Wall clock time and date at job start Tue Mar 9 2021 13:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.46955 * 2 1 4 4 C 1.50705 * 109.46890 * 119.99993 * 2 1 3 5 5 C 1.38241 * 119.96892 * 245.02152 * 4 2 1 6 6 C 1.38290 * 120.10922 * 179.97438 * 5 4 2 7 7 C 1.38129 * 120.05662 * 359.68358 * 6 5 4 8 8 C 1.38756 * 119.94061 * 0.59068 * 7 6 5 9 9 O 1.35894 * 120.05705 * 179.70151 * 8 7 6 10 10 C 1.42904 * 117.00100 * 359.73008 * 9 8 7 11 11 C 1.52999 * 109.47519 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 11 16 16 H 1.09002 * 112.85201 * 24.08188 * 15 14 12 17 17 C 1.53784 * 113.61491 * 155.28109 * 15 14 12 18 18 C 1.53783 * 87.08338 * 139.98310 * 17 15 14 19 19 H 1.08994 * 113.61765 * 89.19652 * 18 17 15 20 20 C 1.53002 * 113.60920 * 220.02037 * 18 17 15 21 21 O 1.42902 * 109.46644 * 184.99649 * 20 18 17 22 22 C 1.53780 * 87.07825 * 334.56565 * 18 17 15 23 23 C 1.38168 * 119.97091 * 65.00027 * 4 2 1 24 24 H 0.96700 * 114.00436 * 299.99805 * 1 2 3 25 25 H 1.08996 * 109.46989 * 239.99802 * 2 1 3 26 26 H 1.48502 * 109.99931 * 178.67818 * 3 2 1 27 27 H 1.48492 * 110.00184 * 299.99507 * 3 2 1 28 28 H 1.07994 * 119.94645 * 359.97438 * 5 4 2 29 29 H 1.07997 * 119.97188 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.02958 * 180.31912 * 7 6 5 31 31 H 1.09000 * 109.47055 * 59.99243 * 10 9 8 32 32 H 1.09007 * 109.46875 * 300.00253 * 10 9 8 33 33 H 1.09003 * 109.46690 * 59.99935 * 11 10 9 34 34 H 1.08993 * 109.46773 * 300.00271 * 11 10 9 35 35 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 36 36 H 1.09000 * 113.61044 * 254.52540 * 17 15 14 37 37 H 1.09001 * 113.61354 * 25.42535 * 17 15 14 38 38 H 1.08994 * 109.47329 * 304.99447 * 20 18 17 39 39 H 1.08993 * 109.47199 * 64.99972 * 20 18 17 40 40 H 0.96706 * 113.99597 * 179.97438 * 21 20 18 41 41 H 1.08998 * 113.61772 * 270.88604 * 22 18 17 42 42 H 1.09001 * 113.61751 * 139.98662 * 22 18 17 43 43 H 1.07999 * 120.02788 * 0.04444 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6382 -0.0116 2.1912 6 6 3.1000 -0.6605 3.3217 7 6 2.8502 -2.0076 3.4968 8 6 2.1458 -2.7126 2.5313 9 8 1.9039 -4.0393 2.6982 10 6 2.4092 -4.6461 3.8893 11 6 2.0410 -6.1311 3.9010 12 6 2.5745 -6.7709 5.1568 13 8 3.1883 -6.1048 5.9633 14 7 2.3685 -8.0833 5.3842 15 6 2.8923 -8.7067 6.6020 16 1 3.0456 -7.9924 7.4110 17 6 2.1206 -9.9661 7.0303 18 6 3.4829 -10.5841 7.3868 19 1 3.7982 -10.3848 8.4109 20 6 3.6051 -12.0604 7.0040 21 8 4.8524 -12.5733 7.4765 22 6 4.0992 -9.6267 6.3532 23 6 1.6844 -2.0596 1.3977 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5138 -0.8899 26 1 3.5345 1.7703 0.0322 27 1 1.5615 2.4678 -1.2085 28 1 2.8302 1.0429 2.0586 29 1 3.6524 -0.1124 4.0706 30 1 3.2066 -2.5128 4.3823 31 1 1.9723 -4.1568 4.7598 32 1 3.4937 -4.5400 3.9191 33 1 2.4777 -6.6205 3.0305 34 1 0.9566 -6.2366 3.8714 35 1 1.8772 -8.6161 4.7394 36 1 1.4733 -9.8091 7.8932 37 1 1.6148 -10.4695 6.2064 38 1 2.7870 -12.6217 7.4554 39 1 3.5589 -12.1596 5.9196 40 1 4.9977 -13.5066 7.2692 41 1 4.1344 -10.0373 5.3441 42 1 5.0492 -9.1957 6.6691 43 1 1.1324 -2.6051 0.6467 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_4549614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:06 Heat of formation + Delta-G solvation = -110.013632 kcal Electronic energy + Delta-G solvation = -24111.106198 eV Core-core repulsion = 20316.778835 eV Total energy + Delta-G solvation = -3794.327364 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50878 -41.13146 -39.79041 -39.07297 -37.30657 -37.22731 -34.65005 -33.21987 -32.47780 -30.87175 -28.83526 -27.04398 -26.73476 -25.60446 -23.70092 -23.19235 -22.00569 -21.55222 -20.58641 -19.35476 -18.29140 -18.09790 -17.79716 -17.51122 -17.31525 -17.12310 -16.87962 -16.37428 -16.24504 -16.01457 -15.46185 -15.32906 -15.09004 -14.85748 -14.46657 -14.33333 -14.21646 -14.09291 -13.48121 -13.38469 -13.25948 -12.92020 -12.84392 -12.71617 -12.41453 -12.28727 -12.05170 -11.83467 -11.74166 -11.64418 -11.48988 -11.06076 -10.81092 -10.48855 -10.10715 -9.96237 -9.29171 -4.98306 0.17988 0.37229 1.29690 1.47158 1.65521 1.69728 1.97345 2.47883 2.64782 3.22761 3.43792 3.49843 3.54650 3.64801 3.66632 3.77031 3.83039 3.87378 3.94697 4.02647 4.08044 4.21974 4.25656 4.35952 4.41640 4.45267 4.49007 4.60361 4.62466 4.65117 4.68919 4.73737 4.77398 4.79561 4.95927 4.99659 5.04695 5.23782 5.25801 5.36281 5.42118 5.53118 5.68746 6.30451 6.44731 6.75768 6.88234 7.13302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.785 3.215 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.212 4.212 8 C 0.116 3.884 9 O -0.324 6.324 10 C 0.074 3.926 11 C -0.133 4.133 12 C 0.519 3.481 13 O -0.586 6.586 14 N -0.704 5.704 15 C 0.116 3.884 16 H 0.094 0.906 17 C -0.120 4.120 18 C -0.114 4.114 19 H 0.086 0.914 20 C 0.084 3.916 21 O -0.601 6.601 22 C -0.144 4.144 23 C -0.142 4.142 24 H 0.396 0.604 25 H 0.106 0.894 26 H -0.286 1.286 27 H -0.298 1.298 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.420 0.580 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -3.301 0.789 4.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.187 4.187 3 Si 0.691 3.309 4 C -0.085 4.085 5 C -0.172 4.172 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.238 6.238 10 C -0.001 4.001 11 C -0.172 4.172 12 C 0.307 3.693 13 O -0.466 6.466 14 N -0.355 5.355 15 C 0.011 3.989 16 H 0.112 0.888 17 C -0.158 4.158 18 C -0.133 4.133 19 H 0.105 0.895 20 C 0.007 3.993 21 O -0.409 6.409 22 C -0.183 4.183 23 C -0.161 4.161 24 H 0.246 0.754 25 H 0.124 0.876 26 H -0.213 1.213 27 H -0.226 1.226 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.154 0.846 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.258 0.742 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.246 0.754 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.323 -2.107 0.489 3.174 hybrid contribution 0.193 -1.527 -0.388 1.587 sum -2.130 -3.634 0.101 4.213 Atomic orbital electron populations 1.86471 1.17116 1.82253 1.50454 1.25301 0.85387 1.11272 0.96762 0.93570 0.77795 0.74845 0.84725 1.20252 0.98005 0.93376 0.96915 1.21173 1.00846 1.00521 0.94694 1.21265 0.97123 0.93407 0.97507 1.21556 1.04291 0.96659 1.00520 1.19154 0.95837 0.82961 0.94982 1.85949 1.74689 1.20351 1.42859 1.22439 0.99078 0.93123 0.85505 1.21442 1.05518 0.93450 0.96789 1.20693 0.78601 0.82553 0.87462 1.90735 1.43041 1.63691 1.49137 1.45840 1.56966 1.09046 1.23677 1.22468 0.95287 0.93380 0.87764 0.88785 1.23292 0.95681 0.93781 1.03017 1.22339 0.97538 0.93613 0.99776 0.89541 1.22246 0.85586 0.93210 0.98255 1.86455 1.39534 1.32432 1.82518 1.23529 0.97748 0.96783 1.00208 1.20332 1.03978 0.94426 0.97334 0.75421 0.87648 1.21265 1.22618 0.83202 0.82856 0.84648 0.91564 0.91898 0.85639 0.85353 0.74200 0.89698 0.86921 0.92174 0.92113 0.75379 0.88545 0.92870 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.91 12.83 -148.98 -1.91 -2.82 16 2 C -0.08 -0.08 2.80 71.24 0.20 0.12 16 3 Si 0.79 -1.33 29.80 68.60 2.04 0.71 16 4 C -0.08 -0.20 5.35 -19.88 -0.11 -0.31 16 5 C -0.15 0.02 8.67 22.28 0.19 0.21 16 6 C -0.08 -0.04 10.04 22.26 0.22 0.19 16 7 C -0.21 -0.76 9.04 22.37 0.20 -0.56 16 8 C 0.12 0.69 6.69 22.51 0.15 0.84 16 9 O -0.32 -1.67 10.14 -92.36 -0.94 -2.60 16 10 C 0.07 0.15 4.03 71.98 0.29 0.44 16 11 C -0.13 0.47 6.07 29.85 0.18 0.65 16 12 C 0.52 0.70 7.83 87.66 0.69 1.38 16 13 O -0.59 -6.35 15.58 -3.04 -0.05 -6.40 16 14 N -0.70 2.80 5.35 -440.03 -2.36 0.45 16 15 C 0.12 -0.17 4.24 45.52 0.19 0.03 16 16 H 0.09 0.36 7.47 -2.39 -0.02 0.34 16 17 C -0.12 0.75 7.39 31.12 0.23 0.98 16 18 C -0.11 0.24 4.01 -10.27 -0.04 0.20 16 19 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 20 C 0.08 -0.31 6.88 71.98 0.50 0.19 16 21 O -0.60 -0.48 13.66 -148.98 -2.04 -2.52 16 22 C -0.14 0.10 7.43 31.12 0.23 0.33 16 23 C -0.14 -0.79 9.62 22.37 0.22 -0.57 16 24 H 0.40 -2.61 8.70 -74.06 -0.64 -3.26 16 25 H 0.11 0.24 7.96 -2.39 -0.02 0.22 16 26 H -0.29 -0.87 7.11 99.48 0.71 -0.17 16 27 H -0.30 -1.66 7.11 99.48 0.71 -0.95 16 28 H 0.15 -0.79 4.90 -2.91 -0.01 -0.80 16 29 H 0.15 -0.70 8.06 -2.91 -0.02 -0.72 16 30 H 0.14 0.31 6.30 -2.91 -0.02 0.29 16 31 H 0.07 0.21 7.61 -2.39 -0.02 0.19 16 32 H 0.06 0.23 7.63 -2.38 -0.02 0.21 16 33 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.42 -4.55 8.73 -92.71 -0.81 -5.36 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.11 -1.20 8.08 -2.39 -0.02 -1.22 16 38 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.06 -0.39 7.84 -2.39 -0.02 -0.41 16 40 H 0.40 -3.08 9.12 -74.05 -0.68 -3.75 16 41 H 0.10 -0.29 7.90 -2.39 -0.02 -0.31 16 42 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.13 0.75 8.06 -2.91 -0.02 0.72 16 Total: 0.00 -23.66 358.87 -2.94 -26.60 By element: Atomic # 1 Polarization: -16.49 SS G_CDS: -1.04 Total: -17.53 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 3.34 Total: 4.11 kcal Atomic # 7 Polarization: 2.80 SS G_CDS: -2.36 Total: 0.45 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -4.93 Total: -14.35 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.04 Total: 0.71 kcal Total: -23.66 -2.94 -26.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4549614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.414 kcal (2) G-P(sol) polarization free energy of solvation -23.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds