Wall clock time and date at job start Tue Mar 9 2021 13:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.08993 * 112.90736 * 341.24804 * 3 2 1 5 5 C 1.53962 * 113.66723 * 112.55150 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88843 * 5 3 2 7 7 H 1.08996 * 113.68722 * 89.19879 * 6 5 3 8 8 C 1.53003 * 113.61259 * 220.08801 * 6 5 3 9 9 N 1.46493 * 109.47111 * 272.50057 * 8 6 5 10 10 C 1.34777 * 119.99981 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99917 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.99857 * 179.97438 * 10 9 8 13 13 O 1.42904 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.35902 * 116.99801 * 180.02562 * 13 12 10 15 15 C 1.38715 * 120.05061 * 179.97438 * 14 13 12 16 16 C 1.38167 * 119.93847 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.97103 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47191 * 65.00126 * 17 16 15 19 19 Si 1.86295 * 109.47294 * 184.99973 * 17 16 15 20 20 C 1.38244 * 120.05699 * 0.02562 * 16 15 14 21 21 C 1.38284 * 120.11123 * 0.02562 * 20 16 15 22 22 C 1.38120 * 120.05913 * 359.68330 * 21 20 16 23 23 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 24 24 H 1.08998 * 109.46809 * 299.99633 * 1 2 3 25 25 H 1.08997 * 109.47166 * 60.00208 * 1 2 3 26 26 H 1.09001 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08997 * 113.53543 * 25.33518 * 5 3 2 28 28 H 1.08998 * 113.73879 * 254.47115 * 5 3 2 29 29 H 1.08994 * 109.47052 * 32.49864 * 8 6 5 30 30 H 1.09002 * 109.46569 * 152.49796 * 8 6 5 31 31 H 0.97001 * 120.00454 * 359.97438 * 9 8 6 32 32 H 1.08994 * 109.47266 * 299.99773 * 12 10 9 33 33 H 1.08995 * 109.47440 * 59.99993 * 12 10 9 34 34 H 1.07992 * 120.03173 * 359.97438 * 15 14 13 35 35 H 1.09003 * 109.47546 * 305.00627 * 17 16 15 36 36 H 0.96700 * 114.00597 * 180.02562 * 18 17 16 37 37 H 1.48501 * 109.99836 * 178.68076 * 19 17 16 38 38 H 1.48498 * 110.00122 * 300.00200 * 19 17 16 39 39 H 1.08001 * 119.93951 * 180.02562 * 20 16 15 40 40 H 1.08005 * 119.97181 * 179.97438 * 21 20 16 41 41 H 1.07998 * 120.03237 * 180.32426 * 22 21 20 42 42 H 1.09002 * 113.61445 * 139.98212 * 23 6 5 43 43 H 1.09002 * 113.61408 * 270.79943 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7556 1.6501 1.3023 6 6 3.8253 2.3175 0.4218 7 1 3.6278 3.3690 0.2140 8 6 5.2569 2.0649 0.8991 9 7 5.6311 3.0849 1.8817 10 6 6.8564 3.0627 2.4427 11 8 7.6489 2.1980 2.1344 12 6 7.2416 4.1124 3.4531 13 8 8.5790 3.8771 3.8981 14 6 9.0839 4.7403 4.8184 15 6 10.3757 4.5708 5.2945 16 6 10.8868 5.4501 6.2298 17 6 12.2903 5.2669 6.7471 18 8 13.2205 5.4604 5.6797 19 14 12.6230 6.5105 8.0938 20 6 10.1118 6.4977 6.6913 21 6 8.8234 6.6682 6.2189 22 6 8.3098 5.7955 5.2795 23 6 3.3756 1.3719 -0.7045 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1177 0.7747 1.8413 28 1 2.2189 2.3497 1.9431 29 1 5.3179 1.0783 1.3584 30 1 5.9371 2.1125 0.0487 31 1 4.9975 3.7768 2.1280 32 1 7.1803 5.0989 2.9936 33 1 6.5617 4.0650 4.3036 34 1 10.9813 3.7523 4.9346 35 1 12.4014 4.2592 7.1476 36 1 14.1459 5.3571 5.9407 37 1 13.9929 6.3195 8.6342 38 1 12.4749 7.8885 7.5605 39 1 10.5134 7.1841 7.4220 40 1 8.2198 7.4872 6.5813 41 1 7.3054 5.9321 4.9070 42 1 3.3385 1.8471 -1.6848 43 1 3.9083 0.4209 -0.7150 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:09 Heat of formation + Delta-G solvation = -90.385655 kcal Electronic energy + Delta-G solvation = -24144.612800 eV Core-core repulsion = 20351.136569 eV Total energy + Delta-G solvation = -3793.476231 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57975 -40.87296 -40.18690 -38.91915 -37.52072 -37.35930 -35.38576 -32.61040 -31.83386 -30.29105 -28.32259 -27.28591 -26.76393 -26.58555 -23.66847 -23.44460 -22.44948 -21.63356 -20.52849 -19.15680 -18.60518 -18.51146 -17.61417 -17.49962 -17.41875 -17.06347 -16.61819 -16.51948 -16.22247 -15.87466 -15.79518 -15.54968 -15.25204 -14.70983 -14.54007 -14.28163 -14.12796 -13.78265 -13.63608 -13.54546 -13.42789 -13.29596 -12.88480 -12.53088 -12.44660 -12.14629 -12.02088 -11.95436 -11.73236 -11.68700 -11.42694 -11.02501 -10.55549 -10.42087 -10.23404 -9.92192 -9.29032 -4.92042 0.19906 0.38807 1.26267 1.40960 1.48165 1.61757 1.94269 2.56218 2.63075 2.88996 3.37343 3.41960 3.53510 3.65032 3.79072 3.81383 3.83154 3.85533 4.00458 4.07211 4.11258 4.13067 4.25228 4.27017 4.29653 4.46427 4.48202 4.54781 4.63835 4.65457 4.72693 4.81585 4.83253 4.86659 4.97282 5.01436 5.12990 5.22349 5.23413 5.36072 5.41061 5.46214 5.68207 6.26260 6.31965 6.45045 6.55084 7.09664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.053 3.947 4 H 0.107 0.893 5 C -0.148 4.148 6 C -0.105 4.105 7 H 0.127 0.873 8 C 0.133 3.867 9 N -0.705 5.705 10 C 0.509 3.491 11 O -0.578 6.578 12 C 0.038 3.962 13 O -0.324 6.324 14 C 0.113 3.887 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.099 4.099 18 O -0.561 6.561 19 Si 0.783 3.217 20 C -0.161 4.161 21 C -0.070 4.070 22 C -0.201 4.201 23 C -0.134 4.134 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.423 0.577 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.395 0.605 37 H -0.287 1.287 38 H -0.292 1.292 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.087 0.913 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 5.741 3.482 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.005 4.005 4 H 0.125 0.875 5 C -0.186 4.186 6 C -0.124 4.124 7 H 0.145 0.855 8 C 0.010 3.990 9 N -0.360 5.360 10 C 0.296 3.704 11 O -0.457 6.457 12 C -0.039 4.039 13 O -0.237 6.237 14 C 0.068 3.932 15 C -0.170 4.170 16 C -0.048 4.048 17 C -0.206 4.206 18 O -0.371 6.371 19 Si 0.687 3.313 20 C -0.178 4.178 21 C -0.087 4.087 22 C -0.220 4.220 23 C -0.172 4.172 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.261 0.739 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.245 0.755 37 H -0.214 1.214 38 H -0.220 1.220 39 H 0.163 0.837 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.105 0.895 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.621 5.519 3.089 9.904 hybrid contribution 0.778 -0.302 -0.916 1.239 sum -6.843 5.217 2.173 8.875 Atomic orbital electron populations 1.22931 0.79918 1.03481 1.00849 1.87929 1.21192 1.28749 1.94739 1.23933 0.94182 0.85209 0.97152 0.87502 1.23607 0.97158 1.00785 0.97054 1.22500 0.91677 1.01237 0.96967 0.85459 1.21305 0.95642 0.90961 0.91100 1.45641 1.14407 1.32504 1.43418 1.20616 0.82202 0.85653 0.81974 1.90769 1.52002 1.39538 1.63346 1.22739 0.83420 0.99099 0.98657 1.86122 1.30423 1.51218 1.55975 1.19179 0.93431 0.90444 0.90114 1.20310 0.93926 1.02335 1.00414 1.19263 0.94378 0.94889 0.96246 1.25268 0.87926 1.09842 0.97591 1.86557 1.20404 1.94035 1.36080 0.93917 0.82618 0.74694 0.80034 1.21212 0.95897 0.98015 1.02689 1.21324 0.94664 0.98473 0.94287 1.21644 1.02031 0.96156 1.02143 1.23242 0.95349 0.99910 0.98667 0.93067 0.92988 0.89444 0.90710 0.89194 0.92774 0.92120 0.73920 0.85647 0.85358 0.86941 0.89318 0.75494 1.21436 1.21958 0.83738 0.81726 0.81828 0.89453 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.41 -1.36 10.72 -148.98 -1.60 -2.96 16 3 C 0.05 -0.13 4.32 31.18 0.13 0.00 16 4 H 0.11 -0.69 7.87 -2.39 -0.02 -0.71 16 5 C -0.15 0.67 7.47 31.18 0.23 0.90 16 6 C -0.11 0.66 3.76 -10.27 -0.04 0.62 16 7 H 0.13 -1.41 8.14 -2.39 -0.02 -1.43 16 8 C 0.13 -0.12 5.51 86.38 0.48 0.36 16 9 N -0.71 2.53 5.56 -463.07 -2.57 -0.04 16 10 C 0.51 2.21 7.91 87.66 0.69 2.90 16 11 O -0.58 -9.83 16.50 16.00 0.26 -9.57 16 12 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 13 O -0.32 -2.80 9.67 -73.41 -0.71 -3.51 16 14 C 0.11 0.71 6.69 22.51 0.15 0.86 16 15 C -0.15 -1.36 9.63 22.37 0.22 -1.15 16 16 C -0.05 -0.25 5.38 -19.88 -0.11 -0.36 16 17 C -0.10 -0.25 2.79 71.24 0.20 -0.05 16 18 O -0.56 -3.31 12.81 -148.98 -1.91 -5.22 16 19 Si 0.78 -1.09 29.85 68.60 2.05 0.96 16 20 C -0.16 -0.15 8.67 22.28 0.19 0.05 16 21 C -0.07 0.16 10.04 22.25 0.22 0.38 16 22 C -0.20 0.23 9.04 22.36 0.20 0.43 16 23 C -0.13 0.38 7.47 31.12 0.23 0.61 16 24 H 0.05 -0.22 8.14 -2.39 -0.02 -0.23 16 25 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 -0.02 7.90 -2.39 -0.02 -0.04 16 28 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 29 H 0.05 0.19 7.84 -2.39 -0.02 0.17 16 30 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.42 -5.08 8.47 -92.71 -0.79 -5.86 16 32 H 0.13 -1.06 7.65 -2.39 -0.02 -1.07 16 33 H 0.13 -1.14 7.67 -2.39 -0.02 -1.16 16 34 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.09 -0.04 7.96 -2.39 -0.02 -0.06 16 36 H 0.39 -1.04 8.74 -74.06 -0.65 -1.69 16 37 H -0.29 -0.78 7.11 99.48 0.71 -0.07 16 38 H -0.29 -1.38 7.05 99.48 0.70 -0.68 16 39 H 0.15 -0.44 4.86 -2.91 -0.01 -0.46 16 40 H 0.17 -1.50 8.06 -2.91 -0.02 -1.52 16 41 H 0.16 -1.45 6.30 -2.91 -0.02 -1.47 16 42 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 Total: 0.00 -29.37 360.46 -0.44 -29.81 By element: Atomic # 1 Polarization: -16.14 SS G_CDS: -0.37 Total: -16.52 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.41 Total: 7.03 kcal Atomic # 7 Polarization: 2.53 SS G_CDS: -2.57 Total: -0.04 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -3.95 Total: -21.25 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.05 Total: 0.96 kcal Total: -29.37 -0.44 -29.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.574 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds