Wall clock time and date at job start Tue Mar 9 2021 13:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86303 * 109.47026 * 2 1 4 4 C 1.50701 * 109.47480 * 240.00245 * 2 1 3 5 5 C 1.34238 * 126.50414 * 105.03578 * 4 2 1 6 6 N 1.36831 * 109.93734 * 179.97438 * 5 4 2 7 7 C 1.46497 * 125.05946 * 180.27049 * 6 5 4 8 8 C 1.50706 * 109.46888 * 264.69854 * 7 6 5 9 9 O 1.21276 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99784 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99735 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.85366 * 23.80328 * 11 10 8 13 13 C 1.53783 * 113.61487 * 155.00006 * 11 10 8 14 14 C 1.53778 * 87.08408 * 139.98166 * 13 11 10 15 15 H 1.09004 * 113.61363 * 89.11669 * 14 13 11 16 16 C 1.53001 * 113.61791 * 219.93434 * 14 13 11 17 17 O 1.42898 * 109.47145 * 184.99786 * 16 14 13 18 18 C 1.53780 * 87.07925 * 334.56687 * 14 13 11 19 19 C 1.37695 * 109.87616 * 0.02562 * 6 5 4 20 20 C 1.39078 * 133.51168 * 180.02562 * 19 6 5 21 21 C 1.37791 * 119.77620 * 179.97438 * 20 19 6 22 22 C 1.38786 * 120.66938 * 0.02562 * 21 20 19 23 23 C 1.36658 * 120.52459 * 0.02562 * 22 21 20 24 24 C 1.39590 * 119.76715 * 359.95804 * 23 22 21 25 25 H 0.96701 * 113.99954 * 60.00079 * 1 2 3 26 26 H 1.09000 * 109.47195 * 119.99811 * 2 1 3 27 27 H 1.48500 * 109.99941 * 298.67847 * 3 2 1 28 28 H 1.48500 * 109.99810 * 59.99573 * 3 2 1 29 29 H 1.07994 * 125.02768 * 359.97438 * 5 4 2 30 30 H 1.09002 * 109.47359 * 24.69466 * 7 6 5 31 31 H 1.08997 * 109.47204 * 144.70083 * 7 6 5 32 32 H 0.96998 * 120.00549 * 0.02562 * 10 8 7 33 33 H 1.08998 * 113.61248 * 254.53181 * 13 11 10 34 34 H 1.08996 * 113.61399 * 25.34584 * 13 11 10 35 35 H 1.08998 * 109.47104 * 305.00058 * 16 14 13 36 36 H 1.09003 * 109.46702 * 64.99467 * 16 14 13 37 37 H 0.96705 * 113.99595 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.61502 * 270.88060 * 18 14 13 39 39 H 1.09004 * 113.61299 * 139.98089 * 18 14 13 40 40 H 1.08001 * 120.11450 * 359.97438 * 20 19 6 41 41 H 1.08001 * 119.66625 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.73668 * 179.97438 * 22 21 20 43 43 H 1.08005 * 120.11915 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.4615 -0.1376 -2.3227 6 7 2.8039 -1.0990 -3.2341 7 6 3.4145 -0.8408 -4.5405 8 6 2.3397 -0.7869 -5.5955 9 8 1.1782 -0.9488 -5.2866 10 7 2.6695 -0.5598 -6.8824 11 6 1.6247 -0.5080 -7.9081 12 1 0.6454 -0.2541 -7.5024 13 6 2.0141 0.3221 -9.1426 14 6 1.3254 -0.7604 -9.9903 15 1 0.2636 -0.5765 -10.1547 16 6 2.0761 -1.0992 -11.2797 17 8 1.3055 -2.0229 -12.0510 18 6 1.6102 -1.7348 -8.8352 19 6 2.4940 -2.3457 -2.7383 20 6 2.6293 -3.6361 -3.2391 21 6 2.2148 -4.7106 -2.4826 22 6 1.6620 -4.5192 -1.2241 23 6 1.5188 -3.2598 -0.7131 24 6 1.9323 -2.1569 -1.4621 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5879 2.4585 -1.2243 28 1 1.5613 2.4679 1.2085 29 1 2.5976 0.9247 -2.4614 30 1 3.9439 0.1116 -4.5122 31 1 4.1167 -1.6400 -4.7777 32 1 3.5986 -0.4315 -7.1297 33 1 1.5206 1.2929 -9.1893 34 1 3.0901 0.3861 -9.3041 35 1 2.2361 -0.1885 -11.8569 36 1 3.0389 -1.5465 -11.0326 37 1 1.7219 -2.2829 -12.8841 38 1 2.5758 -2.2344 -8.9135 39 1 0.7907 -2.4247 -8.6338 40 1 3.0579 -3.7955 -4.2175 41 1 2.3203 -5.7119 -2.8734 42 1 1.3418 -5.3722 -0.6442 43 1 1.0874 -3.1184 0.2669 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12366696_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:10 Heat of formation + Delta-G solvation = -23.615651 kcal Electronic energy + Delta-G solvation = -26175.257916 eV Core-core repulsion = 22381.481050 eV Total energy + Delta-G solvation = -3793.776866 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.54947 -41.18653 -39.66792 -38.16422 -37.72539 -37.24649 -34.72781 -33.99233 -31.48248 -30.25346 -29.46595 -28.31579 -26.75447 -25.85131 -23.97418 -23.39693 -22.49585 -21.71792 -20.81910 -20.56574 -18.69414 -18.47370 -18.19878 -17.82898 -17.45785 -17.02284 -16.41641 -16.39926 -16.34970 -16.10382 -15.66622 -15.47823 -15.22175 -14.88865 -14.72734 -14.62887 -14.30688 -14.10175 -13.71597 -13.51128 -13.46646 -13.11789 -12.74480 -12.73976 -12.57436 -12.39456 -12.35416 -12.01427 -11.76415 -11.74633 -11.50986 -11.14924 -10.82626 -10.55806 -10.46178 -10.13850 -9.16978 -8.64279 -4.89593 0.13210 0.62969 1.34431 1.41143 1.42858 1.61480 1.69745 1.99781 2.20690 2.93803 3.21353 3.41185 3.49564 3.57770 3.64292 3.67803 3.73610 3.77389 3.85047 3.99857 4.03942 4.15251 4.21200 4.29323 4.40106 4.42507 4.49110 4.58122 4.61331 4.67291 4.71079 4.73617 4.77742 4.78275 4.89041 4.97300 5.02970 5.12869 5.22134 5.49864 5.50753 5.65508 5.72796 5.74428 6.18299 6.22430 6.46864 6.53319 6.88361 7.12892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.789 3.211 4 C -0.216 4.216 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.088 3.912 8 C 0.489 3.511 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.118 3.882 12 H 0.085 0.915 13 C -0.117 4.117 14 C -0.114 4.114 15 H 0.081 0.919 16 C 0.085 3.915 17 O -0.602 6.602 18 C -0.143 4.143 19 C 0.091 3.909 20 C -0.134 4.134 21 C -0.108 4.108 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.116 4.116 25 H 0.381 0.619 26 H 0.110 0.890 27 H -0.273 1.273 28 H -0.304 1.304 29 H 0.198 0.802 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.423 0.577 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 3.207 -6.322 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.692 3.308 4 C -0.223 4.223 5 C -0.051 4.051 6 N -0.149 5.149 7 C -0.036 4.036 8 C 0.275 3.725 9 O -0.456 6.456 10 N -0.352 5.352 11 C 0.013 3.987 12 H 0.104 0.896 13 C -0.154 4.154 14 C -0.134 4.134 15 H 0.100 0.900 16 C 0.008 3.992 17 O -0.410 6.410 18 C -0.182 4.182 19 C -0.014 4.014 20 C -0.155 4.155 21 C -0.127 4.127 22 C -0.173 4.173 23 C -0.107 4.107 24 C -0.121 4.121 25 H 0.229 0.771 26 H 0.128 0.872 27 H -0.200 1.200 28 H -0.232 1.232 29 H 0.215 0.785 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.261 0.739 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.119 0.881 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.556 3.755 -5.359 11.582 hybrid contribution -1.060 -0.529 -1.014 1.559 sum 8.497 3.226 -6.374 11.101 Atomic orbital electron populations 1.86552 1.19586 1.80594 1.49639 1.24746 0.82501 1.12182 0.97096 0.94177 0.89526 0.70337 0.76754 1.20712 1.10938 0.91844 0.98807 1.22027 0.99545 0.95106 0.88435 1.43437 1.53141 1.03805 1.14488 1.22022 0.93613 1.09388 0.78615 1.21600 0.90465 0.75730 0.84704 1.90800 1.22509 1.50215 1.82066 1.45787 1.11594 1.72013 1.05797 1.22389 0.92395 0.97491 0.86450 0.89644 1.23278 1.02996 0.97513 0.91662 1.22330 1.00577 0.97344 0.93099 0.90025 1.22247 0.93407 0.92341 0.91250 1.86460 1.50774 1.65651 1.38162 1.23521 1.02535 0.96808 0.95292 1.18393 1.01739 0.87001 0.94249 1.20242 1.05091 0.89183 1.00963 1.21129 0.98199 0.99019 0.94324 1.20919 1.02302 0.97067 0.97000 1.20458 0.98945 0.91694 0.99578 1.19357 1.03804 0.93871 0.95033 0.77060 0.87224 1.19967 1.23203 0.78539 0.81512 0.83656 0.73861 0.89893 0.86407 0.92147 0.91841 0.75347 0.88143 0.93473 0.85029 0.83742 0.84576 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.04 12.88 -148.98 -1.92 -6.96 16 2 C -0.06 -0.25 3.06 71.24 0.22 -0.04 16 3 Si 0.79 -0.77 30.82 68.60 2.11 1.35 16 4 C -0.22 -1.31 5.58 -18.62 -0.10 -1.42 16 5 C 0.07 0.12 9.89 83.00 0.82 0.94 16 6 N -0.47 -0.93 2.27 -520.00 -1.18 -2.11 16 7 C 0.09 -0.63 6.48 85.64 0.56 -0.08 16 8 C 0.49 -0.12 7.90 87.66 0.69 0.57 16 9 O -0.58 -7.23 16.02 -3.02 -0.05 -7.28 16 10 N -0.70 4.59 5.35 -440.03 -2.36 2.24 16 11 C 0.12 -0.27 4.24 45.52 0.19 -0.08 16 12 H 0.09 0.39 7.46 -2.39 -0.02 0.37 16 13 C -0.12 0.88 7.39 31.12 0.23 1.11 16 14 C -0.11 0.30 4.01 -10.27 -0.04 0.26 16 15 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 16 C 0.08 -0.38 6.89 71.98 0.50 0.11 16 17 O -0.60 -0.21 13.66 -148.98 -2.04 -2.25 16 18 C -0.14 0.18 7.43 31.12 0.23 0.41 16 19 C 0.09 0.71 6.80 39.03 0.27 0.97 16 20 C -0.13 -0.80 10.00 22.37 0.22 -0.57 16 21 C -0.11 -0.60 10.01 22.30 0.22 -0.38 16 22 C -0.15 -1.12 9.97 22.03 0.22 -0.90 16 23 C -0.09 -0.89 10.05 22.23 0.22 -0.67 16 24 C -0.12 -1.21 6.35 -20.20 -0.13 -1.34 16 25 H 0.38 1.60 8.70 -74.06 -0.64 0.95 16 26 H 0.11 0.45 7.96 -2.39 -0.02 0.43 16 27 H -0.27 -0.28 7.00 99.48 0.70 0.41 16 28 H -0.30 -2.09 7.11 99.48 0.71 -1.38 16 29 H 0.20 -1.06 6.27 -2.91 -0.02 -1.07 16 30 H 0.17 -2.67 8.12 -2.39 -0.02 -2.69 16 31 H 0.15 -1.81 8.14 -2.39 -0.02 -1.83 16 32 H 0.42 -6.32 8.73 -92.71 -0.81 -7.13 16 33 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.12 -1.52 8.08 -2.39 -0.02 -1.54 16 35 H 0.06 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.06 -0.50 7.85 -2.39 -0.02 -0.52 16 37 H 0.40 -3.29 9.12 -74.05 -0.68 -3.97 16 38 H 0.10 -0.44 7.90 -2.39 -0.02 -0.46 16 39 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 42 H 0.14 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -31.52 364.28 -2.15 -33.67 By element: Atomic # 1 Polarization: -16.52 SS G_CDS: -1.05 Total: -17.57 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 4.32 Total: -1.09 kcal Atomic # 7 Polarization: 3.66 SS G_CDS: -3.54 Total: 0.13 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -4.00 Total: -16.49 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.11 Total: 1.35 kcal Total: -31.52 -2.15 -33.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12366696_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.058 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds