20 -0.69 16 18 C -0.08 -0.18 8.66 22.26 0.19 0.01 16 19 C -0.16 -0.52 5.35 -19.85 -0.11 -0.62 16 20 C -0.08 -0.13 2.80 71.23 0.20 0.07 16 21 O -0.55 -2.44 12.83 -148.98 -1.91 -4.35 16 22 Si 0.76 -0.18 29.88 68.60 2.05 1.87 16 23 C -0.06 -0.28 9.68 22.25 0.22 -0.07 16 24 C -0.16 -1.19 9.99 22.36 0.22 -0.97 16 25 O -0.18 -0.50 10.52 4.52 0.05 -0.45 16 26 C -0.01 0.06 12.03 66.89 0.80 0.86 16 27 C -0.20 0.76 10.60 23.65 0.25 1.01 16 28 C -0.15 0.48 7.46 31.12 0.23 0.71 16 29 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 31 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.08 0.04 8.10 -2.39 -0.02 0.02 16 33 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.05 0.23 7.84 -2.39 -0.02 0.21 16 35 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.42 -2.92 7.64 -92.71 -0.71 -3.63 16 37 H 0.10 0.07 7.65 -2.39 -0.02 0.05 16 38 H 0.11 0.70 6.02 -2.39 -0.01 0.68 16 39 H 0.15 0.04 6.30 -2.91 -0.02 0.02 16 40 H 0.15 -0.32 4.83 -2.91 -0.01 -0.33 16 41 H 0.12 0.02 7.96 -2.38 -0.02 0.00 16 42 H 0.39 -0.44 8.70 -74.06 -0.64 -1.09 16 43 H -0.30 -2.18 7.11 99.48 0.71 -1.48 16 44 H -0.28 -0.78 7.01 99.48 0.70 -0.09 16 45 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 46 H 0.13 0.81 8.06 -2.91 -0.02 0.79 16 47 H 0.25 -3.41 8.06 -2.91 -0.02 -3.43 16 48 H 0.19 -2.19 7.74 -2.91 -0.02 -2.21 16 49 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.07 0.09 7.90 -2.39 -0.02 0.07 16 Total: 0.00 -24.83 418.36 0.14 -24.69 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.34 Total: -13.52 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.47 Total: 9.23 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -2.59 Total: -2.19 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -4.46 Total: -20.09 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.05 Total: 1.87 kcal Total: -24.83 0.14 -24.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.261 kcal (2) G-P(sol) polarization free energy of solvation -24.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds