Wall clock time and date at job start Tue Mar 9 2021 13:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35994 * 116.99903 * 2 1 4 4 C 1.39155 * 120.06774 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07763 * 359.95670 * 4 3 2 6 6 C 1.42899 * 117.00323 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.08999 * 112.85394 * 25.33225 * 10 9 7 12 12 C 1.53787 * 113.61411 * 156.52516 * 10 9 7 13 13 C 1.53781 * 87.08089 * 139.97909 * 12 10 9 14 14 H 1.09001 * 113.61092 * 89.20036 * 13 12 10 15 15 C 1.52998 * 113.61673 * 220.01938 * 13 12 10 16 16 O 1.42894 * 109.47218 * 185.00118 * 15 13 12 17 17 C 1.53782 * 113.61561 * 254.13328 * 10 9 7 18 18 C 1.38571 * 119.85169 * 180.23057 * 4 3 2 19 19 C 1.38244 * 119.99477 * 359.48891 * 18 4 3 20 20 N 1.48008 * 119.92327 * 180.25430 * 19 18 4 21 21 O 1.21801 * 119.99765 * 0.25697 * 20 19 18 22 22 O 1.21795 * 120.00033 * 180.25650 * 20 19 18 23 23 C 1.38247 * 120.15034 * 0.51735 * 19 18 4 24 24 C 1.50694 * 119.92805 * 179.76413 * 23 19 18 25 25 O 1.42909 * 109.47313 * 74.97400 * 24 23 19 26 26 Si 1.86301 * 109.47208 * 194.97301 * 24 23 19 27 27 C 1.38249 * 120.14401 * 359.73796 * 23 19 18 28 28 H 1.09000 * 109.47340 * 300.00509 * 1 2 3 29 29 H 1.09000 * 109.46890 * 59.99947 * 1 2 3 30 30 H 1.08998 * 109.47627 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46798 * 59.99577 * 6 5 4 32 32 H 1.08998 * 109.46844 * 300.00081 * 6 5 4 33 33 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 34 34 H 1.08993 * 113.61473 * 254.53188 * 12 10 9 35 35 H 1.09003 * 113.61107 * 25.35156 * 12 10 9 36 36 H 1.09000 * 109.47376 * 305.00397 * 15 13 12 37 37 H 1.08998 * 109.47061 * 64.99828 * 15 13 12 38 38 H 0.96703 * 113.99467 * 180.02562 * 16 15 13 39 39 H 1.08998 * 113.61082 * 334.56688 * 17 10 9 40 40 H 1.08997 * 113.61349 * 105.47095 * 17 10 9 41 41 H 1.07994 * 119.99737 * 179.72422 * 18 4 3 42 42 H 1.08999 * 109.47053 * 314.97250 * 24 23 19 43 43 H 0.96701 * 113.99664 * 60.00225 * 25 24 23 44 44 H 1.48497 * 109.99736 * 58.67954 * 26 24 23 45 45 H 1.48500 * 109.99796 * 179.97438 * 26 24 23 46 46 H 1.08001 * 119.99547 * 179.97438 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2862 0.0005 5 8 4.1796 0.1476 0.0020 6 6 5.6003 0.3005 0.0019 7 6 6.2518 -1.0584 0.0042 8 8 5.5668 -2.0593 0.0062 9 7 7.5957 -1.1614 0.0102 10 6 8.2289 -2.4824 0.0185 11 1 7.5951 -3.2584 -0.4106 12 6 9.6630 -2.4816 -0.5369 13 6 10.0164 -3.4654 0.5909 14 1 9.8729 -4.5111 0.3190 15 6 11.3804 -3.1997 1.2310 16 8 11.6692 -4.2275 2.1808 17 6 8.8370 -2.8655 1.3780 18 6 4.0604 2.5233 0.0054 19 6 3.3030 3.6798 -0.0010 20 7 3.9716 5.0002 -0.0015 21 8 5.1878 5.0670 -0.0011 22 8 3.3057 6.0200 -0.0025 23 6 1.9225 3.6057 -0.0015 24 6 1.1018 4.8696 -0.0031 25 8 1.1358 5.4580 -1.3050 26 14 -0.6597 4.4668 0.4505 27 6 1.2933 2.3747 -0.0010 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 5.9065 0.8514 0.8913 32 1 5.9066 0.8492 -0.8888 33 1 8.1434 -0.3609 0.0088 34 1 9.7451 -2.9131 -1.5344 35 1 10.1642 -1.5175 -0.4502 36 1 12.1492 -3.1927 0.4583 37 1 11.3632 -2.2335 1.7351 38 1 12.5208 -4.1227 2.6269 39 1 9.1126 -2.0070 1.9905 40 1 8.2533 -3.6065 1.9241 41 1 5.1386 2.5838 0.0103 42 1 1.5128 5.5706 0.7233 43 1 0.7844 4.8887 -2.0032 44 1 -0.7054 3.8252 1.7889 45 1 -1.4793 5.7051 0.4530 46 1 0.2147 2.3197 -0.0009 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_4549636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:22 Heat of formation + Delta-G solvation = -124.170917 kcal Electronic energy + Delta-G solvation = -33570.389080 eV Core-core repulsion = 28625.749182 eV Total energy + Delta-G solvation = -4944.639897 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.144 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.40970 -42.12955 -41.33350 -40.17315 -39.36086 -39.10991 -37.74546 -37.26173 -37.11784 -34.71735 -32.68351 -32.54524 -30.25159 -28.87580 -28.33174 -27.90815 -26.73893 -25.84047 -24.17673 -23.39662 -23.02764 -21.77917 -20.78149 -20.70083 -19.85100 -19.51299 -18.74459 -18.67626 -18.43670 -18.18197 -17.76273 -17.70377 -17.45048 -17.10933 -16.86308 -16.42615 -16.33913 -16.09085 -15.76728 -15.73794 -15.21451 -15.18248 -14.84295 -14.46821 -14.38191 -13.97989 -13.89737 -13.50552 -13.46840 -13.39665 -13.02712 -12.71654 -12.67661 -12.50213 -12.45153 -12.34255 -12.32101 -12.27763 -12.21755 -11.78738 -11.75418 -11.49016 -11.07634 -10.80542 -10.53923 -10.46466 -10.17280 -9.49894 -5.13853 -1.37070 -0.44180 0.15692 0.29804 1.12559 1.23881 1.35394 1.57025 1.88642 1.89668 1.93488 2.34172 2.97454 3.16161 3.22960 3.26487 3.40614 3.45721 3.52058 3.55790 3.66769 3.75972 3.86589 3.93086 3.95268 4.01727 4.05235 4.10718 4.22151 4.38597 4.40973 4.42128 4.44026 4.54460 4.62913 4.69219 4.72607 4.75434 4.80111 4.81363 4.98479 5.04337 5.21424 5.24554 5.48367 5.59261 6.05606 6.38225 6.46251 6.71313 6.89081 7.06163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.171 3.829 4 C 0.100 3.900 5 O -0.291 6.291 6 C 0.027 3.973 7 C 0.515 3.485 8 O -0.568 6.568 9 N -0.698 5.698 10 C 0.118 3.882 11 H 0.093 0.907 12 C -0.118 4.118 13 C -0.113 4.113 14 H 0.086 0.914 15 C 0.084 3.916 16 O -0.601 6.601 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.046 4.046 20 N 0.035 4.965 21 O -0.186 6.186 22 O -0.166 6.166 23 C -0.040 4.040 24 C -0.091 4.091 25 O -0.536 6.536 26 Si 0.787 3.213 27 C -0.163 4.163 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.422 0.578 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.183 0.817 42 H 0.115 0.885 43 H 0.393 0.607 44 H -0.272 1.272 45 H -0.291 1.291 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -2.052 -2.005 2.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.122 3.878 4 C 0.053 3.947 5 O -0.204 6.204 6 C -0.050 4.050 7 C 0.301 3.699 8 O -0.446 6.446 9 N -0.352 5.352 10 C 0.014 3.986 11 H 0.111 0.889 12 C -0.156 4.156 13 C -0.132 4.132 14 H 0.104 0.896 15 C 0.007 3.993 16 O -0.410 6.410 17 C -0.183 4.183 18 C -0.129 4.129 19 C -0.130 4.130 20 N 0.548 4.452 21 O -0.397 6.397 22 O -0.379 6.379 23 C -0.042 4.042 24 C -0.199 4.199 25 O -0.343 6.343 26 Si 0.689 3.311 27 C -0.181 4.181 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.261 0.739 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.201 0.799 42 H 0.132 0.868 43 H 0.242 0.758 44 H -0.198 1.198 45 H -0.218 1.218 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.475 -3.387 -1.325 3.925 hybrid contribution 1.710 1.290 0.551 2.212 sum 0.235 -2.097 -0.775 2.248 Atomic orbital electron populations 1.23812 0.74675 1.07060 1.04205 1.86336 1.24877 1.24527 1.86187 1.18682 0.89159 0.86402 0.93572 1.17978 0.88844 0.85105 1.02804 1.86305 1.18490 1.26865 1.88727 1.22924 0.78802 0.96007 1.07311 1.20401 0.83264 0.90435 0.75767 1.90781 1.63997 1.39920 1.49949 1.45685 1.05085 1.10140 1.74262 1.22496 0.93491 0.85051 0.97610 0.88861 1.23291 0.92872 1.00849 0.98577 1.22361 0.93882 1.00009 0.96969 0.89558 1.22246 0.95654 0.90221 0.91187 1.86453 1.44218 1.51556 1.58744 1.23570 0.96898 1.01073 0.96770 1.20902 1.03011 0.88132 1.00902 1.20554 0.92762 0.81911 1.17791 1.43718 1.00831 1.03441 0.97170 1.94500 0.96507 1.94120 1.54538 1.94577 1.64412 1.25397 1.53544 1.20226 0.91066 0.97664 0.95250 1.25765 1.10600 0.92760 0.90798 1.86671 1.87125 1.44590 1.15908 0.94389 0.71762 0.82144 0.82800 1.21083 1.01779 0.88073 1.07177 0.90188 0.88775 0.86122 0.85508 0.85214 0.73908 0.89544 0.86657 0.92139 0.92052 0.75380 0.88382 0.92910 0.79942 0.86802 0.75791 1.19804 1.21782 0.78938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 0.05 10.28 -79.62 -0.82 -0.77 16 3 C 0.17 -0.17 6.70 22.57 0.15 -0.02 16 4 C 0.10 0.07 6.70 22.57 0.15 0.22 16 5 O -0.29 -1.03 9.45 -67.09 -0.63 -1.66 16 6 C 0.03 -0.11 5.22 71.24 0.37 0.26 16 7 C 0.52 0.97 7.91 87.66 0.69 1.66 16 8 O -0.57 -7.70 16.12 16.00 0.26 -7.44 16 9 N -0.70 3.35 5.36 -440.03 -2.36 0.99 16 10 C 0.12 -0.23 4.21 45.52 0.19 -0.03 16 11 H 0.09 0.34 7.50 -2.39 -0.02 0.32 16 12 C -0.12 0.83 7.39 31.12 0.23 1.06 16 13 C -0.11 0.29 4.01 -10.21 -0.04 0.25 16 14 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 15 C 0.08 -0.34 6.89 71.98 0.50 0.16 16 16 O -0.60 -0.34 13.66 -148.98 -2.03 -2.38 16 17 C -0.14 0.15 7.45 31.18 0.23 0.38 16 18 C -0.11 0.07 8.54 22.35 0.19 0.26 16 19 C -0.05 -0.15 6.85 36.38 0.25 0.10 16 20 N 0.04 0.33 4.45 -46.46 -0.21 0.13 16 21 O -0.19 -1.93 18.44 18.88 0.35 -1.58 16 22 O -0.17 -2.11 14.62 25.11 0.37 -1.74 16 23 C -0.04 0.03 5.26 -19.86 -0.10 -0.08 16 24 C -0.09 0.00 1.74 71.23 0.12 0.12 16 25 O -0.54 -0.57 11.80 -129.63 -1.53 -2.09 16 26 Si 0.79 -4.19 29.91 68.60 2.05 -2.14 16 27 C -0.16 0.85 7.65 22.35 0.17 1.02 16 28 H 0.08 -1.03 7.66 -2.39 -0.02 -1.05 16 29 H 0.09 -1.42 7.66 -2.39 -0.02 -1.44 16 30 H 0.12 -1.36 8.14 -2.39 -0.02 -1.38 16 31 H 0.13 -1.27 7.65 -2.38 -0.02 -1.29 16 32 H 0.13 -1.36 7.68 -2.39 -0.02 -1.38 16 33 H 0.42 -5.33 8.71 -92.71 -0.81 -6.14 16 34 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.12 -1.36 8.07 -2.39 -0.02 -1.38 16 36 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.06 -0.43 7.85 -2.39 -0.02 -0.45 16 38 H 0.40 -3.14 9.12 -74.05 -0.68 -3.82 16 39 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 40 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.18 -0.96 5.85 -2.91 -0.02 -0.98 16 42 H 0.11 0.55 6.07 -2.39 -0.01 0.54 16 43 H 0.39 -3.52 8.70 -74.06 -0.64 -4.16 16 44 H -0.27 0.52 7.11 99.48 0.71 1.23 16 45 H -0.29 -0.80 7.11 99.48 0.71 -0.10 16 46 H 0.19 -2.42 3.36 -2.91 -0.01 -2.43 16 Total: 0.00 -35.94 389.12 -1.34 -37.28 By element: Atomic # 1 Polarization: -24.10 SS G_CDS: -1.00 Total: -25.10 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 4.22 Total: 6.52 kcal Atomic # 7 Polarization: 3.69 SS G_CDS: -2.57 Total: 1.12 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -4.04 Total: -17.68 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.05 Total: -2.14 kcal Total: -35.94 -1.34 -37.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4549636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.895 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds