Wall clock time and date at job start Tue Mar 9 2021 13:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.08993 * 112.90736 * 341.24804 * 3 2 1 5 5 C 1.53962 * 113.66723 * 112.55150 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88843 * 5 3 2 7 7 H 1.08996 * 113.68722 * 89.19879 * 6 5 3 8 8 C 1.53003 * 113.61259 * 220.08801 * 6 5 3 9 9 N 1.46493 * 109.47111 * 272.50057 * 8 6 5 10 10 C 1.34777 * 119.99981 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99917 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.99857 * 179.97438 * 10 9 8 13 13 O 1.42904 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.35902 * 116.99801 * 180.02562 * 13 12 10 15 15 C 1.38715 * 120.05061 * 179.97438 * 14 13 12 16 16 C 1.38167 * 119.93847 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.97103 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47191 * 65.00126 * 17 16 15 19 19 Si 1.86295 * 109.47294 * 184.99973 * 17 16 15 20 20 C 1.38244 * 120.05699 * 0.02562 * 16 15 14 21 21 C 1.38284 * 120.11123 * 0.02562 * 20 16 15 22 22 C 1.38120 * 120.05913 * 359.68330 * 21 20 16 23 23 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 24 24 H 1.08998 * 109.46809 * 299.99633 * 1 2 3 25 25 H 1.08997 * 109.47166 * 60.00208 * 1 2 3 26 26 H 1.09001 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08997 * 113.53543 * 25.33518 * 5 3 2 28 28 H 1.08998 * 113.73879 * 254.47115 * 5 3 2 29 29 H 1.08994 * 109.47052 * 32.49864 * 8 6 5 30 30 H 1.09002 * 109.46569 * 152.49796 * 8 6 5 31 31 H 0.97001 * 120.00454 * 359.97438 * 9 8 6 32 32 H 1.08994 * 109.47266 * 299.99773 * 12 10 9 33 33 H 1.08995 * 109.47440 * 59.99993 * 12 10 9 34 34 H 1.07992 * 120.03173 * 359.97438 * 15 14 13 35 35 H 1.09003 * 109.47546 * 305.00627 * 17 16 15 36 36 H 0.96700 * 114.00597 * 180.02562 * 18 17 16 37 37 H 1.48501 * 109.99836 * 178.68076 * 19 17 16 38 38 H 1.48498 * 110.00122 * 300.00200 * 19 17 16 39 39 H 1.08001 * 119.93951 * 180.02562 * 20 16 15 40 40 H 1.08005 * 119.97181 * 179.97438 * 21 20 16 41 41 H 1.07998 * 120.03237 * 180.32426 * 22 21 20 42 42 H 1.09002 * 113.61445 * 139.98212 * 23 6 5 43 43 H 1.09002 * 113.61408 * 270.79943 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7556 1.6501 1.3023 6 6 3.8253 2.3175 0.4218 7 1 3.6278 3.3690 0.2140 8 6 5.2569 2.0649 0.8991 9 7 5.6311 3.0849 1.8817 10 6 6.8564 3.0627 2.4427 11 8 7.6489 2.1980 2.1344 12 6 7.2416 4.1124 3.4531 13 8 8.5790 3.8771 3.8981 14 6 9.0839 4.7403 4.8184 15 6 10.3757 4.5708 5.2945 16 6 10.8868 5.4501 6.2298 17 6 12.2903 5.2669 6.7471 18 8 13.2205 5.4604 5.6797 19 14 12.6230 6.5105 8.0938 20 6 10.1118 6.4977 6.6913 21 6 8.8234 6.6682 6.2189 22 6 8.3098 5.7955 5.2795 23 6 3.3756 1.3719 -0.7045 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1177 0.7747 1.8413 28 1 2.2189 2.3497 1.9431 29 1 5.3179 1.0783 1.3584 30 1 5.9371 2.1125 0.0487 31 1 4.9975 3.7768 2.1280 32 1 7.1803 5.0989 2.9936 33 1 6.5617 4.0650 4.3036 34 1 10.9813 3.7523 4.9346 35 1 12.4014 4.2592 7.1476 36 1 14.1459 5.3571 5.9407 37 1 13.9929 6.3195 8.6342 38 1 12.4749 7.8885 7.5605 39 1 10.5134 7.1841 7.4220 40 1 8.2198 7.4872 6.5813 41 1 7.3054 5.9321 4.9070 42 1 3.3385 1.8471 -1.6848 43 1 3.9083 0.4209 -0.7150 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12345242_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:10 Heat of formation + Delta-G solvation = -87.857509 kcal Electronic energy + Delta-G solvation = -24144.503171 eV Core-core repulsion = 20351.136569 eV Total energy + Delta-G solvation = -3793.366602 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51163 -40.89423 -40.15512 -38.83773 -37.51254 -37.30138 -35.30444 -32.58309 -31.80067 -30.26677 -28.39444 -27.35648 -26.82122 -26.62972 -23.62850 -23.51538 -22.39691 -21.59935 -20.62942 -19.12559 -18.52791 -18.49684 -17.63362 -17.47549 -17.39511 -16.99287 -16.69141 -16.55008 -16.26035 -15.86580 -15.77743 -15.49107 -15.24262 -14.63750 -14.52589 -14.27301 -14.02082 -13.74251 -13.66876 -13.53851 -13.53116 -13.29524 -12.96335 -12.59735 -12.46087 -12.14403 -12.07989 -11.96318 -11.83042 -11.64273 -11.55028 -10.86522 -10.51347 -10.50274 -10.17817 -9.88113 -9.22266 -4.95775 0.23622 0.45082 1.25447 1.47741 1.51561 1.60550 1.95627 2.55136 2.65996 2.77575 3.31879 3.35946 3.41897 3.56049 3.66799 3.69491 3.76788 3.80752 3.90651 3.91126 3.97436 4.06941 4.14650 4.23730 4.26172 4.34773 4.40281 4.54143 4.58247 4.60504 4.63931 4.70760 4.72942 4.76500 4.87868 5.00570 5.01511 5.15075 5.26305 5.32659 5.38580 5.50130 5.67691 6.20658 6.25512 6.40366 6.45113 7.10595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.124 4.124 7 H 0.100 0.900 8 C 0.133 3.867 9 N -0.727 5.727 10 C 0.514 3.486 11 O -0.512 6.512 12 C 0.041 3.959 13 O -0.288 6.288 14 C 0.129 3.871 15 C -0.119 4.119 16 C -0.033 4.033 17 C -0.079 4.079 18 O -0.534 6.534 19 Si 0.689 3.311 20 C -0.152 4.152 21 C -0.073 4.073 22 C -0.206 4.206 23 C -0.127 4.127 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.381 0.619 37 H -0.261 1.261 38 H -0.255 1.255 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 3.369 2.582 7.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.107 0.893 5 C -0.189 4.189 6 C -0.143 4.143 7 H 0.119 0.881 8 C 0.010 3.990 9 N -0.381 5.381 10 C 0.299 3.701 11 O -0.386 6.386 12 C -0.038 4.038 13 O -0.201 6.201 14 C 0.083 3.917 15 C -0.138 4.138 16 C -0.033 4.033 17 C -0.189 4.189 18 O -0.342 6.342 19 Si 0.590 3.410 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.225 4.225 23 C -0.165 4.165 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.236 0.764 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.229 0.771 37 H -0.186 1.186 38 H -0.180 1.180 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.096 0.904 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.526 3.141 2.188 6.723 hybrid contribution 0.166 0.456 -0.582 0.758 sum -5.361 3.597 1.606 6.653 Atomic orbital electron populations 1.22818 0.80900 1.03062 0.99987 1.87966 1.19880 1.27117 1.94536 1.23717 0.93908 0.85575 0.96621 0.89332 1.23665 0.97038 1.01061 0.97131 1.22570 0.93568 1.00149 0.98028 0.88138 1.21374 0.94489 0.91537 0.91555 1.45798 1.15038 1.32618 1.44656 1.20040 0.82119 0.85991 0.81988 1.90796 1.49936 1.36829 1.60997 1.22457 0.84441 0.98851 0.98029 1.86172 1.28290 1.50185 1.55433 1.19008 0.93294 0.89566 0.89795 1.20250 0.92999 1.01840 0.98723 1.19023 0.93557 0.94555 0.96200 1.24866 0.88514 1.08146 0.97337 1.86605 1.19059 1.93843 1.34656 0.94957 0.84989 0.78591 0.82452 1.20924 0.95290 0.98361 1.02382 1.20874 0.94910 0.98095 0.95183 1.21283 1.00952 0.97511 1.02734 1.23213 0.95335 1.00255 0.97685 0.93954 0.93903 0.89491 0.88786 0.91018 0.90736 0.90822 0.76360 0.88794 0.88705 0.84761 0.90311 0.77143 1.18642 1.17971 0.85300 0.85008 0.85208 0.90376 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.53 10.72 -35.23 -0.38 -0.91 16 3 C 0.06 -0.06 4.32 -25.82 -0.11 -0.17 16 4 H 0.09 -0.21 7.87 -51.93 -0.41 -0.62 16 5 C -0.15 0.30 7.47 -25.82 -0.19 0.11 16 6 C -0.12 0.34 3.76 -89.80 -0.34 0.01 16 7 H 0.10 -0.42 8.14 -51.93 -0.42 -0.84 16 8 C 0.13 -0.11 5.51 -4.04 -0.02 -0.14 16 9 N -0.73 1.12 5.56 -60.30 -0.33 0.79 16 10 C 0.51 0.96 7.91 -10.98 -0.09 0.87 16 11 O -0.51 -3.66 16.50 -14.35 -0.24 -3.90 16 12 C 0.04 -0.02 5.22 36.01 0.19 0.17 16 13 O -0.29 -1.08 9.67 -39.34 -0.38 -1.46 16 14 C 0.13 0.36 6.69 -39.21 -0.26 0.10 16 15 C -0.12 -0.41 9.63 -39.43 -0.38 -0.79 16 16 C -0.03 -0.07 5.38 -104.65 -0.56 -0.63 16 17 C -0.08 -0.06 2.79 36.00 0.10 0.04 16 18 O -0.53 -1.14 12.81 -35.23 -0.45 -1.59 16 19 Si 0.69 -0.44 29.85 -169.99 -5.07 -5.51 16 20 C -0.15 -0.12 8.67 -39.56 -0.34 -0.47 16 21 C -0.07 0.01 10.04 -39.61 -0.40 -0.39 16 22 C -0.21 -0.07 9.04 -39.43 -0.36 -0.42 16 23 C -0.13 0.20 7.47 -25.92 -0.19 0.00 16 24 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 27 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 28 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 29 H 0.07 0.04 7.84 -51.93 -0.41 -0.36 16 30 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.40 -1.96 8.47 -40.82 -0.35 -2.31 16 32 H 0.09 -0.28 7.65 -51.93 -0.40 -0.68 16 33 H 0.10 -0.30 7.67 -51.93 -0.40 -0.70 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.38 -0.77 8.74 45.56 0.40 -0.38 16 37 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 38 H -0.26 -0.59 7.05 56.52 0.40 -0.19 16 39 H 0.13 -0.12 4.86 -52.49 -0.26 -0.38 16 40 H 0.13 -0.35 8.06 -52.48 -0.42 -0.77 16 41 H 0.13 -0.33 6.30 -52.49 -0.33 -0.66 16 42 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 43 H 0.10 -0.05 8.10 -51.93 -0.42 -0.47 16 LS Contribution 360.46 15.07 5.43 5.43 Total: 0.00 -10.50 360.46 -9.68 -20.18 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: -6.40 Total: -12.39 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.86 Total: -0.65 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -0.33 Total: 0.79 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.45 Total: -7.85 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: -5.07 Total: -5.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -10.50 -9.68 -20.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.677 kcal (2) G-P(sol) polarization free energy of solvation -10.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds