Wall clock time and date at job start Tue Mar 9 2021 13:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35659 * 117.00016 * 2 1 4 4 C 1.38401 * 120.12122 * 359.97438 * 3 2 1 5 5 C 1.38725 * 120.03019 * 180.02562 * 4 3 2 6 6 O 1.35718 * 119.86008 * 179.97438 * 5 4 3 7 7 C 1.42900 * 117.00201 * 0.02562 * 6 5 4 8 8 C 1.39137 * 120.27415 * 0.02562 * 5 4 3 9 9 C 1.50700 * 119.87919 * 179.97438 * 8 5 4 10 10 O 1.42904 * 109.47136 * 284.99966 * 9 8 5 11 11 Si 1.86303 * 109.47411 * 165.00010 * 9 8 5 12 12 C 1.37583 * 120.24149 * 359.74206 * 8 5 4 13 13 C 1.39816 * 119.96305 * 0.51100 * 12 8 5 14 14 C 1.47306 * 120.13576 * 179.77081 * 13 12 8 15 15 O 1.21620 * 119.99854 * 179.72632 * 14 13 12 16 16 N 1.34771 * 119.99767 * 359.71868 * 14 13 12 17 17 C 1.46499 * 119.99903 * 180.02562 * 16 14 13 18 18 H 1.09000 * 112.84849 * 336.19231 * 17 16 14 19 19 C 1.53779 * 113.61746 * 107.50534 * 17 16 14 20 20 C 1.53779 * 87.08402 * 89.11614 * 19 17 16 21 21 H 1.09002 * 113.61557 * 270.88569 * 20 19 17 22 22 S 1.81397 * 113.61535 * 139.98341 * 20 19 17 23 23 O 1.42099 * 110.54450 * 194.12938 * 22 20 19 24 24 O 1.42100 * 110.54181 * 330.87542 * 22 20 19 25 25 C 1.76194 * 104.45028 * 82.50359 * 22 20 19 26 26 C 1.38239 * 119.99789 * 269.72742 * 25 22 20 27 27 C 1.38235 * 119.99666 * 179.74704 * 26 25 22 28 28 C 1.38236 * 119.99956 * 0.54645 * 27 26 25 29 29 C 1.38229 * 120.00364 * 359.70663 * 28 27 26 30 30 C 1.38231 * 120.00522 * 90.00054 * 25 22 20 31 31 C 1.53784 * 87.08045 * 25.43458 * 20 19 17 32 32 H 1.08999 * 109.47389 * 59.99627 * 1 2 3 33 33 H 1.08998 * 109.47626 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.47125 * 300.00105 * 1 2 3 35 35 H 1.08003 * 119.98097 * 0.02562 * 4 3 2 36 36 H 1.08999 * 109.47211 * 59.99592 * 7 6 5 37 37 H 1.08998 * 109.47071 * 179.97438 * 7 6 5 38 38 H 1.09005 * 109.46727 * 299.99708 * 7 6 5 39 39 H 1.09005 * 109.47235 * 45.00185 * 9 8 5 40 40 H 0.96698 * 113.99558 * 299.99746 * 10 9 8 41 41 H 1.48498 * 110.00369 * 180.02562 * 11 9 8 42 42 H 1.48508 * 109.99754 * 301.31857 * 11 9 8 43 43 H 1.08004 * 120.01821 * 180.25680 * 12 8 5 44 44 H 0.97001 * 120.00748 * 0.02562 * 16 14 13 45 45 H 1.09006 * 113.61280 * 203.66438 * 19 17 16 46 46 H 1.08999 * 113.61062 * 334.48192 * 19 17 16 47 47 H 1.08001 * 120.00083 * 359.97438 * 26 25 22 48 48 H 1.08002 * 119.99950 * 180.27331 * 27 26 25 49 49 H 1.08009 * 119.99701 * 179.72389 * 28 27 26 50 50 H 1.07996 * 120.00310 * 179.97438 * 29 28 27 51 51 H 1.08002 * 119.99510 * 0.02562 * 30 25 22 52 52 H 1.09004 * 113.61451 * 220.02152 * 31 20 19 53 53 H 1.08994 * 113.61477 * 89.11454 * 31 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2935 2.3711 -0.0005 5 6 1.9253 3.6061 -0.0011 6 8 1.1851 4.7437 -0.0021 7 6 -0.2359 4.5932 -0.0021 8 6 3.3145 3.6833 -0.0016 9 6 3.9915 5.0297 -0.0028 10 8 3.8936 5.6110 -1.3045 11 14 5.7865 4.8227 0.4513 12 6 4.0724 2.5351 0.0037 13 6 3.4461 1.2850 -0.0011 14 6 4.2538 0.0532 -0.0005 15 8 3.7065 -1.0329 0.0004 16 7 5.5994 0.1297 -0.0010 17 6 6.4027 -1.0954 -0.0010 18 1 5.8664 -1.9531 0.4049 19 6 7.0944 -1.3785 -1.3449 20 6 8.2746 -0.5412 -0.8244 21 1 8.1886 0.5218 -1.0496 22 16 9.8978 -1.2256 -1.2570 23 8 10.9208 -0.6063 -0.4894 24 8 9.8267 -2.6397 -1.3775 25 6 10.1879 -0.6633 -2.9015 26 6 9.7773 -1.4294 -3.9764 27 6 10.0003 -0.9858 -5.2665 28 6 10.6439 0.2185 -5.4818 29 6 11.0591 0.9821 -4.4069 30 6 10.8311 0.5412 -3.1168 31 6 7.8087 -0.9101 0.5940 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 0.2149 2.3165 -0.0005 36 1 -0.5431 4.0447 0.8884 37 1 -0.7055 5.5768 -0.0025 38 1 -0.5430 4.0431 -0.8916 39 1 3.5058 5.6813 0.7237 40 1 4.3056 5.0839 -2.0027 41 1 6.4653 6.1434 0.4543 42 1 5.9020 4.1898 1.7898 43 1 5.1505 2.5993 0.0075 44 1 6.0360 0.9959 -0.0014 45 1 7.3386 -2.4299 -1.4973 46 1 6.5855 -0.9339 -2.2001 47 1 9.2791 -2.3728 -3.8082 48 1 9.6756 -1.5822 -6.1063 49 1 10.8220 0.5630 -6.4898 50 1 11.5623 1.9228 -4.5751 51 1 11.1562 1.1374 -2.2770 52 1 7.8771 -0.0861 1.3042 53 1 8.2481 -1.8334 0.9716 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12297780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:31 Heat of formation + Delta-G solvation = -110.637502 kcal Electronic energy + Delta-G solvation = -40900.279170 eV Core-core repulsion = 35605.506675 eV Total energy + Delta-G solvation = -5294.772495 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 434.137 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.13525 -41.04829 -40.09949 -39.98202 -39.11974 -38.42703 -38.14680 -37.00602 -36.97644 -34.40048 -32.25381 -32.23931 -31.94195 -31.65892 -28.99681 -28.27113 -26.97580 -26.85703 -26.10097 -24.62022 -24.06969 -23.65415 -22.87192 -21.72231 -20.99938 -20.03853 -19.81358 -19.15979 -18.78320 -18.15993 -18.00558 -17.78459 -17.23420 -17.00240 -16.92640 -16.88654 -16.61907 -16.44663 -16.29316 -15.83907 -15.79929 -15.77797 -15.62571 -15.46639 -15.40962 -15.13041 -14.59606 -14.43601 -14.24216 -14.18751 -13.99385 -13.89992 -13.80725 -13.66492 -13.46979 -13.23239 -13.18022 -13.16457 -13.05248 -12.67658 -12.54774 -12.52588 -12.26309 -12.16241 -12.04749 -11.98257 -11.91489 -11.68633 -11.65234 -11.15327 -10.93337 -10.38352 -10.30558 -10.14418 -9.98589 -9.92341 -9.19872 -5.07300 -0.92546 -0.26755 -0.11822 0.07990 0.35505 1.30471 1.64612 1.73777 1.85104 2.01472 2.04242 2.11346 2.17545 2.49402 2.59799 2.79700 2.97666 3.16162 3.43260 3.45631 3.52316 3.59349 3.67644 3.73766 3.83999 3.89527 3.96182 4.01212 4.11087 4.15507 4.16747 4.22813 4.25634 4.26787 4.28513 4.44067 4.47275 4.49114 4.55910 4.57319 4.62702 4.64640 4.66183 4.74668 4.76758 4.79375 4.89418 4.93695 5.00165 5.01378 5.03218 5.14223 5.29519 5.32893 5.45222 5.51723 5.91815 6.02486 6.28047 6.54629 6.84986 7.25891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.302 6.302 3 C 0.218 3.782 4 C -0.312 4.312 5 C 0.212 3.788 6 O -0.315 6.315 7 C 0.013 3.987 8 C -0.204 4.204 9 C -0.063 4.063 10 O -0.554 6.554 11 Si 0.773 3.227 12 C 0.010 3.990 13 C -0.225 4.225 14 C 0.569 3.431 15 O -0.559 6.559 16 N -0.700 5.700 17 C 0.132 3.868 18 H 0.101 0.899 19 C -0.126 4.126 20 C -0.575 4.575 21 H 0.196 0.804 22 S 2.498 3.502 23 O -0.971 6.971 24 O -0.969 6.969 25 C -0.665 4.665 26 C -0.040 4.040 27 C -0.149 4.149 28 C -0.071 4.071 29 C -0.146 4.146 30 C -0.040 4.040 31 C -0.121 4.121 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.393 0.607 41 H -0.296 1.296 42 H -0.271 1.271 43 H 0.171 0.829 44 H 0.415 0.585 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.144 0.856 48 H 0.149 0.851 49 H 0.152 0.848 50 H 0.154 0.846 51 H 0.151 0.849 52 H 0.122 0.878 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 4.553 -3.750 6.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.213 6.213 3 C 0.168 3.832 4 C -0.332 4.332 5 C 0.164 3.836 6 O -0.226 6.226 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.171 4.171 10 O -0.362 6.362 11 Si 0.677 3.323 12 C -0.008 4.008 13 C -0.229 4.229 14 C 0.358 3.642 15 O -0.438 6.438 16 N -0.354 5.354 17 C 0.024 3.976 18 H 0.119 0.881 19 C -0.165 4.165 20 C -0.688 4.688 21 H 0.213 0.787 22 S 2.684 3.316 23 O -0.969 6.969 24 O -0.966 6.966 25 C -0.752 4.752 26 C -0.059 4.059 27 C -0.168 4.168 28 C -0.089 4.089 29 C -0.164 4.164 30 C -0.059 4.059 31 C -0.161 4.161 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.242 0.758 41 H -0.224 1.224 42 H -0.197 1.197 43 H 0.188 0.812 44 H 0.253 0.747 45 H 0.130 0.870 46 H 0.122 0.878 47 H 0.162 0.838 48 H 0.166 0.834 49 H 0.170 0.830 50 H 0.171 0.829 51 H 0.169 0.831 52 H 0.140 0.860 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.941 3.914 -2.376 5.442 hybrid contribution -1.400 0.915 -0.398 1.719 sum -4.341 4.829 -2.774 7.061 Atomic orbital electron populations 1.23461 0.76601 1.05754 1.02555 1.86363 1.23105 1.25837 1.85994 1.18993 0.91229 0.84611 0.88328 1.21415 1.01995 0.90840 1.18901 1.18978 0.91073 0.84872 0.88702 1.86144 1.21061 1.28887 1.86532 1.23453 0.76320 1.05776 1.02603 1.19611 0.90838 0.96833 1.13249 1.25087 1.11416 0.91658 0.88978 1.86517 1.82673 1.50209 1.16754 0.94449 0.73362 0.81678 0.82850 1.20875 0.99799 0.88615 0.91534 1.19110 0.90637 0.93835 1.19302 1.17961 0.82373 0.88258 0.75583 1.90842 1.72275 1.30199 1.50441 1.45364 1.04810 1.09733 1.75451 1.21619 0.90865 0.88597 0.96484 0.88131 1.23302 0.92808 1.00821 0.99604 1.31709 1.15416 1.14406 1.07276 0.78654 1.05205 0.77724 0.74515 0.74168 1.93532 1.55264 1.78181 1.69883 1.93536 1.87634 1.29269 1.86193 1.30425 1.15720 1.06977 1.22108 1.21182 0.94335 0.97983 0.92417 1.21650 1.00196 0.97532 0.97420 1.21899 0.92862 0.93402 1.00717 1.21672 1.00892 1.01621 0.92257 1.21242 0.92310 0.92996 0.99319 1.23240 0.94529 1.05411 0.92889 0.91046 0.86863 0.91235 0.82176 0.91293 0.86429 0.91199 0.88568 0.75769 1.22419 1.19678 0.81240 0.74656 0.86986 0.87755 0.83795 0.83355 0.82997 0.82868 0.83094 0.85960 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.30 -1.92 8.56 -68.78 -0.59 -2.51 16 3 C 0.22 0.85 6.70 22.82 0.15 1.01 16 4 C -0.31 -0.11 8.01 22.43 0.18 0.07 16 5 C 0.21 0.29 6.67 22.60 0.15 0.44 16 6 O -0.31 -0.58 9.80 -90.40 -0.89 -1.47 16 7 C 0.01 -0.07 9.80 113.37 1.11 1.04 16 8 C -0.20 0.22 5.27 -19.80 -0.10 0.12 16 9 C -0.06 0.09 2.37 71.24 0.17 0.26 16 10 O -0.55 0.30 12.88 -148.98 -1.92 -1.62 16 11 Si 0.77 -4.53 29.90 68.60 2.05 -2.48 16 12 C 0.01 -0.04 8.14 22.50 0.18 0.14 16 13 C -0.22 -0.40 5.89 -20.00 -0.12 -0.52 16 14 C 0.57 2.14 7.76 86.63 0.67 2.81 16 15 O -0.56 -7.12 14.75 16.87 0.25 -6.87 16 16 N -0.70 3.19 5.21 -443.41 -2.31 0.88 16 17 C 0.13 -0.53 4.32 45.52 0.20 -0.33 16 18 H 0.10 0.03 7.46 -2.39 -0.02 0.02 16 19 C -0.13 0.74 7.44 31.12 0.23 0.97 16 20 C -0.58 4.70 4.19 31.12 0.13 4.83 16 21 H 0.20 -3.16 8.14 -2.39 -0.02 -3.18 16 22 S 2.50 1.70 5.13 -56.49 -0.29 1.41 16 23 O -0.97 -6.88 17.13 -127.65 -2.19 -9.06 16 24 O -0.97 -7.20 16.30 -127.65 -2.08 -9.28 16 25 C -0.66 -0.20 5.66 22.27 0.13 -0.07 16 26 C -0.04 0.00 9.47 22.27 0.21 0.21 16 27 C -0.15 0.33 10.05 22.27 0.22 0.55 16 28 C -0.07 0.26 10.05 22.27 0.22 0.49 16 29 C -0.15 0.49 10.05 22.27 0.22 0.71 16 30 C -0.04 0.05 9.47 22.27 0.21 0.26 16 31 C -0.12 0.92 7.42 31.12 0.23 1.15 16 32 H 0.07 -0.40 7.66 -2.39 -0.02 -0.42 16 33 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.07 -0.37 7.66 -2.38 -0.02 -0.39 16 35 H 0.16 -0.66 4.50 -2.91 -0.01 -0.68 16 36 H 0.07 -0.51 7.65 -2.39 -0.02 -0.53 16 37 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 38 H 0.07 -0.51 7.65 -2.38 -0.02 -0.53 16 39 H 0.10 0.18 7.82 -2.38 -0.02 0.16 16 40 H 0.39 -3.74 8.70 -74.06 -0.64 -4.39 16 41 H -0.30 -0.68 7.11 99.48 0.71 0.03 16 42 H -0.27 0.61 7.11 99.48 0.71 1.32 16 43 H 0.17 -2.07 3.43 -2.91 -0.01 -2.08 16 44 H 0.41 -5.01 6.72 -92.71 -0.62 -5.63 16 45 H 0.11 -0.52 7.43 -2.38 -0.02 -0.54 16 46 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.14 -0.23 7.56 -2.91 -0.02 -0.25 16 48 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 49 H 0.15 -1.30 8.06 -2.91 -0.02 -1.33 16 50 H 0.15 -1.24 8.06 -2.91 -0.02 -1.26 16 51 H 0.15 -0.62 7.57 -2.91 -0.02 -0.65 16 52 H 0.12 -1.42 8.14 -2.39 -0.02 -1.44 16 53 H 0.11 -0.82 8.10 -2.39 -0.02 -0.84 16 Total: 0.00 -38.88 447.16 -2.68 -41.56 By element: Atomic # 1 Polarization: -25.56 SS G_CDS: -0.23 Total: -25.80 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.52 Total: 15.23 kcal Atomic # 7 Polarization: 3.19 SS G_CDS: -2.31 Total: 0.88 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -7.41 Total: -30.81 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.05 Total: -2.48 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -0.29 Total: 1.41 kcal Total: -38.88 -2.68 -41.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12297780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.081 kcal (2) G-P(sol) polarization free energy of solvation -38.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds