Wall clock time and date at job start Tue Mar 9 2021 13:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00113 * 2 1 4 4 H 1.09002 * 112.85047 * 18.80511 * 3 2 1 5 5 C 1.53781 * 113.61697 * 149.99774 * 3 2 1 6 6 C 1.53781 * 87.08107 * 140.06761 * 5 3 2 7 7 H 1.08995 * 113.61369 * 89.20374 * 6 5 3 8 8 C 1.53006 * 113.61256 * 220.02188 * 6 5 3 9 9 N 1.46500 * 109.46998 * 185.00048 * 8 6 5 10 10 C 1.34769 * 120.00237 * 180.02562 * 9 8 6 11 11 O 1.21701 * 119.99994 * 359.97438 * 10 9 8 12 12 C 1.46681 * 120.00138 * 179.97438 * 10 9 8 13 13 C 1.37879 * 126.23167 * 179.68885 * 12 10 9 14 14 C 1.39838 * 107.08334 * 179.84919 * 13 12 10 15 15 C 1.35457 * 107.86407 * 0.41624 * 14 13 12 16 16 C 1.50696 * 125.56325 * 179.76050 * 15 14 13 17 17 O 1.42892 * 109.47233 * 244.97386 * 16 15 14 18 18 Si 1.86296 * 109.47043 * 4.97717 * 16 15 14 19 19 N 1.35536 * 108.86959 * 359.74350 * 15 14 13 20 20 C 1.53783 * 87.08349 * 334.56836 * 6 5 3 21 21 H 1.08997 * 109.47229 * 299.99394 * 1 2 3 22 22 H 1.09002 * 109.47459 * 59.99902 * 1 2 3 23 23 H 1.09004 * 109.47478 * 179.97438 * 1 2 3 24 24 H 1.09007 * 113.61246 * 25.51815 * 5 3 2 25 25 H 1.09000 * 113.61825 * 254.62089 * 5 3 2 26 26 H 1.08993 * 109.46955 * 305.00273 * 8 6 5 27 27 H 1.09000 * 109.47050 * 65.00102 * 8 6 5 28 28 H 0.97010 * 119.99909 * 359.97438 * 9 8 6 29 29 H 1.08001 * 126.45523 * 359.97438 * 13 12 10 30 30 H 1.07994 * 126.06803 * 180.15413 * 14 13 12 31 31 H 1.09000 * 109.47166 * 124.97338 * 16 15 14 32 32 H 0.96702 * 113.99859 * 60.00273 * 17 16 15 33 33 H 1.48505 * 110.00104 * 58.68322 * 18 16 15 34 34 H 1.48507 * 110.00190 * 179.97438 * 18 16 15 35 35 H 0.97001 * 125.67220 * 180.02562 * 19 15 14 36 36 H 1.08996 * 113.61199 * 139.97325 * 20 6 5 37 37 H 1.08996 * 113.61879 * 270.88830 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 0.3238 5 6 3.3755 1.3719 0.7046 6 6 3.8220 2.3199 -0.4210 7 1 3.6221 3.3707 -0.2116 8 6 5.2537 2.0713 -0.8998 9 7 5.6247 3.0935 -1.8815 10 6 6.8491 3.0744 -2.4444 11 8 7.6467 2.2082 -2.1368 12 6 7.2203 4.0975 -3.4277 13 6 8.4329 4.2033 -4.0754 14 6 8.3510 5.3135 -4.9217 15 6 7.1206 5.8600 -4.7724 16 6 6.6097 7.0797 -5.4951 17 8 6.3741 8.1278 -4.5528 18 14 7.8760 7.6385 -6.7420 19 7 6.4238 5.1304 -3.8673 20 6 2.7531 1.6511 -1.3014 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.9095 0.4216 0.7125 25 1 3.3381 1.8457 1.6855 26 1 5.9345 2.1195 -0.0500 27 1 5.3168 1.0854 -1.3604 28 1 4.9888 3.7838 -2.1269 29 1 9.2846 3.5505 -3.9538 30 1 9.1318 5.6740 -5.5749 31 1 5.6790 6.8354 -6.0071 32 1 7.1609 8.3972 -4.0594 33 1 8.1533 6.5461 -7.7089 34 1 7.3839 8.8406 -7.4620 35 1 5.5149 5.3066 -3.5779 36 1 2.2132 2.3504 -1.9397 37 1 3.1168 0.7771 -1.8418 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_6580494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:30 Heat of formation + Delta-G solvation = -43.871481 kcal Electronic energy + Delta-G solvation = -19831.354631 eV Core-core repulsion = 16576.915447 eV Total energy + Delta-G solvation = -3254.439184 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.52924 -40.87960 -40.00875 -37.68186 -37.49103 -35.46343 -32.26340 -31.52427 -29.38602 -27.57096 -26.79218 -26.42844 -23.76466 -22.85805 -21.53972 -21.31904 -20.68277 -19.74376 -18.19020 -17.72311 -17.07052 -16.83402 -16.68035 -16.34486 -16.08795 -15.98842 -15.41151 -15.14341 -15.03056 -14.65981 -14.37501 -14.10944 -13.93893 -13.71337 -13.59585 -13.47682 -12.92398 -12.50469 -12.20829 -12.09993 -12.01668 -11.78054 -11.48877 -11.31184 -10.65468 -10.46597 -10.33482 -10.07897 -9.28556 -4.90153 0.28233 1.23851 1.53792 1.73393 1.89957 1.98800 2.21463 2.25576 2.84546 3.41584 3.48012 3.52708 3.60564 3.76171 3.76640 3.83984 4.06112 4.24238 4.25365 4.31196 4.43064 4.45388 4.51129 4.61074 4.68224 4.76975 4.79168 4.82872 4.94733 4.96539 5.07886 5.11709 5.17041 5.35276 5.57989 5.78675 6.25740 6.27951 6.43442 6.68840 7.00065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.054 3.946 4 H 0.106 0.894 5 C -0.130 4.130 6 C -0.108 4.108 7 H 0.122 0.878 8 C 0.134 3.866 9 N -0.714 5.714 10 C 0.586 3.414 11 O -0.573 6.573 12 C -0.065 4.065 13 C -0.118 4.118 14 C -0.204 4.204 15 C 0.029 3.971 16 C -0.054 4.054 17 O -0.554 6.554 18 Si 0.804 3.196 19 N -0.512 5.512 20 C -0.151 4.151 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.410 0.590 29 H 0.146 0.854 30 H 0.171 0.829 31 H 0.116 0.884 32 H 0.399 0.601 33 H -0.287 1.287 34 H -0.295 1.295 35 H 0.427 0.573 36 H 0.084 0.916 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 5.566 0.586 6.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.003 4.003 4 H 0.124 0.876 5 C -0.168 4.168 6 C -0.127 4.127 7 H 0.140 0.860 8 C 0.010 3.990 9 N -0.366 5.366 10 C 0.374 3.626 11 O -0.453 6.453 12 C -0.179 4.179 13 C -0.145 4.145 14 C -0.228 4.228 15 C -0.090 4.090 16 C -0.164 4.164 17 O -0.362 6.362 18 Si 0.709 3.291 19 N -0.110 5.110 20 C -0.188 4.188 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.246 0.754 29 H 0.163 0.837 30 H 0.188 0.812 31 H 0.134 0.866 32 H 0.250 0.750 33 H -0.214 1.214 34 H -0.223 1.223 35 H 0.267 0.733 36 H 0.103 0.897 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.177 4.854 -0.135 5.803 hybrid contribution -1.390 -0.206 0.185 1.417 sum -4.566 4.648 0.049 6.516 Atomic orbital electron populations 1.22934 0.79935 1.03531 1.00795 1.87927 1.21160 1.28631 1.94721 1.23882 0.94278 0.85247 0.96939 0.87632 1.23222 0.95130 0.99886 0.98526 1.22507 0.91881 1.01064 0.97211 0.85960 1.21346 0.95664 0.90802 0.91142 1.45746 1.14566 1.32351 1.43902 1.17286 0.81993 0.83391 0.79916 1.90851 1.51843 1.38744 1.63830 1.20286 0.94875 0.95894 1.06812 1.21511 0.96281 0.99300 0.97402 1.20961 0.97464 0.99060 1.05301 1.21373 0.93528 0.97450 0.96681 1.25033 1.09264 0.84066 0.98013 1.86474 1.40693 1.52729 1.56312 0.92963 0.83108 0.77037 0.76028 1.41892 1.14903 1.21268 1.32912 1.23591 0.97313 1.00743 0.97184 0.92917 0.93261 0.89330 0.89982 0.89278 0.91508 0.92411 0.75403 0.83661 0.81183 0.86646 0.75010 1.21402 1.22299 0.73308 0.89745 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.41 -1.51 10.72 -148.98 -1.60 -3.11 16 3 C 0.05 -0.10 4.31 31.12 0.13 0.04 16 4 H 0.11 -0.58 7.87 -2.39 -0.02 -0.60 16 5 C -0.13 0.33 7.47 31.12 0.23 0.56 16 6 C -0.11 0.54 3.76 -10.26 -0.04 0.51 16 7 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 8 C 0.13 0.01 5.51 86.38 0.48 0.48 16 9 N -0.71 0.49 5.55 -467.08 -2.59 -2.10 16 10 C 0.59 3.96 7.79 86.45 0.67 4.64 16 11 O -0.57 -9.07 16.88 -4.35 -0.07 -9.14 16 12 C -0.06 -0.23 7.06 40.35 0.28 0.05 16 13 C -0.12 -0.50 10.65 22.57 0.24 -0.26 16 14 C -0.20 0.16 9.32 22.01 0.21 0.37 16 15 C 0.03 -0.07 6.47 41.34 0.27 0.20 16 16 C -0.05 0.27 3.08 71.23 0.22 0.49 16 17 O -0.55 2.69 12.88 -148.98 -1.92 0.77 16 18 Si 0.80 -4.37 30.56 68.60 2.10 -2.28 16 19 N -0.51 1.30 5.99 -171.93 -1.03 0.27 16 20 C -0.15 0.47 7.47 31.12 0.23 0.70 16 21 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 22 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 23 H 0.09 -0.22 8.14 -2.38 -0.02 -0.24 16 24 H 0.08 0.05 8.10 -2.38 -0.02 0.03 16 25 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.06 0.22 7.84 -2.39 -0.02 0.21 16 28 H 0.41 -2.98 7.60 -92.70 -0.70 -3.68 16 29 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 30 H 0.17 -0.96 6.19 -2.91 -0.02 -0.97 16 31 H 0.12 -0.58 7.96 -2.39 -0.02 -0.60 16 32 H 0.40 -4.78 8.70 -74.06 -0.64 -5.42 16 33 H -0.29 -0.14 7.11 99.48 0.71 0.57 16 34 H -0.30 -0.50 7.11 99.48 0.71 0.21 16 35 H 0.43 -3.35 8.19 -92.71 -0.76 -4.11 16 36 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.08 0.07 7.90 -2.39 -0.02 0.05 16 Total: 0.00 -20.97 315.92 -1.93 -22.89 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -0.97 Total: -16.27 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 4.16 Total: 8.97 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -3.62 Total: -1.84 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -3.59 Total: -11.48 kcal Atomic # 14 Polarization: -4.37 SS G_CDS: 2.10 Total: -2.28 kcal Total: -20.97 -1.93 -22.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_6580494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.977 kcal (2) G-P(sol) polarization free energy of solvation -20.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds