Wall clock time and date at job start Tue Mar 9 2021 13:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42889 * 114.00329 * 2 1 4 4 H 1.09004 * 112.84978 * 341.19267 * 3 2 1 5 5 C 1.53787 * 113.69282 * 112.46337 * 3 2 1 6 6 C 1.53777 * 87.08258 * 139.99242 * 5 3 2 7 7 H 1.09007 * 113.69036 * 89.12874 * 6 5 3 8 8 C 1.52996 * 113.61279 * 220.01941 * 6 5 3 9 9 N 1.46501 * 109.47205 * 272.49390 * 8 6 5 10 10 C 1.34777 * 120.00094 * 180.02562 * 9 8 6 11 11 O 1.21278 * 119.99800 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99926 * 180.02562 * 10 9 8 13 13 N 1.46898 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.46906 * 110.99888 * 293.94952 * 13 12 10 15 15 C 1.39678 * 111.00362 * 169.99543 * 13 12 10 16 16 C 1.38886 * 120.07730 * 239.99702 * 15 13 12 17 17 C 1.50699 * 120.03573 * 359.95882 * 16 15 13 18 18 O 1.42895 * 109.47297 * 74.99760 * 17 16 15 19 19 Si 1.86308 * 109.46840 * 194.99708 * 17 16 15 20 20 C 1.38124 * 119.92562 * 179.97438 * 16 15 13 21 21 C 1.38266 * 120.07435 * 0.02563 * 20 16 15 22 22 C 1.50694 * 119.92568 * 179.97438 * 21 20 16 23 23 F 1.39901 * 109.47192 * 90.00157 * 22 21 20 24 24 F 1.39898 * 109.47519 * 210.00255 * 22 21 20 25 25 F 1.39901 * 109.47602 * 330.00267 * 22 21 20 26 26 C 1.38307 * 120.15063 * 359.97438 * 21 20 16 27 27 C 1.38086 * 120.07423 * 359.73381 * 26 21 20 28 28 C 1.53776 * 87.08440 * 334.57029 * 6 5 3 29 29 H 1.09003 * 109.46649 * 60.00047 * 1 2 3 30 30 H 1.08997 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47333 * 300.00297 * 1 2 3 32 32 H 1.09002 * 113.61202 * 25.44338 * 5 3 2 33 33 H 1.08995 * 113.61331 * 254.54467 * 5 3 2 34 34 H 1.09001 * 109.46972 * 152.50058 * 8 6 5 35 35 H 1.08992 * 109.47549 * 32.49811 * 8 6 5 36 36 H 0.96998 * 119.99617 * 0.02562 * 9 8 6 37 37 H 1.08992 * 109.47804 * 59.99842 * 12 10 9 38 38 H 1.09003 * 109.46937 * 299.99587 * 12 10 9 39 39 H 1.09001 * 109.46544 * 60.00058 * 14 13 12 40 40 H 1.09001 * 109.47272 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47033 * 300.00113 * 14 13 12 42 42 H 1.08998 * 109.47083 * 314.98968 * 17 16 15 43 43 H 0.96697 * 114.00063 * 299.99622 * 18 17 16 44 44 H 1.48501 * 109.99965 * 59.99744 * 19 17 16 45 45 H 1.48500 * 109.99726 * 181.31663 * 19 17 16 46 46 H 1.07999 * 119.96428 * 180.02562 * 20 16 15 47 47 H 1.07995 * 119.96508 * 180.02562 * 26 21 20 48 48 H 1.08001 * 120.03852 * 180.27262 * 27 26 21 49 49 H 1.08993 * 113.61980 * 139.97820 * 28 6 5 50 50 H 1.09008 * 113.61682 * 270.80504 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7532 1.6510 1.3014 6 6 3.8221 2.3197 0.4211 7 1 3.6223 3.3707 0.2118 8 6 5.2537 2.0711 0.9000 9 7 5.6248 3.0933 1.8816 10 6 6.8496 3.0747 2.4438 11 8 7.6447 2.2119 2.1367 12 6 7.2311 4.1259 3.4540 13 7 8.6061 3.8879 3.9128 14 6 8.6996 2.6298 4.6654 15 6 9.0730 4.9622 4.6736 16 6 10.1973 5.6679 4.2652 17 6 10.9162 5.2749 3.0004 18 8 10.1572 5.7038 1.8681 19 14 12.5952 6.0816 2.9642 20 6 10.6559 6.7301 5.0197 21 6 9.9974 7.0908 6.1807 22 6 10.5010 8.2498 7.0016 23 9 9.8902 9.4304 6.5655 24 9 10.1928 8.0356 8.3493 25 9 11.8877 8.3595 6.8522 26 6 8.8774 6.3902 6.5904 27 6 8.4100 5.3311 5.8376 28 6 3.3757 1.3718 -0.7045 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1169 0.7770 1.8418 33 1 2.2133 2.3502 1.9398 34 1 5.9347 2.1193 0.0502 35 1 5.3168 1.0852 1.3605 36 1 4.9890 3.7835 2.1269 37 1 6.5505 4.0771 4.3039 38 1 7.1675 5.1120 2.9938 39 1 8.3960 1.8007 4.0263 40 1 9.7281 2.4779 4.9930 41 1 8.0442 2.6771 5.5351 42 1 11.0329 4.1916 2.9704 43 1 9.2699 5.3224 1.8221 44 1 13.3944 5.6437 4.1367 45 1 13.3018 5.7275 1.7070 46 1 11.5299 7.2795 4.7024 47 1 8.3651 6.6747 7.4975 48 1 7.5329 4.7872 6.1558 49 1 3.3382 1.8456 -1.6853 50 1 3.9105 0.4220 -0.7133 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_6406254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:27 Heat of formation + Delta-G solvation = -186.231940 kcal Electronic energy + Delta-G solvation = -36679.290307 eV Core-core repulsion = 31259.939367 eV Total energy + Delta-G solvation = -5419.350940 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.18543 -48.71038 -48.64506 -41.80074 -40.88946 -40.17142 -37.85657 -37.61545 -37.29637 -35.24550 -33.02219 -32.16118 -30.39903 -28.45909 -27.65710 -27.21835 -26.96798 -26.63864 -25.03800 -23.57948 -23.05489 -22.07015 -21.56583 -20.47414 -19.54163 -19.49234 -19.44090 -18.48913 -18.20572 -18.03294 -17.35128 -17.02039 -16.89374 -16.65497 -16.48305 -16.22303 -16.02009 -15.94383 -15.58188 -15.53750 -15.37649 -15.21300 -15.10998 -15.06680 -14.84389 -14.80387 -14.70593 -14.62519 -14.23494 -14.19209 -13.97673 -13.61596 -13.54924 -13.43009 -13.19910 -13.03634 -12.88978 -12.80321 -12.57986 -12.42596 -12.22251 -11.95269 -11.70640 -11.45481 -11.40045 -11.21399 -10.89367 -10.42507 -10.22945 -10.11645 -10.07671 -9.67690 -4.97889 -0.36857 0.01476 1.30008 1.55384 1.60158 1.61167 1.91279 1.92425 2.17767 2.62308 2.72724 2.89086 2.94737 3.37167 3.46278 3.49351 3.57381 3.66264 3.74213 3.82982 3.84386 3.85330 4.02539 4.03374 4.07825 4.13051 4.18577 4.28366 4.31895 4.33985 4.42553 4.46443 4.49067 4.53682 4.62555 4.68689 4.74644 4.81808 4.83682 4.86437 4.87435 4.96458 4.97635 5.02202 5.12417 5.15457 5.30806 5.38225 5.49239 5.54522 6.06643 6.31186 6.55959 6.56580 7.26943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.052 3.948 4 H 0.105 0.895 5 C -0.147 4.147 6 C -0.106 4.106 7 H 0.123 0.877 8 C 0.137 3.863 9 N -0.715 5.715 10 C 0.511 3.489 11 O -0.566 6.566 12 C 0.038 3.962 13 N -0.507 5.507 14 C 0.026 3.974 15 C 0.129 3.871 16 C -0.100 4.100 17 C -0.066 4.066 18 O -0.540 6.540 19 Si 0.787 3.213 20 C -0.062 4.062 21 C -0.185 4.185 22 C 0.509 3.491 23 F -0.177 7.177 24 F -0.179 7.179 25 F -0.180 7.180 26 C -0.053 4.053 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.417 0.583 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.371 0.629 44 H -0.265 1.265 45 H -0.294 1.294 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.085 0.915 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 2.902 1.382 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.006 4.006 4 H 0.123 0.877 5 C -0.184 4.184 6 C -0.124 4.124 7 H 0.141 0.859 8 C 0.013 3.987 9 N -0.369 5.369 10 C 0.298 3.702 11 O -0.444 6.444 12 C -0.091 4.091 13 N -0.229 5.229 14 C -0.120 4.120 15 C 0.035 3.965 16 C -0.101 4.101 17 C -0.175 4.175 18 O -0.346 6.346 19 Si 0.689 3.311 20 C -0.080 4.080 21 C -0.186 4.186 22 C 0.455 3.545 23 F -0.159 7.159 24 F -0.160 7.160 25 F -0.161 7.161 26 C -0.071 4.071 27 C -0.158 4.158 28 C -0.172 4.172 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.219 0.781 44 H -0.190 1.190 45 H -0.221 1.221 46 H 0.168 0.832 47 H 0.175 0.825 48 H 0.177 0.823 49 H 0.103 0.897 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.308 2.274 0.596 6.731 hybrid contribution -1.634 -1.044 0.882 2.131 sum -7.942 1.230 1.478 8.171 Atomic orbital electron populations 1.22927 0.79959 1.03475 1.00808 1.87923 1.21143 1.28770 1.94754 1.23914 0.94209 0.85150 0.97295 0.87744 1.23555 0.97210 1.00708 0.96962 1.22487 0.92215 1.00933 0.96783 0.85857 1.21193 0.95164 0.91038 0.91283 1.45827 1.15165 1.32222 1.43640 1.20781 0.81539 0.85868 0.82050 1.90724 1.51183 1.39417 1.63095 1.22200 0.88929 0.99417 0.98523 1.59155 1.22241 1.01550 1.39941 1.22559 1.02270 0.90492 0.96694 1.18860 0.94046 0.91715 0.91865 1.20167 0.96742 0.95691 0.97489 1.25295 1.05397 1.02740 0.84038 1.86688 1.31343 1.72471 1.44149 0.92655 0.70627 0.90369 0.77407 1.20813 0.99015 0.95468 0.92669 1.19978 1.01336 0.98804 0.98475 1.18330 0.75284 0.82796 0.78079 1.93243 1.82947 1.50304 1.89378 1.93199 1.92761 1.94791 1.35237 1.93205 1.30964 1.96473 1.95456 1.21106 0.93009 0.93331 0.99668 1.21869 1.01598 0.97796 0.94513 1.23238 0.95315 0.99938 0.98678 0.93050 0.89414 0.93114 0.90629 0.89475 0.92359 0.92940 0.74549 0.88104 0.85258 0.90348 0.91773 0.93142 0.90967 0.78055 1.19025 1.22125 0.83160 0.82523 0.82260 0.89663 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.41 -1.16 10.72 -148.98 -1.60 -2.76 16 3 C 0.05 -0.15 4.31 31.12 0.13 -0.02 16 4 H 0.10 -0.67 7.87 -2.39 -0.02 -0.69 16 5 C -0.15 0.77 7.47 31.12 0.23 1.00 16 6 C -0.11 0.75 3.75 -10.27 -0.04 0.71 16 7 H 0.12 -1.39 8.14 -2.38 -0.02 -1.41 16 8 C 0.14 -0.42 5.51 86.38 0.48 0.06 16 9 N -0.71 4.57 5.56 -463.08 -2.57 1.99 16 10 C 0.51 -0.73 7.55 87.66 0.66 -0.07 16 11 O -0.57 -4.93 14.31 -3.02 -0.04 -4.97 16 12 C 0.04 -0.28 4.90 85.56 0.42 0.14 16 13 N -0.51 1.04 3.19 -724.43 -2.31 -1.27 16 14 C 0.03 -0.02 8.94 127.69 1.14 1.12 16 15 C 0.13 -0.32 4.61 38.21 0.18 -0.14 16 16 C -0.10 -0.03 5.28 -19.74 -0.10 -0.13 16 17 C -0.07 -0.20 2.30 71.24 0.16 -0.03 16 18 O -0.54 -2.23 12.65 -148.98 -1.89 -4.11 16 19 Si 0.79 1.99 30.17 68.60 2.07 4.06 16 20 C -0.06 0.02 8.01 22.25 0.18 0.20 16 21 C -0.18 0.19 5.46 -19.84 -0.11 0.08 16 22 C 0.51 0.53 3.36 71.23 0.24 0.77 16 23 F -0.18 -0.41 17.30 44.97 0.78 0.37 16 24 F -0.18 -0.32 16.46 44.97 0.74 0.42 16 25 F -0.18 -0.49 16.46 44.97 0.74 0.25 16 26 C -0.05 0.24 9.39 22.25 0.21 0.45 16 27 C -0.14 0.84 8.71 22.40 0.20 1.03 16 28 C -0.13 0.46 7.47 31.12 0.23 0.69 16 29 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.08 -0.10 7.90 -2.39 -0.02 -0.12 16 33 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.06 0.01 8.14 -2.39 -0.02 0.00 16 35 H 0.05 0.06 7.84 -2.39 -0.02 0.04 16 36 H 0.42 -5.46 8.47 -92.71 -0.79 -6.24 16 37 H 0.10 -1.25 7.46 -2.39 -0.02 -1.27 16 38 H 0.13 -1.41 8.06 -2.39 -0.02 -1.43 16 39 H 0.08 0.31 5.88 -2.39 -0.01 0.30 16 40 H 0.06 0.06 8.12 -2.39 -0.02 0.04 16 41 H 0.05 -0.24 7.49 -2.39 -0.02 -0.26 16 42 H 0.07 0.40 7.78 -2.39 -0.02 0.38 16 43 H 0.37 0.33 8.38 -74.06 -0.62 -0.30 16 44 H -0.26 -1.34 7.11 99.48 0.71 -0.63 16 45 H -0.29 -2.82 7.11 99.48 0.71 -2.12 16 46 H 0.15 -0.37 4.67 -2.91 -0.01 -0.39 16 47 H 0.16 -1.25 7.60 -2.91 -0.02 -1.27 16 48 H 0.16 -1.76 7.17 -2.91 -0.02 -1.78 16 49 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 50 H 0.08 0.01 8.10 -2.38 -0.02 -0.01 16 Total: 0.00 -19.12 418.67 0.99 -18.13 By element: Atomic # 1 Polarization: -18.79 SS G_CDS: -0.37 Total: -19.15 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.44 Total: 7.04 kcal Atomic # 7 Polarization: 5.61 SS G_CDS: -4.88 Total: 0.73 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -3.52 Total: -11.84 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 2.26 Total: 1.04 kcal Atomic # 14 Polarization: 1.99 SS G_CDS: 2.07 Total: 4.06 kcal Total: -19.12 0.99 -18.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_6406254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.103 kcal (2) G-P(sol) polarization free energy of solvation -19.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds