Wall clock time and date at job start Tue Mar 9 2021 13:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47322 * 2 1 4 4 C 1.50699 * 109.46699 * 119.99868 * 2 1 3 5 5 C 1.34238 * 126.49866 * 255.02140 * 4 2 1 6 6 N 1.36842 * 109.93808 * 179.97438 * 5 4 2 7 7 C 1.46497 * 125.06274 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47115 * 265.02689 * 7 6 5 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.08998 * 112.85495 * 25.32884 * 11 10 8 13 13 C 1.53787 * 113.61479 * 156.52932 * 11 10 8 14 14 C 1.53784 * 87.08067 * 89.11450 * 13 11 10 15 15 H 1.09005 * 113.60905 * 270.88268 * 14 13 11 16 16 S 1.81397 * 113.61525 * 140.06697 * 14 13 11 17 17 C 1.76194 * 103.00228 * 174.99623 * 16 14 13 18 18 C 1.38976 * 120.07851 * 359.72767 * 17 16 14 19 19 C 1.38083 * 119.91968 * 179.71522 * 18 17 16 20 20 C 1.38308 * 120.07657 * 0.58158 * 19 18 17 21 21 C 1.38297 * 120.16023 * 359.67503 * 20 19 18 22 22 C 1.38078 * 120.08230 * 0.04227 * 21 20 19 23 23 C 1.53782 * 113.61314 * 254.13138 * 11 10 8 24 24 C 1.37691 * 109.87212 * 0.23184 * 6 5 4 25 25 C 1.39089 * 133.50881 * 180.39539 * 24 6 5 26 26 C 1.37783 * 119.77645 * 179.64676 * 25 24 6 27 27 C 1.38789 * 120.67005 * 359.75601 * 26 25 24 28 28 C 1.36661 * 120.52465 * 359.97438 * 27 26 25 29 29 C 1.39584 * 119.76678 * 359.97438 * 28 27 26 30 30 H 0.96696 * 113.99704 * 300.00655 * 1 2 3 31 31 H 1.08992 * 109.47222 * 239.99678 * 2 1 3 32 32 H 1.48504 * 110.00155 * 299.99921 * 3 2 1 33 33 H 1.48498 * 110.00059 * 61.31471 * 3 2 1 34 34 H 1.07994 * 125.03450 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.46734 * 145.02806 * 7 6 5 36 36 H 1.09002 * 109.47081 * 25.02577 * 7 6 5 37 37 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 38 38 H 1.08997 * 113.61123 * 203.66007 * 13 11 10 39 39 H 1.09002 * 113.61306 * 334.48185 * 13 11 10 40 40 H 1.07999 * 120.04128 * 0.02562 * 18 17 16 41 41 H 1.07998 * 119.96266 * 180.27431 * 19 18 17 42 42 H 1.07997 * 119.91252 * 179.69444 * 20 19 18 43 43 H 1.08003 * 119.95738 * 180.02562 * 21 20 19 44 44 H 1.08004 * 120.04199 * 180.02562 * 22 21 20 45 45 H 1.08999 * 113.61160 * 25.43919 * 23 11 10 46 46 H 1.09006 * 113.61519 * 156.33488 * 23 11 10 47 47 H 1.08003 * 120.10720 * 359.40151 * 25 24 6 48 48 H 1.08002 * 119.66210 * 179.72923 * 26 25 24 49 49 H 1.08000 * 119.73747 * 180.02562 * 27 26 25 50 50 H 1.08001 * 120.11135 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4603 -0.1375 2.3232 6 7 2.8019 -1.0989 3.2351 7 6 3.4066 -0.8402 4.5441 8 6 4.9048 -0.9625 4.4384 9 8 5.4171 -1.2390 3.3744 10 7 5.6756 -0.7657 5.5264 11 6 7.1316 -0.8904 5.4249 12 1 7.5030 -0.7065 4.4168 13 6 7.8937 -0.1157 6.5131 14 6 7.7918 -1.3840 7.3767 15 1 6.8888 -1.4260 7.9859 16 16 9.2973 -1.7414 8.3234 17 6 8.8298 -3.1298 9.3023 18 6 7.5452 -3.6507 9.2036 19 6 7.1841 -4.7425 9.9681 20 6 8.0954 -5.3101 10.8400 21 6 9.3730 -4.7910 10.9447 22 6 9.7429 -3.7031 10.1792 23 6 7.6854 -2.1767 6.0602 24 6 2.4978 -2.3459 2.7367 25 6 2.6283 -3.6361 3.2397 26 6 2.2151 -4.7107 2.4827 27 6 1.6644 -4.5194 1.2232 28 6 1.5219 -3.2601 0.7119 29 6 1.9328 -2.1570 1.4620 30 1 -0.3933 0.4418 0.7650 31 1 1.7924 -0.5138 -0.8899 32 1 1.5616 2.4679 -1.2085 33 1 1.5879 2.4585 1.2242 34 1 2.5963 0.9248 2.4620 35 1 3.0329 -1.5658 5.2666 36 1 3.1464 0.1662 4.8721 37 1 5.2657 -0.5456 6.3776 38 1 8.9153 0.1404 6.2323 39 1 7.3394 0.7330 6.9140 40 1 6.8317 -3.2053 8.5262 41 1 6.1874 -5.1507 9.8887 42 1 7.8087 -6.1609 11.4402 43 1 10.0822 -5.2371 11.6263 44 1 10.7410 -3.2985 10.2612 45 1 6.9627 -2.9918 6.0968 46 1 8.6503 -2.4831 5.6559 47 1 3.0556 -3.7952 4.2187 48 1 2.3213 -5.7120 2.8733 49 1 1.3453 -5.3725 0.6429 50 1 1.0922 -3.1189 -0.2689 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:51 Heat of formation + Delta-G solvation = 70.177518 kcal Electronic energy + Delta-G solvation = -33040.344618 eV Core-core repulsion = 28706.263427 eV Total energy + Delta-G solvation = -4334.081191 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.134 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.54899 -41.18598 -39.85861 -39.30154 -38.14927 -37.66494 -34.56291 -33.92845 -32.07057 -31.90722 -31.43228 -30.24500 -29.07759 -26.90925 -26.64948 -25.55934 -23.83318 -23.69250 -23.44827 -22.79663 -21.87677 -20.76536 -20.61628 -18.80659 -18.70950 -18.53171 -17.76350 -17.63209 -17.31173 -16.76974 -16.51888 -16.40550 -16.23930 -16.09718 -15.86985 -15.74718 -15.48431 -15.23945 -14.87293 -14.81709 -14.72319 -14.44706 -14.35742 -14.20063 -14.07108 -13.85761 -13.63055 -13.57372 -13.22894 -13.12751 -12.72583 -12.57768 -12.40053 -12.25798 -12.10051 -12.00524 -11.87691 -11.73674 -11.68092 -11.18765 -11.06407 -10.75037 -10.55764 -10.45101 -10.19529 -9.98562 -9.16392 -8.63917 -8.40670 -4.86226 0.13803 0.21265 0.36858 0.53427 0.63397 1.35216 1.36924 1.40488 1.44748 1.58175 1.67680 1.97747 2.14898 2.72516 2.94565 3.24509 3.29580 3.53231 3.56109 3.63837 3.68992 3.74065 3.78680 3.84308 3.90658 3.99537 4.03178 4.14183 4.20241 4.21477 4.29386 4.42971 4.46244 4.49880 4.52268 4.58656 4.63818 4.66593 4.71568 4.75901 4.77053 4.78763 4.86277 4.89163 4.95036 5.01907 5.13463 5.25745 5.41201 5.44885 5.50443 5.53573 5.66043 5.72975 5.74819 5.93459 6.18020 6.22716 6.44854 6.60484 7.12244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.051 4.051 3 Si 0.765 3.235 4 C -0.215 4.215 5 C 0.075 3.925 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.497 3.503 9 O -0.563 6.563 10 N -0.695 5.695 11 C 0.129 3.871 12 H 0.093 0.907 13 C -0.103 4.103 14 C -0.094 4.094 15 H 0.127 0.873 16 S -0.135 6.135 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.136 4.136 24 C 0.092 3.908 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.154 4.154 28 C -0.088 4.088 29 C -0.116 4.116 30 H 0.384 0.616 31 H 0.103 0.897 32 H -0.303 1.303 33 H -0.258 1.258 34 H 0.198 0.802 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.420 0.580 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.127 0.873 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.133 0.867 48 H 0.145 0.855 49 H 0.135 0.865 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 2.348 7.774 8.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.160 4.160 3 Si 0.668 3.332 4 C -0.223 4.223 5 C -0.050 4.050 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.282 3.718 9 O -0.440 6.440 10 N -0.349 5.349 11 C 0.021 3.979 12 H 0.111 0.889 13 C -0.142 4.142 14 C -0.222 4.222 15 H 0.145 0.855 16 S 0.112 5.888 17 C -0.209 4.209 18 C -0.163 4.163 19 C -0.128 4.128 20 C -0.154 4.154 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.177 4.177 24 C -0.013 4.013 25 C -0.154 4.154 26 C -0.127 4.127 27 C -0.173 4.173 28 C -0.107 4.107 29 C -0.120 4.120 30 H 0.233 0.767 31 H 0.121 0.879 32 H -0.231 1.231 33 H -0.184 1.184 34 H 0.215 0.785 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.258 0.742 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.145 0.855 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.151 0.849 48 H 0.162 0.838 49 H 0.153 0.847 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.755 3.446 6.687 7.725 hybrid contribution -2.122 -1.187 0.751 2.545 sum -0.367 2.259 7.438 7.782 Atomic orbital electron populations 1.86564 1.19100 1.80594 1.49866 1.24585 0.82801 1.11652 0.96917 0.94053 0.90404 0.71082 0.77642 1.20707 1.11320 0.91876 0.98374 1.22017 0.99195 0.95194 0.88617 1.43426 1.52073 1.03769 1.15546 1.21981 0.88701 1.09041 0.84001 1.21387 0.90398 0.76151 0.83844 1.90821 1.75530 1.47802 1.29836 1.45470 1.05713 1.71226 1.12472 1.21646 0.80256 0.96073 0.99880 0.88883 1.23123 1.02409 0.95523 0.93185 1.25195 0.98229 1.01759 0.97065 0.85520 1.85662 1.21950 1.34156 1.47048 1.21907 0.97618 1.00305 1.01112 1.21381 0.94872 0.98363 1.01681 1.21416 1.00633 0.95341 0.95427 1.21547 0.93729 1.00892 0.99274 1.21405 0.97255 0.95492 0.98752 1.21002 0.99329 0.97410 0.96798 1.23765 1.02565 0.97519 0.93857 1.18385 1.01533 0.87000 0.94390 1.20234 1.04658 0.89082 1.01381 1.21126 0.98182 0.99029 0.94339 1.20915 1.02372 0.97028 0.96996 1.20449 0.99098 0.91724 0.99410 1.19337 1.03950 0.93789 0.94909 0.76745 0.87921 1.23074 1.18358 0.78538 0.83929 0.81916 0.74172 0.87765 0.87397 0.84563 0.83788 0.83983 0.83959 0.85477 0.90664 0.88717 0.84900 0.83774 0.84681 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.50 12.88 -148.98 -1.92 -5.42 16 2 C -0.05 -0.19 3.06 71.24 0.22 0.02 16 3 Si 0.77 -0.59 30.82 68.60 2.11 1.53 16 4 C -0.22 -1.08 5.57 -18.62 -0.10 -1.19 16 5 C 0.08 0.02 9.89 83.00 0.82 0.84 16 6 N -0.47 -0.15 2.27 -520.00 -1.18 -1.33 16 7 C 0.09 -0.78 6.48 85.63 0.55 -0.23 16 8 C 0.50 -1.84 7.90 87.65 0.69 -1.14 16 9 O -0.56 -4.46 16.03 -3.04 -0.05 -4.51 16 10 N -0.70 6.74 5.26 -440.04 -2.32 4.43 16 11 C 0.13 -0.79 4.30 45.52 0.20 -0.59 16 12 H 0.09 -0.09 7.50 -2.39 -0.02 -0.11 16 13 C -0.10 0.90 7.41 31.12 0.23 1.13 16 14 C -0.09 0.61 2.90 31.21 0.09 0.70 16 15 H 0.13 -1.22 6.85 -2.38 -0.02 -1.24 16 16 S -0.13 -0.04 21.73 -56.49 -1.23 -1.27 16 17 C -0.10 -0.23 6.11 22.62 0.14 -0.09 16 18 C -0.14 0.05 9.32 22.41 0.21 0.26 16 19 C -0.11 0.14 10.04 22.25 0.22 0.36 16 20 C -0.13 0.10 10.04 22.30 0.22 0.32 16 21 C -0.11 -0.06 10.04 22.25 0.22 0.17 16 22 C -0.12 -0.33 9.79 22.41 0.22 -0.11 16 23 C -0.14 0.63 7.40 31.21 0.23 0.86 16 24 C 0.09 0.57 6.80 39.03 0.27 0.84 16 25 C -0.13 -0.57 10.00 22.37 0.22 -0.35 16 26 C -0.11 -0.47 10.01 22.29 0.22 -0.25 16 27 C -0.15 -0.97 9.97 22.03 0.22 -0.75 16 28 C -0.09 -0.81 10.05 22.23 0.22 -0.58 16 29 C -0.12 -1.06 6.35 -20.20 -0.13 -1.19 16 30 H 0.38 -0.16 8.70 -74.06 -0.64 -0.80 16 31 H 0.10 0.51 7.96 -2.39 -0.02 0.49 16 32 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 33 H -0.26 0.27 7.00 99.48 0.70 0.97 16 34 H 0.20 -1.31 6.27 -2.91 -0.02 -1.33 16 35 H 0.14 -1.97 8.14 -2.39 -0.02 -1.99 16 36 H 0.16 -2.77 8.12 -2.39 -0.02 -2.79 16 37 H 0.42 -7.06 8.70 -92.71 -0.81 -7.86 16 38 H 0.10 -0.76 8.10 -2.39 -0.02 -0.78 16 39 H 0.11 -1.31 8.14 -2.39 -0.02 -1.33 16 40 H 0.14 -0.63 5.64 -2.91 -0.02 -0.64 16 41 H 0.14 -0.83 8.06 -2.91 -0.02 -0.86 16 42 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 43 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 44 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 45 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.09 -0.18 8.11 -2.38 -0.02 -0.20 16 47 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 48 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 49 H 0.14 0.32 8.06 -2.91 -0.02 0.30 16 50 H 0.12 0.99 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -27.96 431.37 0.18 -27.79 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -0.44 Total: -20.25 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 5.19 Total: -0.97 kcal Atomic # 7 Polarization: 6.60 SS G_CDS: -3.50 Total: 3.10 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.97 Total: -9.92 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.11 Total: 1.53 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.23 Total: -1.27 kcal Total: -27.96 0.18 -27.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.964 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds