Wall clock time and date at job start Tue Mar 9 2021 13:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47433 * 2 1 4 4 C 1.50698 * 109.47365 * 239.99713 * 2 1 3 5 5 C 1.38245 * 119.97109 * 120.00131 * 4 2 1 6 6 C 1.38288 * 120.10837 * 179.97438 * 5 4 2 7 7 C 1.38129 * 120.05726 * 0.04595 * 6 5 4 8 8 C 1.38755 * 119.94079 * 359.97438 * 7 6 5 9 9 O 1.35896 * 120.04851 * 180.02562 * 8 7 6 10 10 C 1.42898 * 117.00609 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.47423 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99922 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99749 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99525 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.91148 * 23.75262 * 14 13 11 16 16 C 1.53786 * 113.61370 * 155.00031 * 14 13 11 17 17 C 1.53781 * 87.17350 * 140.02367 * 16 14 13 18 18 H 1.09003 * 113.61462 * 89.16045 * 17 16 14 19 19 C 1.52991 * 113.61529 * 219.97788 * 17 16 14 20 20 O 1.42901 * 109.47409 * 185.00009 * 19 17 16 21 21 C 1.53781 * 87.08070 * 334.52830 * 17 16 14 22 22 C 1.38167 * 119.96961 * 300.30237 * 4 2 1 23 23 H 0.96700 * 113.99624 * 59.99907 * 1 2 3 24 24 H 1.09007 * 109.46805 * 119.99836 * 2 1 3 25 25 H 1.48503 * 109.99755 * 59.99361 * 3 2 1 26 26 H 1.48495 * 110.00142 * 181.31747 * 3 2 1 27 27 H 1.08000 * 119.94631 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.97042 * 180.02562 * 6 5 4 29 29 H 1.07997 * 120.02425 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47167 * 60.00240 * 10 9 8 31 31 H 1.09005 * 109.47174 * 300.00168 * 10 9 8 32 32 H 0.97000 * 119.99938 * 359.97438 * 13 11 10 33 33 H 1.09002 * 113.61357 * 25.43283 * 16 14 13 34 34 H 1.09002 * 113.61608 * 254.61445 * 16 14 13 35 35 H 1.08997 * 109.47550 * 304.99814 * 19 17 16 36 36 H 1.09002 * 109.47334 * 65.00084 * 19 17 16 37 37 H 0.96701 * 114.00364 * 179.97438 * 20 19 17 38 38 H 1.09005 * 113.61471 * 139.98321 * 21 17 16 39 39 H 1.09003 * 113.61469 * 270.88099 * 21 17 16 40 40 H 1.07999 * 120.03238 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7261 -0.0381 -2.1400 6 6 3.1892 -0.6874 -3.2697 7 6 2.8576 -2.0097 -3.4925 8 6 2.0597 -2.6865 -2.5812 9 8 1.7325 -3.9876 -2.7979 10 6 2.2454 -4.5966 -3.9845 11 6 1.7814 -6.0288 -4.0551 12 8 1.0810 -6.4833 -3.1755 13 7 2.1449 -6.8044 -5.0956 14 6 1.6944 -8.1967 -5.1639 15 1 0.7844 -8.3767 -4.5914 16 6 1.6432 -8.7582 -6.5946 17 6 2.2017 -10.0700 -6.0182 18 1 1.4302 -10.7618 -5.6803 19 6 3.2468 -10.7372 -6.9144 20 8 3.6184 -11.9986 -6.3551 21 6 2.8099 -9.2227 -4.8882 22 6 1.5921 -2.0314 -1.4515 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8901 25 1 1.5614 2.4679 1.2085 26 1 3.5346 1.7702 -0.0321 27 1 2.9866 0.9958 -1.9676 28 1 3.8103 -0.1601 -3.9787 29 1 3.2191 -2.5161 -4.3752 30 1 3.3348 -4.5678 -3.9661 31 1 1.8823 -4.0541 -4.8575 32 1 2.7048 -6.4407 -5.7993 33 1 2.3243 -8.2593 -7.2841 34 1 0.6322 -8.8511 -6.9914 35 1 2.8283 -10.8901 -7.9091 36 1 4.1267 -10.0977 -6.9848 37 1 4.2793 -12.4790 -6.8725 38 1 2.7403 -9.6902 -3.9059 39 1 3.8100 -8.8507 -5.1110 40 1 0.9675 -2.5550 -0.7429 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:35 Heat of formation + Delta-G solvation = -101.413472 kcal Electronic energy + Delta-G solvation = -22589.451223 eV Core-core repulsion = 18951.034409 eV Total energy + Delta-G solvation = -3638.416814 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66012 -41.00914 -39.78461 -38.85637 -37.30479 -37.18007 -34.71658 -32.46809 -31.70772 -29.81631 -28.27160 -26.81146 -26.72706 -23.76436 -23.66914 -22.31592 -21.67331 -20.64737 -19.34372 -18.53156 -18.19506 -17.78912 -17.47370 -17.42927 -17.09035 -16.71610 -16.36607 -16.18132 -15.74845 -15.53418 -15.19193 -15.05614 -14.74716 -14.45033 -14.20109 -14.02886 -13.62026 -13.46939 -13.31184 -12.93509 -12.73425 -12.62505 -12.33802 -12.13089 -12.00075 -11.75523 -11.67864 -11.49526 -11.03218 -10.80450 -10.51826 -10.16638 -9.92413 -9.29577 -4.99151 0.19925 0.38139 1.27645 1.37560 1.48433 1.64990 1.97000 2.57333 2.66923 3.22096 3.41158 3.49012 3.53015 3.65952 3.66772 3.75873 3.84019 3.98628 4.01026 4.06705 4.12278 4.24163 4.34733 4.41910 4.43685 4.48890 4.62123 4.62901 4.68597 4.75042 4.79642 4.97254 4.98145 5.04003 5.21386 5.23816 5.36248 5.44132 5.50085 5.69150 6.26103 6.44753 6.74176 6.89668 7.09156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.088 4.088 3 Si 0.798 3.202 4 C -0.084 4.084 5 C -0.158 4.158 6 C -0.069 4.069 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.325 6.325 10 C 0.039 3.961 11 C 0.511 3.489 12 O -0.577 6.577 13 N -0.696 5.696 14 C 0.115 3.885 15 H 0.089 0.911 16 C -0.116 4.116 17 C -0.114 4.114 18 H 0.084 0.916 19 C 0.085 3.915 20 O -0.602 6.602 21 C -0.144 4.144 22 C -0.152 4.152 23 H 0.396 0.604 24 H 0.100 0.900 25 H -0.302 1.302 26 H -0.279 1.279 27 H 0.150 0.850 28 H 0.165 0.835 29 H 0.162 0.838 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.423 0.577 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 3.849 -11.623 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.196 4.196 3 Si 0.703 3.297 4 C -0.085 4.085 5 C -0.175 4.175 6 C -0.087 4.087 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.239 6.239 10 C -0.039 4.039 11 C 0.297 3.703 12 O -0.456 6.456 13 N -0.350 5.350 14 C 0.010 3.990 15 H 0.108 0.892 16 C -0.154 4.154 17 C -0.133 4.133 18 H 0.103 0.897 19 C 0.008 3.992 20 O -0.410 6.410 21 C -0.183 4.183 22 C -0.171 4.171 23 H 0.246 0.754 24 H 0.117 0.883 25 H -0.230 1.230 26 H -0.206 1.206 27 H 0.167 0.833 28 H 0.182 0.818 29 H 0.180 0.820 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.262 0.738 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.246 0.754 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.867 3.844 -9.480 11.328 hybrid contribution 0.472 -1.159 -0.006 1.252 sum 5.339 2.684 -9.486 11.212 Atomic orbital electron populations 1.86476 1.17416 1.82319 1.50449 1.25456 0.85309 1.11993 0.96862 0.93496 0.77701 0.73992 0.84519 1.20210 0.97900 0.93275 0.97086 1.21228 1.00126 1.00802 0.95349 1.21352 0.97159 0.93477 0.96710 1.21642 1.02354 0.96934 1.01101 1.19207 0.95790 0.82841 0.95346 1.86126 1.71375 1.23391 1.43008 1.22746 1.01886 0.90431 0.88829 1.20683 0.79644 0.88134 0.81836 1.90767 1.39105 1.75662 1.40047 1.45644 1.53200 1.11661 1.24484 1.22530 0.98023 0.79346 0.99056 0.89247 1.23288 1.03364 0.93888 0.94884 1.22325 0.98398 0.95674 0.96874 0.89744 1.22245 0.96868 0.84473 0.95648 1.86458 1.64980 1.34158 1.55448 1.23594 0.99406 0.96405 0.98876 1.20288 1.04035 0.95022 0.97730 0.75446 0.88269 1.23038 1.20571 0.83283 0.81796 0.82049 0.85688 0.85324 0.73795 0.86409 0.89680 0.92065 0.91875 0.75357 0.93151 0.88136 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.09 12.76 -148.98 -1.90 -3.99 16 2 C -0.09 -0.20 2.82 71.24 0.20 0.00 16 3 Si 0.80 -1.55 29.79 68.60 2.04 0.49 16 4 C -0.08 -0.23 5.39 -19.88 -0.11 -0.33 16 5 C -0.16 0.34 8.67 22.28 0.19 0.53 16 6 C -0.07 0.31 10.04 22.26 0.22 0.54 16 7 C -0.20 0.55 9.04 22.37 0.20 0.75 16 8 C 0.11 0.55 6.69 22.51 0.15 0.70 16 9 O -0.33 -2.57 9.67 -73.35 -0.71 -3.28 16 10 C 0.04 -0.10 5.22 71.24 0.37 0.28 16 11 C 0.51 2.01 7.91 87.66 0.69 2.70 16 12 O -0.58 -9.67 16.10 16.00 0.26 -9.42 16 13 N -0.70 2.72 5.36 -439.60 -2.36 0.36 16 14 C 0.12 -0.09 4.25 45.61 0.19 0.10 16 15 H 0.09 0.50 7.47 -2.39 -0.02 0.48 16 16 C -0.12 0.77 7.39 31.12 0.23 1.00 16 17 C -0.11 0.24 4.01 -10.27 -0.04 0.20 16 18 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 19 C 0.09 -0.35 6.88 71.98 0.50 0.15 16 20 O -0.60 -0.40 13.66 -148.98 -2.04 -2.44 16 21 C -0.14 0.05 7.44 31.21 0.23 0.29 16 22 C -0.15 -1.12 9.55 22.37 0.21 -0.91 16 23 H 0.40 -1.98 8.70 -74.06 -0.64 -2.62 16 24 H 0.10 0.46 7.96 -2.38 -0.02 0.44 16 25 H -0.30 -1.77 7.11 99.48 0.71 -1.07 16 26 H -0.28 -0.44 7.11 99.48 0.71 0.27 16 27 H 0.15 -1.02 4.87 -2.91 -0.01 -1.04 16 28 H 0.16 -1.81 8.06 -2.91 -0.02 -1.83 16 29 H 0.16 -1.61 6.30 -2.91 -0.02 -1.63 16 30 H 0.13 -1.13 7.66 -2.39 -0.02 -1.15 16 31 H 0.13 -1.24 7.66 -2.38 -0.02 -1.26 16 32 H 0.42 -5.36 8.73 -92.71 -0.81 -6.17 16 33 H 0.12 -1.42 8.08 -2.39 -0.02 -1.44 16 34 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.06 -0.47 7.84 -2.39 -0.02 -0.49 16 37 H 0.40 -3.17 9.12 -74.06 -0.68 -3.85 16 38 H 0.05 0.24 8.14 -2.38 -0.02 0.23 16 39 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 40 H 0.11 1.24 8.06 -2.91 -0.02 1.22 16 Total: 0.00 -31.00 337.81 -2.45 -33.45 By element: Atomic # 1 Polarization: -20.17 SS G_CDS: -1.00 Total: -21.18 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 3.25 Total: 6.00 kcal Atomic # 7 Polarization: 2.72 SS G_CDS: -2.36 Total: 0.36 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -4.39 Total: -19.12 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.04 Total: 0.49 kcal Total: -31.00 -2.45 -33.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.963 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds