Wall clock time and date at job start Tue Mar 9 2021 13:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47333 * 2 1 4 4 C 1.50702 * 109.46948 * 240.00065 * 2 1 3 5 5 C 1.38244 * 119.94676 * 120.02673 * 4 2 1 6 6 C 1.38165 * 120.05647 * 179.72367 * 5 4 2 7 7 C 1.38713 * 119.94385 * 0.48581 * 6 5 4 8 8 O 1.35899 * 120.05480 * 179.79067 * 7 6 5 9 9 C 1.42899 * 117.00179 * 359.72178 * 8 7 6 10 10 C 1.50702 * 109.47182 * 179.97438 * 9 8 7 11 11 O 1.21285 * 119.99662 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99875 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99720 * 180.02562 * 12 10 9 14 14 H 1.09003 * 112.91274 * 23.75104 * 13 12 10 15 15 C 1.53787 * 113.61519 * 155.00064 * 13 12 10 16 16 C 1.53781 * 87.07987 * 139.98030 * 15 13 12 17 17 H 1.09002 * 113.61228 * 89.11929 * 16 15 13 18 18 C 1.52995 * 113.61293 * 219.93573 * 16 15 13 19 19 O 1.42899 * 109.47232 * 183.47060 * 18 16 15 20 20 C 1.53779 * 113.61356 * 252.49922 * 13 12 10 21 21 C 1.38747 * 119.88581 * 359.50862 * 7 6 5 22 22 N 1.48003 * 120.02697 * 180.27480 * 21 7 6 23 23 O 1.21806 * 120.00308 * 180.02562 * 22 21 7 24 24 O 1.21802 * 120.00026 * 0.02562 * 22 21 7 25 25 C 1.38125 * 119.94728 * 0.26353 * 21 7 6 26 26 H 0.96704 * 113.99348 * 300.00483 * 1 2 3 27 27 H 1.09000 * 109.47186 * 120.00027 * 2 1 3 28 28 H 1.48498 * 110.00185 * 300.00112 * 3 2 1 29 29 H 1.48502 * 110.00023 * 61.32078 * 3 2 1 30 30 H 1.07999 * 119.97264 * 359.97058 * 5 4 2 31 31 H 1.07996 * 120.03026 * 180.25248 * 6 5 4 32 32 H 1.09004 * 109.46831 * 60.00069 * 9 8 7 33 33 H 1.08992 * 109.46833 * 299.99798 * 9 8 7 34 34 H 0.96999 * 119.99702 * 0.02562 * 12 10 9 35 35 H 1.09005 * 113.61051 * 25.43434 * 15 13 12 36 36 H 1.08993 * 113.61359 * 254.53472 * 15 13 12 37 37 H 1.09005 * 109.47501 * 303.47224 * 18 16 15 38 38 H 1.09004 * 109.47494 * 63.47236 * 18 16 15 39 39 H 0.96701 * 114.00201 * 179.97438 * 19 18 16 40 40 H 1.09003 * 113.61775 * 105.47767 * 20 13 12 41 41 H 1.08996 * 113.61960 * 334.56493 * 20 13 12 42 42 H 1.08001 * 119.97288 * 179.97438 * 25 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7264 -0.0377 -2.1395 6 6 3.1929 -0.6884 -3.2655 7 6 2.8544 -2.0150 -3.4886 8 8 3.3085 -2.6560 -4.5976 9 6 4.1253 -1.9010 -5.4946 10 6 4.5320 -2.7705 -6.6564 11 8 4.1586 -3.9231 -6.7110 12 7 5.3097 -2.2669 -7.6352 13 6 5.7045 -3.1119 -8.7649 14 1 5.0193 -3.9429 -8.9330 15 6 6.0365 -2.3197 -10.0404 16 6 7.1984 -3.3040 -10.2549 17 1 6.9217 -4.1874 -10.8303 18 6 8.4784 -2.6393 -10.7654 19 8 9.4696 -3.6392 -11.0097 20 6 7.1840 -3.5301 -8.7338 21 6 2.0563 -2.6880 -2.5747 22 7 1.6983 -4.1052 -2.8066 23 8 0.9973 -4.6955 -2.0043 24 8 2.1047 -4.6814 -3.7998 25 6 1.5964 -2.0343 -1.4482 26 1 -0.3932 0.4418 0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5616 2.4679 -1.2084 29 1 1.5880 2.4585 1.2243 30 1 2.9865 0.9963 -1.9673 31 1 3.8174 -0.1637 -3.9732 32 1 5.0165 -1.5551 -4.9708 33 1 3.5635 -1.0423 -5.8621 34 1 5.6079 -1.3449 -7.5916 35 1 6.3606 -1.2970 -9.8472 36 1 5.2641 -2.3823 -10.8068 37 1 8.2658 -2.1046 -11.6912 38 1 8.8469 -1.9376 -10.0170 39 1 10.3095 -3.2888 -11.3366 40 1 7.3379 -4.5700 -8.4456 41 1 7.8218 -2.8384 -8.1835 42 1 0.9748 -2.5577 -0.7368 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:26 Heat of formation + Delta-G solvation = -95.613395 kcal Electronic energy + Delta-G solvation = -28839.092770 eV Core-core repulsion = 24369.911031 eV Total energy + Delta-G solvation = -4469.181739 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30067 -41.80593 -41.10933 -39.91735 -39.11352 -37.63560 -37.51396 -37.21020 -34.67859 -33.51158 -32.34957 -30.27674 -28.41692 -27.82709 -26.70650 -26.52978 -24.35240 -23.31345 -22.63328 -21.72308 -20.66431 -20.43949 -19.78795 -19.11953 -18.72941 -18.60041 -18.40606 -18.13250 -17.58848 -17.53406 -17.07952 -16.51857 -16.33857 -15.95509 -15.82005 -15.62677 -15.36399 -15.18696 -14.54346 -14.29827 -14.16591 -13.90762 -13.74868 -13.44422 -13.36966 -13.14616 -12.72646 -12.71003 -12.67967 -12.35291 -12.31329 -12.28191 -12.12521 -11.90333 -11.72148 -11.45770 -11.00356 -10.83200 -10.77794 -10.61548 -10.11779 -9.76982 -4.92796 -1.31478 -0.23953 0.15429 0.34665 1.21797 1.26489 1.44052 1.63599 1.98206 2.02876 2.33953 3.06117 3.20297 3.26681 3.30736 3.45417 3.53879 3.60456 3.70263 3.71268 3.79994 3.86827 3.95243 4.03375 4.05189 4.23835 4.32744 4.44533 4.46648 4.51679 4.62273 4.65493 4.71887 4.78260 4.83210 4.85678 5.02320 5.07373 5.07795 5.18717 5.25036 5.54080 5.76344 6.41773 6.46706 6.52990 6.92204 7.16853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.095 4.095 3 Si 0.788 3.212 4 C -0.112 4.112 5 C -0.006 4.006 6 C -0.187 4.187 7 C 0.193 3.807 8 O -0.292 6.292 9 C 0.024 3.976 10 C 0.506 3.494 11 O -0.569 6.569 12 N -0.695 5.695 13 C 0.117 3.883 14 H 0.087 0.913 15 C -0.116 4.116 16 C -0.115 4.115 17 H 0.081 0.919 18 C 0.085 3.915 19 O -0.602 6.602 20 C -0.143 4.143 21 C -0.105 4.105 22 N 0.035 4.965 23 O -0.201 6.201 24 O -0.175 6.175 25 C -0.004 4.004 26 H 0.399 0.601 27 H 0.099 0.901 28 H -0.279 1.279 29 H -0.292 1.292 30 H 0.188 0.812 31 H 0.209 0.791 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.425 0.575 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 16.538 0.121 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.202 4.202 3 Si 0.690 3.310 4 C -0.114 4.114 5 C -0.023 4.023 6 C -0.206 4.206 7 C 0.143 3.857 8 O -0.202 6.202 9 C -0.052 4.052 10 C 0.292 3.708 11 O -0.447 6.447 12 N -0.350 5.350 13 C 0.012 3.988 14 H 0.105 0.895 15 C -0.154 4.154 16 C -0.134 4.134 17 H 0.100 0.900 18 C 0.008 3.992 19 O -0.411 6.411 20 C -0.182 4.182 21 C -0.191 4.191 22 N 0.545 4.455 23 O -0.409 6.409 24 O -0.388 6.388 25 C -0.024 4.024 26 H 0.250 0.750 27 H 0.117 0.883 28 H -0.206 1.206 29 H -0.219 1.219 30 H 0.204 0.796 31 H 0.226 0.774 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.264 0.736 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.246 0.754 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.604 16.258 -0.219 17.949 hybrid contribution -1.106 -0.753 0.358 1.385 sum 6.498 15.505 0.140 16.812 Atomic orbital electron populations 1.86547 1.18470 1.81011 1.51285 1.25255 0.84375 1.13170 0.97401 0.94225 0.89233 0.70088 0.77444 1.19474 1.01199 0.91951 0.98741 1.21669 0.89884 1.01057 0.89725 1.21800 1.06102 0.90476 1.02191 1.18952 0.89703 0.92075 0.84966 1.86472 1.63665 1.39748 1.30361 1.23152 0.98251 0.94410 0.89419 1.20618 0.78341 0.87686 0.84131 1.90850 1.55382 1.20408 1.78028 1.45600 1.51232 1.16567 1.21561 1.22449 0.95370 0.94858 0.86161 0.89527 1.23288 0.96927 0.99561 0.95591 1.22334 0.95228 0.99903 0.95983 0.90027 1.22244 0.87391 0.89640 0.99918 1.86462 1.27531 1.37780 1.89310 1.23533 0.96374 1.01822 0.96421 1.20853 1.13517 0.81560 1.03136 1.43883 0.98216 1.03967 0.99462 1.94493 1.35919 1.68344 1.42143 1.94681 1.56396 1.69313 1.18429 1.20836 0.93902 0.94880 0.92743 0.74967 0.88318 1.20602 1.21902 0.79566 0.77374 0.83452 0.83834 0.73639 0.86183 0.89907 0.92206 0.91663 0.75375 0.93332 0.87875 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.89 12.74 -148.98 -1.90 -1.00 16 2 C -0.10 0.59 2.81 71.24 0.20 0.79 16 3 Si 0.79 -7.97 29.78 68.60 2.04 -5.92 16 4 C -0.11 0.37 5.42 -19.85 -0.11 0.26 16 5 C -0.01 0.06 8.66 22.25 0.19 0.25 16 6 C -0.19 1.77 9.04 22.37 0.20 1.98 16 7 C 0.19 0.37 6.67 22.51 0.15 0.53 16 8 O -0.29 -1.62 7.68 -63.39 -0.49 -2.11 16 9 C 0.02 -0.17 5.22 71.24 0.37 0.20 16 10 C 0.51 0.93 7.91 87.66 0.69 1.62 16 11 O -0.57 -9.33 16.10 15.99 0.26 -9.08 16 12 N -0.70 4.19 5.35 -440.03 -2.36 1.83 16 13 C 0.12 -0.20 4.24 45.52 0.19 0.00 16 14 H 0.09 0.48 7.47 -2.39 -0.02 0.46 16 15 C -0.12 0.86 7.39 31.12 0.23 1.09 16 16 C -0.12 0.30 4.01 -10.27 -0.04 0.26 16 17 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 18 C 0.09 -0.40 6.87 71.98 0.49 0.09 16 19 O -0.60 -0.16 13.66 -148.98 -2.03 -2.20 16 20 C -0.14 0.17 7.43 31.12 0.23 0.40 16 21 C -0.11 -0.92 6.87 36.47 0.25 -0.67 16 22 N 0.03 0.63 4.45 -46.25 -0.21 0.42 16 23 O -0.20 -3.98 18.45 18.88 0.35 -3.64 16 24 O -0.17 -4.04 17.24 25.60 0.44 -3.59 16 25 C 0.00 -0.02 9.12 22.25 0.20 0.19 16 26 H 0.40 -3.72 8.74 -74.05 -0.65 -4.36 16 27 H 0.10 -0.91 7.96 -2.39 -0.02 -0.93 16 28 H -0.28 1.43 7.11 99.48 0.71 2.14 16 29 H -0.29 1.13 7.11 99.48 0.71 1.84 16 30 H 0.19 -3.21 4.87 -2.91 -0.01 -3.23 16 31 H 0.21 -4.22 6.30 -2.91 -0.02 -4.24 16 32 H 0.15 -2.40 7.65 -2.39 -0.02 -2.41 16 33 H 0.14 -2.24 7.67 -2.39 -0.02 -2.26 16 34 H 0.42 -6.64 8.73 -92.71 -0.81 -7.45 16 35 H 0.12 -1.60 8.08 -2.38 -0.02 -1.62 16 36 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.06 -0.43 8.14 -2.38 -0.02 -0.45 16 38 H 0.07 -0.55 7.88 -2.39 -0.02 -0.57 16 39 H 0.40 -3.34 9.12 -74.06 -0.68 -4.02 16 40 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.10 -0.50 7.92 -2.39 -0.02 -0.52 16 42 H 0.15 0.78 7.61 -2.91 -0.02 0.76 16 Total: 0.00 -43.85 363.91 -1.61 -45.46 By element: Atomic # 1 Polarization: -26.17 SS G_CDS: -0.98 Total: -27.15 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 3.26 Total: 6.98 kcal Atomic # 7 Polarization: 4.82 SS G_CDS: -2.56 Total: 2.26 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -3.37 Total: -21.62 kcal Atomic # 14 Polarization: -7.97 SS G_CDS: 2.04 Total: -5.92 kcal Total: -43.85 -1.61 -45.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.156 kcal (2) G-P(sol) polarization free energy of solvation -43.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds