Wall clock time and date at job start Tue Mar 9 2021 13:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99381 * 2 1 4 4 H 1.09001 * 112.85124 * 341.19201 * 3 2 1 5 5 C 1.53954 * 113.66619 * 112.44334 * 3 2 1 6 6 C 1.53787 * 87.02172 * 139.93109 * 5 3 2 7 7 H 1.08996 * 113.61654 * 89.22647 * 6 5 3 8 8 C 1.52994 * 113.61402 * 220.04909 * 6 5 3 9 9 N 1.46500 * 109.47049 * 274.13659 * 8 6 5 10 10 C 1.34774 * 120.00137 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00327 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00014 * 179.97438 * 10 9 8 13 13 N 1.46504 * 109.46914 * 179.97438 * 12 10 9 14 14 C 1.36837 * 125.06020 * 264.97248 * 13 12 10 15 15 C 1.34239 * 109.93348 * 180.02562 * 14 13 12 16 16 C 1.50694 * 126.49493 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.47118 * 255.02113 * 16 15 14 18 18 Si 1.86298 * 109.47775 * 15.02358 * 16 15 14 19 19 C 1.46486 * 107.00017 * 0.24256 * 15 14 13 20 20 C 1.39600 * 134.03574 * 179.76215 * 19 15 14 21 21 C 1.36656 * 119.76522 * 179.97438 * 20 19 15 22 22 C 1.38789 * 120.52838 * 0.02562 * 21 20 19 23 23 C 1.37792 * 120.66716 * 359.63736 * 22 21 20 24 24 C 1.37687 * 125.06404 * 85.01943 * 13 12 10 25 25 C 1.53782 * 87.16997 * 334.63590 * 6 5 3 26 26 H 1.09000 * 109.47217 * 60.00355 * 1 2 3 27 27 H 1.09011 * 109.46547 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47355 * 299.99718 * 1 2 3 29 29 H 1.08996 * 113.61382 * 25.41045 * 5 3 2 30 30 H 1.09004 * 113.66515 * 254.45578 * 5 3 2 31 31 H 1.09001 * 109.47343 * 154.13494 * 8 6 5 32 32 H 1.08999 * 109.47442 * 34.13032 * 8 6 5 33 33 H 0.97004 * 120.00207 * 359.97438 * 9 8 6 34 34 H 1.08994 * 109.46850 * 60.00131 * 12 10 9 35 35 H 1.09002 * 109.47294 * 299.99693 * 12 10 9 36 36 H 1.07997 * 125.03329 * 0.02562 * 14 13 12 37 37 H 1.09004 * 109.47407 * 135.02470 * 16 15 14 38 38 H 0.96708 * 114.00246 * 180.02562 * 17 16 15 39 39 H 1.48506 * 109.99834 * 300.00486 * 18 16 15 40 40 H 1.48502 * 110.00011 * 61.31751 * 18 16 15 41 41 H 1.08003 * 120.11534 * 0.02562 * 20 19 15 42 42 H 1.07998 * 119.73948 * 180.02562 * 21 20 19 43 43 H 1.08002 * 119.67039 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.11377 * 179.88969 * 23 22 21 45 45 H 1.09002 * 113.61228 * 139.94067 * 25 6 5 46 46 H 1.09003 * 113.61779 * 270.75942 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 -0.3238 5 6 2.7532 1.6512 1.3033 6 6 3.8226 2.3184 0.4222 7 1 3.6233 3.3696 0.2142 8 6 5.2541 2.0683 0.9006 9 7 5.6130 3.0671 1.9104 10 6 6.8355 3.0432 2.4772 11 8 7.6385 2.1946 2.1517 12 6 7.2049 4.0711 3.5156 13 7 8.5757 3.8315 3.9738 14 6 8.9184 3.1075 5.0832 15 6 10.2537 3.0823 5.2187 16 6 11.0310 2.3923 6.3099 17 8 11.5218 3.3658 7.2337 18 14 9.9182 1.1943 7.2029 19 6 10.8116 3.8582 4.1085 20 6 12.1080 4.1934 3.7139 21 6 12.3013 4.9544 2.5954 22 6 11.2188 5.3975 1.8485 23 6 9.9311 5.0726 2.2160 24 6 9.7109 4.3022 3.3529 25 6 3.3755 1.3721 -0.7045 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.1161 0.7772 1.8439 30 1 2.2144 2.3515 1.9416 31 1 5.9382 2.1441 0.0553 32 1 5.3230 1.0712 1.3354 33 1 4.9710 3.7462 2.1706 34 1 6.5212 3.9953 4.3610 35 1 7.1359 5.0682 3.0806 36 1 8.2184 2.6273 5.7508 37 1 11.8700 1.8515 5.8721 38 1 12.0333 2.9920 7.9644 39 1 8.7702 1.9193 7.8044 40 1 9.4266 0.1581 6.2597 41 1 12.9552 3.8518 4.2901 42 1 13.3045 5.2132 2.2903 43 1 11.3875 5.9979 0.9667 44 1 9.0952 5.4237 1.6291 45 1 3.3383 1.8472 -1.6848 46 1 3.9098 0.4220 -0.7147 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:47 Heat of formation + Delta-G solvation = -13.333729 kcal Electronic energy + Delta-G solvation = -27743.574790 eV Core-core repulsion = 23794.706163 eV Total energy + Delta-G solvation = -3948.868627 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.65042 -41.06482 -40.24448 -38.13724 -37.68096 -37.45565 -35.44538 -34.27516 -31.67263 -30.39249 -29.98857 -28.43957 -27.38444 -26.73053 -25.65841 -23.91888 -23.39364 -22.69218 -21.83853 -20.69757 -20.56524 -18.75914 -18.35342 -18.25339 -17.84459 -17.63932 -16.86512 -16.76120 -16.56900 -16.52238 -16.05486 -15.84655 -15.54246 -15.33192 -15.03540 -14.90023 -14.81327 -14.51557 -14.35460 -14.19266 -13.68258 -13.62630 -13.50032 -13.36837 -12.93625 -12.77293 -12.65957 -12.51288 -12.48237 -12.08473 -12.03240 -11.82628 -11.79170 -11.49302 -11.24944 -10.65114 -10.47574 -10.30082 -10.19373 -9.26915 -8.74745 -4.99517 0.03711 0.56365 1.29113 1.31058 1.32073 1.49090 1.67704 1.96360 2.08046 2.83211 2.88225 3.35999 3.45326 3.46544 3.52411 3.63734 3.67340 3.76059 3.77683 3.79003 3.95937 4.00263 4.05677 4.17651 4.21430 4.22261 4.34590 4.41356 4.50383 4.51079 4.57523 4.60403 4.65430 4.70246 4.74739 4.77046 4.81751 4.82762 4.94791 5.06284 5.07094 5.16454 5.34441 5.43543 5.57690 5.64607 5.65277 6.03052 6.14522 6.26826 6.35022 6.98878 7.01060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.054 3.946 4 H 0.108 0.892 5 C -0.149 4.149 6 C -0.105 4.105 7 H 0.127 0.873 8 C 0.135 3.865 9 N -0.706 5.706 10 C 0.489 3.511 11 O -0.575 6.575 12 C 0.087 3.913 13 N -0.468 5.468 14 C 0.051 3.949 15 C -0.180 4.180 16 C -0.046 4.046 17 O -0.565 6.565 18 Si 0.786 3.214 19 C -0.120 4.120 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.102 4.102 23 C -0.137 4.137 24 C 0.089 3.911 25 C -0.133 4.133 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.422 0.578 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.174 0.826 37 H 0.074 0.926 38 H 0.399 0.601 39 H -0.280 1.280 40 H -0.303 1.303 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.134 0.866 45 H 0.088 0.912 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 3.465 1.349 6.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.004 4.004 4 H 0.125 0.875 5 C -0.186 4.186 6 C -0.124 4.124 7 H 0.145 0.855 8 C 0.011 3.989 9 N -0.360 5.360 10 C 0.274 3.726 11 O -0.454 6.454 12 C -0.037 4.037 13 N -0.151 5.151 14 C -0.074 4.074 15 C -0.187 4.187 16 C -0.155 4.155 17 O -0.374 6.374 18 Si 0.691 3.309 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.170 4.170 22 C -0.121 4.121 23 C -0.157 4.157 24 C -0.016 4.016 25 C -0.171 4.171 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.260 0.740 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.191 0.809 37 H 0.092 0.908 38 H 0.250 0.750 39 H -0.207 1.207 40 H -0.231 1.231 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.152 0.848 45 H 0.106 0.894 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.171 2.798 0.679 6.809 hybrid contribution -0.402 0.310 -0.557 0.753 sum -6.572 3.108 0.122 7.271 Atomic orbital electron populations 1.22938 0.79878 1.03513 1.00861 1.87930 1.21227 1.28719 1.94733 1.23931 0.94181 0.85246 0.97015 0.87469 1.23597 0.97225 1.00712 0.97097 1.22499 0.91704 1.01204 0.96967 0.85520 1.21255 0.95737 0.91303 0.90581 1.45779 1.14656 1.33915 1.41671 1.21428 0.82232 0.85990 0.82950 1.90799 1.51149 1.39743 1.63721 1.21988 0.81859 1.00246 0.99617 1.43395 1.04972 1.44569 1.22120 1.21722 0.95904 0.98354 0.91423 1.20055 0.92568 1.06927 0.99173 1.24218 1.03285 0.96370 0.91676 1.86482 1.74825 1.35795 1.40294 0.94285 0.78916 0.75409 0.82327 1.19356 0.93786 1.02390 0.96868 1.20505 0.94818 0.97772 0.96944 1.20987 1.00263 0.99955 0.95760 1.21205 0.91189 0.99446 1.00225 1.20280 0.98754 1.01238 0.95423 1.18501 0.85740 1.00623 0.96721 1.23232 0.95361 0.99835 0.98689 0.92921 0.89405 0.93112 0.90857 0.89241 0.92287 0.93193 0.74028 0.82750 0.83221 0.80872 0.90756 0.75032 1.20673 1.23059 0.85366 0.83763 0.83133 0.84779 0.89385 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.41 -1.45 10.72 -148.98 -1.60 -3.04 16 3 C 0.05 -0.12 4.31 31.18 0.13 0.01 16 4 H 0.11 -0.66 7.87 -2.39 -0.02 -0.68 16 5 C -0.15 0.62 7.48 31.18 0.23 0.85 16 6 C -0.11 0.63 3.75 -10.27 -0.04 0.59 16 7 H 0.13 -1.36 8.14 -2.39 -0.02 -1.38 16 8 C 0.14 -0.11 5.50 86.38 0.47 0.36 16 9 N -0.71 2.75 5.56 -463.06 -2.57 0.18 16 10 C 0.49 1.58 7.90 87.66 0.69 2.28 16 11 O -0.58 -8.96 16.42 -3.03 -0.05 -9.01 16 12 C 0.09 -0.19 6.48 85.63 0.56 0.36 16 13 N -0.47 -3.62 2.27 -519.98 -1.18 -4.80 16 14 C 0.05 0.49 9.89 83.00 0.82 1.31 16 15 C -0.18 -2.11 5.61 -18.63 -0.10 -2.22 16 16 C -0.05 -0.24 3.05 71.23 0.22 -0.03 16 17 O -0.56 -2.46 12.86 -148.98 -1.92 -4.38 16 18 Si 0.79 0.87 30.79 68.60 2.11 2.99 16 19 C -0.12 -1.63 6.35 -20.20 -0.13 -1.76 16 20 C -0.08 -0.87 10.05 22.23 0.22 -0.64 16 21 C -0.15 -1.05 9.97 22.03 0.22 -0.83 16 22 C -0.10 -0.59 10.01 22.30 0.22 -0.37 16 23 C -0.14 -1.03 10.00 22.37 0.22 -0.81 16 24 C 0.09 1.02 6.80 39.03 0.27 1.28 16 25 C -0.13 0.34 7.48 31.12 0.23 0.57 16 26 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.07 0.02 7.92 -2.39 -0.02 0.00 16 30 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.05 0.20 7.87 -2.39 -0.02 0.19 16 33 H 0.42 -5.01 8.47 -92.71 -0.79 -5.79 16 34 H 0.15 -1.43 8.12 -2.39 -0.02 -1.45 16 35 H 0.15 -1.27 8.14 -2.39 -0.02 -1.29 16 36 H 0.17 0.94 6.30 -2.91 -0.02 0.92 16 37 H 0.07 0.26 7.96 -2.38 -0.02 0.24 16 38 H 0.40 -2.76 8.74 -74.05 -0.65 -3.41 16 39 H -0.28 -1.44 7.04 99.48 0.70 -0.74 16 40 H -0.30 -2.66 7.11 99.48 0.71 -1.95 16 41 H 0.13 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 44 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 45 H 0.09 -0.41 8.14 -2.39 -0.02 -0.42 16 46 H 0.08 0.10 8.10 -2.39 -0.02 0.08 16 Total: 0.00 -31.29 386.96 -0.13 -31.42 By element: Atomic # 1 Polarization: -15.11 SS G_CDS: -0.41 Total: -15.52 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.47 Total: 2.16 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -3.75 Total: -4.62 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -3.56 Total: -16.43 kcal Atomic # 14 Polarization: 0.87 SS G_CDS: 2.11 Total: 2.99 kcal Total: -31.29 -0.13 -31.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.090 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds