Wall clock time and date at job start Tue Mar 9 2021 13:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36547 * 126.64705 * 2 1 4 4 C 1.46657 * 125.98763 * 0.02562 * 3 2 1 5 5 O 1.21690 * 119.99773 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99503 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99260 * 179.97438 * 6 4 3 8 8 H 1.09003 * 112.85491 * 25.34098 * 7 6 4 9 9 C 1.53789 * 113.60887 * 156.52997 * 7 6 4 10 10 C 1.53787 * 87.07655 * 139.98339 * 9 7 6 11 11 H 1.08995 * 113.61326 * 89.11893 * 10 9 7 12 12 C 1.53002 * 113.61156 * 219.93269 * 10 9 7 13 13 O 1.42900 * 109.47175 * 184.99988 * 12 10 9 14 14 C 1.53780 * 113.61831 * 254.13718 * 7 6 4 15 15 O 1.34920 * 108.02073 * 179.76416 * 3 2 1 16 16 C 1.33932 * 109.38345 * 0.42899 * 15 3 2 17 17 C 1.50699 * 125.61038 * 179.82473 * 16 15 3 18 18 O 1.42897 * 109.47708 * 269.69569 * 17 16 15 19 19 C 1.35895 * 117.00208 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05238 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.94145 * 180.02562 * 20 19 18 22 22 C 1.38267 * 120.05771 * 0.02731 * 21 20 19 23 23 C 1.50699 * 119.94534 * 179.97438 * 22 21 20 24 24 O 1.42895 * 109.47158 * 299.99634 * 23 22 21 25 25 Si 1.86300 * 109.46944 * 180.02562 * 23 22 21 26 26 C 1.38271 * 120.10847 * 0.24836 * 22 21 20 27 27 C 1.38146 * 120.05540 * 359.45178 * 26 22 21 28 28 C 1.35126 * 108.76636 * 359.57167 * 16 15 3 29 29 H 1.09001 * 109.46798 * 270.00010 * 1 2 3 30 30 H 1.09004 * 109.47133 * 29.99422 * 1 2 3 31 31 H 1.08995 * 109.47717 * 149.99400 * 1 2 3 32 32 H 0.96989 * 120.00318 * 0.02562 * 6 4 3 33 33 H 1.09000 * 113.61622 * 254.53171 * 9 7 6 34 34 H 1.08999 * 113.61528 * 25.43632 * 9 7 6 35 35 H 1.08997 * 109.47530 * 305.00336 * 12 10 9 36 36 H 1.08998 * 109.46807 * 65.00121 * 12 10 9 37 37 H 0.96690 * 114.00147 * 180.02562 * 13 12 10 38 38 H 1.08996 * 113.61062 * 334.57436 * 14 7 6 39 39 H 1.08998 * 113.61192 * 105.47400 * 14 7 6 40 40 H 1.09001 * 109.46586 * 149.69847 * 17 16 15 41 41 H 1.08995 * 109.47495 * 29.70221 * 17 16 15 42 42 H 1.07993 * 120.03312 * 0.02562 * 20 19 18 43 43 H 1.07997 * 119.97419 * 179.97438 * 21 20 19 44 44 H 1.09000 * 109.47247 * 60.00087 * 23 22 21 45 45 H 0.96698 * 114.00355 * 300.00487 * 24 23 22 46 46 H 1.48506 * 110.00048 * 180.02562 * 25 23 22 47 47 H 1.48502 * 109.99996 * 301.31619 * 25 23 22 48 48 H 1.08003 * 119.96765 * 179.70258 * 26 22 21 49 49 H 1.08003 * 120.02761 * 180.25084 * 27 26 22 50 50 H 1.08000 * 126.43766 * 180.24188 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8843 2.4953 0.0005 5 8 0.6968 2.7614 0.0006 6 7 2.7973 3.4868 0.0010 7 6 2.3599 4.8850 0.0010 8 1 1.3670 5.0180 0.4305 9 6 3.4095 5.8586 0.5627 10 6 2.9977 6.8261 -0.5595 11 1 2.1788 7.4907 -0.2843 12 6 4.1768 7.5671 -1.1932 13 8 3.6876 8.5215 -2.1376 14 6 2.5441 5.5881 -1.3542 15 8 3.6005 0.6646 0.0053 16 6 3.6183 -0.6746 -0.0008 17 6 4.8549 -1.5357 -0.0015 18 8 5.2454 -1.8077 -1.3490 19 6 6.3506 -2.5780 -1.5275 20 6 6.7866 -2.8810 -2.8093 21 6 7.9101 -3.6647 -2.9882 22 6 8.5996 -4.1474 -1.8912 23 6 9.8245 -5.0026 -2.0893 24 8 9.4714 -6.1783 -2.8207 25 14 10.5172 -5.4891 -0.4297 26 6 8.1638 -3.8515 -0.6128 27 6 7.0444 -3.0631 -0.4285 28 6 2.3447 -1.1262 -0.0006 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 3.7436 3.2746 0.0006 33 1 3.1751 6.2242 1.5624 34 1 4.4336 5.4962 0.4728 35 1 4.7425 8.0816 -0.4165 36 1 4.8243 6.8524 -1.7011 37 1 4.3819 9.0290 -2.5795 38 1 3.3311 5.1516 -1.9691 39 1 1.6121 5.7356 -1.8998 40 1 4.6446 -2.4738 0.5121 41 1 5.6619 -1.0133 0.5122 42 1 6.2482 -2.5046 -3.6664 43 1 8.2497 -3.9013 -3.9857 44 1 10.5743 -4.4401 -2.6456 45 1 8.8069 -6.7285 -2.3840 46 1 11.7260 -6.3324 -0.6112 47 1 10.8586 -4.2748 0.3539 48 1 8.7013 -4.2338 0.2424 49 1 6.7068 -2.8289 0.5703 50 1 2.0305 -2.1595 -0.0011 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:15 Heat of formation + Delta-G solvation = -84.148229 kcal Electronic energy + Delta-G solvation = -32584.451687 eV Core-core repulsion = 27932.347699 eV Total energy + Delta-G solvation = -4652.103988 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.95499 -41.33502 -41.18790 -39.65121 -39.21112 -37.30387 -37.17448 -35.47801 -34.56872 -33.17146 -32.05390 -31.50745 -29.35771 -28.83018 -27.86793 -26.77642 -26.20051 -24.41888 -23.69314 -22.72933 -22.27701 -22.09317 -21.23694 -20.51051 -19.47271 -19.21730 -18.32964 -18.23252 -17.61738 -17.53335 -17.37126 -16.91313 -16.65081 -16.43932 -16.15435 -15.99899 -15.86446 -15.67954 -15.39531 -15.24500 -14.80397 -14.64904 -14.48762 -14.33788 -14.22257 -14.12062 -13.81908 -13.60704 -13.58718 -13.53316 -13.44065 -13.41065 -12.87366 -12.72287 -12.35811 -12.22549 -12.06715 -12.04701 -11.79210 -11.72191 -11.52195 -11.30493 -10.83701 -10.82215 -10.40411 -10.31254 -10.03629 -9.72727 -9.22568 -4.98857 -0.28809 0.28059 0.31518 0.95368 1.33300 1.34585 1.64312 1.91222 1.96818 1.98982 2.36890 2.66607 3.19049 3.28101 3.39099 3.56807 3.59398 3.62336 3.67169 3.71847 3.73985 3.81701 3.95764 3.97702 4.02394 4.09061 4.27975 4.31735 4.38484 4.40690 4.43442 4.46631 4.51261 4.58424 4.59671 4.64712 4.68654 4.70488 4.72525 4.76035 4.93051 4.95500 4.98187 4.99793 5.05501 5.16284 5.16412 5.26367 5.31737 5.45163 5.50978 5.66799 5.70098 6.29054 6.29351 6.80492 6.86891 6.87867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.096 4.096 4 C 0.602 3.398 5 O -0.547 6.547 6 N -0.698 5.698 7 C 0.116 3.884 8 H 0.105 0.895 9 C -0.120 4.120 10 C -0.109 4.109 11 H 0.093 0.907 12 C 0.085 3.915 13 O -0.599 6.599 14 C -0.145 4.145 15 O -0.161 6.161 16 C 0.011 3.989 17 C 0.136 3.864 18 O -0.327 6.327 19 C 0.125 3.875 20 C -0.163 4.163 21 C -0.061 4.061 22 C -0.160 4.160 23 C -0.072 4.072 24 O -0.558 6.558 25 Si 0.779 3.221 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.186 4.186 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.416 0.584 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.395 0.605 46 H -0.304 1.304 47 H -0.283 1.283 48 H 0.150 0.850 49 H 0.161 0.839 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -2.420 4.709 6.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.148 4.148 4 C 0.389 3.611 5 O -0.427 6.427 6 N -0.348 5.348 7 C 0.012 3.988 8 H 0.122 0.878 9 C -0.158 4.158 10 C -0.128 4.128 11 H 0.111 0.889 12 C 0.007 3.993 13 O -0.408 6.408 14 C -0.184 4.184 15 O -0.057 6.057 16 C -0.041 4.041 17 C 0.062 3.938 18 O -0.242 6.242 19 C 0.080 3.920 20 C -0.181 4.181 21 C -0.080 4.080 22 C -0.161 4.161 23 C -0.182 4.182 24 O -0.366 6.366 25 Si 0.685 3.315 26 C -0.095 4.095 27 C -0.219 4.219 28 C -0.205 4.205 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.253 0.747 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.121 0.879 45 H 0.245 0.755 46 H -0.233 1.233 47 H -0.210 1.210 48 H 0.168 0.832 49 H 0.178 0.822 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.561 -1.873 4.897 6.338 hybrid contribution 0.779 0.639 -0.919 1.364 sum 4.340 -1.234 3.978 6.015 Atomic orbital electron populations 1.20454 0.87488 1.03794 1.03425 1.20988 0.98439 0.91374 0.99011 1.21849 0.81778 0.94835 1.16295 1.16684 0.85687 0.82435 0.76306 1.90853 1.16961 1.82784 1.52099 1.45843 1.09998 1.05649 1.73277 1.22646 1.00118 0.78171 0.97899 0.87751 1.23294 0.99591 0.93915 0.98976 1.22351 0.98930 0.94909 0.96649 0.88910 1.22227 0.94829 0.90895 0.91343 1.86448 1.39726 1.55377 1.59219 1.23561 1.02058 0.96050 0.96707 1.83955 1.27992 1.22652 1.71124 1.22434 0.97026 0.80254 1.04385 1.21267 0.91605 0.98232 0.82699 1.86108 1.42367 1.66454 1.29259 1.19083 0.86528 0.91711 0.94663 1.20624 0.99151 1.02938 0.95434 1.20909 0.93258 0.94287 0.99497 1.20343 0.99365 1.02605 0.93786 1.25137 0.97229 0.87391 1.08396 1.86462 1.64465 1.35069 1.50643 0.93773 0.81683 0.80430 0.75579 1.21053 0.95575 0.96473 0.96362 1.21487 0.98409 1.03028 0.98971 1.21895 0.90851 1.01241 1.06494 0.90020 0.91334 0.89401 0.74726 0.89077 0.87390 0.91982 0.92495 0.75377 0.89132 0.92253 0.84955 0.87921 0.85150 0.84940 0.87950 0.75497 1.23289 1.20969 0.83243 0.82161 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 9.82 71.23 0.70 0.36 16 2 C -0.10 -0.47 6.20 -19.74 -0.12 -0.59 16 3 C -0.10 -0.60 7.13 24.07 0.17 -0.43 16 4 C 0.60 4.67 7.79 86.44 0.67 5.35 16 5 O -0.55 -7.51 14.35 -4.32 -0.06 -7.57 16 6 N -0.70 -1.15 5.36 -444.00 -2.38 -3.53 16 7 C 0.12 0.10 4.21 45.52 0.19 0.29 16 8 H 0.10 0.46 7.50 -2.39 -0.02 0.44 16 9 C -0.12 0.54 7.39 31.13 0.23 0.77 16 10 C -0.11 0.11 4.01 -10.21 -0.04 0.07 16 11 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 12 C 0.08 -0.20 6.89 71.98 0.50 0.29 16 13 O -0.60 -0.98 13.66 -148.98 -2.03 -3.01 16 14 C -0.15 -0.20 7.45 31.18 0.23 0.03 16 15 O -0.16 -0.55 10.40 -5.11 -0.05 -0.61 16 16 C 0.01 0.00 6.94 24.97 0.17 0.18 16 17 C 0.14 -0.73 5.27 71.24 0.38 -0.35 16 18 O -0.33 -0.23 10.12 -92.37 -0.93 -1.16 16 19 C 0.12 -0.01 6.69 22.51 0.15 0.14 16 20 C -0.16 -0.23 9.99 22.37 0.22 0.00 16 21 C -0.06 -0.03 9.60 22.25 0.21 0.18 16 22 C -0.16 0.23 5.39 -19.85 -0.11 0.12 16 23 C -0.07 0.12 2.82 71.24 0.20 0.32 16 24 O -0.56 0.32 12.76 -148.98 -1.90 -1.58 16 25 Si 0.78 -3.00 29.78 68.60 2.04 -0.95 16 26 C -0.08 0.33 8.66 22.26 0.19 0.52 16 27 C -0.20 0.89 9.04 22.37 0.20 1.09 16 28 C -0.19 -0.08 10.72 22.07 0.24 0.15 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.07 0.55 6.44 -2.38 -0.02 0.53 16 31 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.42 -1.14 8.47 -92.72 -0.79 -1.93 16 33 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.11 -0.85 8.07 -2.39 -0.02 -0.87 16 35 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.06 -0.25 7.86 -2.39 -0.02 -0.27 16 37 H 0.40 -2.74 9.12 -74.06 -0.68 -3.41 16 38 H 0.09 0.03 7.91 -2.39 -0.02 0.01 16 39 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.13 -1.51 7.66 -2.39 -0.02 -1.53 16 41 H 0.10 -0.89 7.67 -2.39 -0.02 -0.91 16 42 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 43 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 44 H 0.10 0.00 7.96 -2.39 -0.02 -0.02 16 45 H 0.40 -3.45 8.70 -74.06 -0.64 -4.09 16 46 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 47 H -0.28 -0.05 7.11 99.48 0.71 0.66 16 48 H 0.15 -1.31 4.87 -2.91 -0.01 -1.33 16 49 H 0.16 -1.70 6.30 -2.91 -0.02 -1.72 16 50 H 0.18 -0.93 8.06 -2.91 -0.02 -0.95 16 Total: 0.00 -24.28 418.20 -1.99 -26.27 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -1.06 Total: -16.33 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.39 Total: 8.48 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -2.38 Total: -3.53 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -4.99 Total: -13.93 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.04 Total: -0.95 kcal Total: -24.28 -1.99 -26.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.878 kcal (2) G-P(sol) polarization free energy of solvation -24.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds