Wall clock time and date at job start Tue Mar 9 2021 13:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47280 * 2 1 4 4 C 1.50700 * 109.47066 * 120.00550 * 2 1 3 5 5 C 1.38189 * 119.83671 * 255.01851 * 4 2 1 6 6 C 1.38317 * 120.14343 * 179.97438 * 5 4 2 7 7 F 1.35092 * 120.08447 * 180.02562 * 6 5 4 8 8 C 1.39808 * 119.82806 * 359.77459 * 6 5 4 9 9 C 1.47692 * 120.15446 * 180.26945 * 8 6 5 10 10 O 1.21571 * 120.00023 * 0.21238 * 9 8 6 11 11 N 1.34778 * 120.00049 * 180.20578 * 9 8 6 12 12 C 1.46503 * 119.99780 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.84902 * 23.81177 * 12 11 9 14 14 C 1.53789 * 113.61301 * 155.00301 * 12 11 9 15 15 C 1.53784 * 87.08099 * 89.11748 * 14 12 11 16 16 H 1.09004 * 113.61234 * 270.80322 * 15 14 12 17 17 S 1.81391 * 113.61460 * 139.98347 * 15 14 12 18 18 O 1.42100 * 110.54224 * 296.62250 * 17 15 14 19 19 O 1.42099 * 110.54523 * 73.37659 * 17 15 14 20 20 C 1.76207 * 104.45054 * 185.00185 * 17 15 14 21 21 C 1.38234 * 119.99483 * 269.72704 * 20 17 15 22 22 C 1.38241 * 119.99383 * 179.76429 * 21 20 17 23 23 C 1.38230 * 120.00187 * 0.48855 * 22 21 20 24 24 C 1.38236 * 119.99958 * 359.78153 * 23 22 21 25 25 C 1.38232 * 120.00147 * 89.99711 * 20 17 15 26 26 C 1.53780 * 113.61356 * 252.49921 * 12 11 9 27 27 C 1.39657 * 119.69339 * 0.48138 * 8 6 5 28 28 C 1.38072 * 119.84896 * 359.51146 * 27 8 6 29 29 F 1.35101 * 119.91643 * 180.25458 * 28 27 8 30 30 H 0.96698 * 113.99994 * 300.00195 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00075 * 2 1 3 32 32 H 1.48495 * 110.00165 * 300.00219 * 3 2 1 33 33 H 1.48504 * 109.99427 * 61.31977 * 3 2 1 34 34 H 1.07993 * 119.92994 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00067 * 0.02562 * 11 9 8 36 36 H 1.08997 * 113.61513 * 203.66736 * 14 12 11 37 37 H 1.08998 * 113.61043 * 334.56935 * 14 12 11 38 38 H 1.08001 * 120.00412 * 0.02562 * 21 20 17 39 39 H 1.07998 * 119.99798 * 180.25059 * 22 21 20 40 40 H 1.08002 * 119.99727 * 179.76983 * 23 22 21 41 41 H 1.08000 * 119.99908 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00082 * 0.02562 * 25 20 17 43 43 H 1.08996 * 113.61956 * 25.43350 * 26 12 11 44 44 H 1.09003 * 113.61296 * 156.34337 * 26 12 11 45 45 H 1.08002 * 120.07918 * 179.79826 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.4527 0.0197 2.2814 6 6 2.9150 -0.6258 3.4139 7 9 3.4239 0.0893 4.4408 8 6 2.8494 -2.0200 3.4952 9 6 3.3356 -2.7164 4.7035 10 8 3.7905 -2.0769 5.6320 11 7 3.2747 -4.0608 4.7770 12 6 3.7575 -4.7515 5.9754 13 1 3.7496 -4.1170 6.8616 14 6 3.1076 -6.1275 6.1971 15 6 4.2405 -6.7136 5.3381 16 1 4.0129 -6.7373 4.2724 17 16 4.8787 -8.2945 5.9575 18 8 5.4674 -8.1266 7.2398 19 8 3.9481 -9.3394 5.7097 20 6 6.2389 -8.6642 4.9001 21 6 6.0381 -9.4009 3.7478 22 6 7.1044 -9.6868 2.9157 23 6 8.3730 -9.2447 3.2411 24 6 8.5746 -8.5128 4.3963 25 6 7.5075 -8.2224 5.2257 26 6 5.0840 -5.4998 5.7627 27 6 2.3262 -2.7515 2.4268 28 6 1.8682 -2.0937 1.3025 29 9 1.3570 -2.7997 0.2702 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5139 -0.8900 32 1 1.5616 2.4679 -1.2084 33 1 1.5879 2.4584 1.2243 34 1 2.4992 1.0968 2.2183 35 1 2.9120 -4.5710 4.0361 36 1 3.1305 -6.4591 7.2352 37 1 2.1213 -6.2228 5.7430 38 1 5.0475 -9.7495 3.4954 39 1 6.9469 -10.2589 2.0133 40 1 9.2066 -9.4713 2.5929 41 1 9.5659 -8.1677 4.6508 42 1 7.6652 -7.6509 6.1285 43 1 5.6933 -5.0885 4.9580 44 1 5.6473 -5.6598 6.6821 45 1 2.2756 -3.8289 2.4816 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:49 Heat of formation + Delta-G solvation = -124.987595 kcal Electronic energy + Delta-G solvation = -36090.789432 eV Core-core repulsion = 30804.926341 eV Total energy + Delta-G solvation = -5285.863091 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.088 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.11343 -50.09563 -41.67472 -40.37338 -40.04512 -39.29120 -38.22298 -37.76858 -37.07901 -34.83208 -33.06759 -32.31389 -32.00601 -31.38479 -28.22376 -27.04112 -26.71692 -24.41779 -24.24624 -23.87038 -23.71614 -22.14016 -21.16702 -19.92913 -19.82223 -19.08287 -18.82566 -18.57697 -18.16236 -17.84767 -17.33308 -17.05665 -16.99064 -16.95301 -16.82142 -16.57742 -16.25309 -16.02727 -15.89348 -15.87850 -15.64594 -15.53534 -15.42330 -15.08858 -14.62464 -14.50206 -14.26085 -14.15645 -14.03403 -13.87476 -13.79756 -13.76114 -13.25273 -13.24486 -13.19684 -13.12585 -12.98743 -12.42942 -12.22626 -12.14176 -12.02751 -11.93562 -11.76310 -11.34200 -11.21102 -10.79051 -10.62119 -10.37457 -10.28520 -10.05041 -9.83249 -4.96435 -1.00253 -0.82775 -0.31320 -0.18257 0.29045 1.15553 1.35283 1.53757 1.71567 1.79684 1.91525 2.21158 2.42695 2.72991 2.78138 2.83398 2.89604 3.06034 3.09989 3.24167 3.35225 3.42100 3.48854 3.53838 3.76488 3.80937 3.87776 3.94532 4.09687 4.15524 4.31281 4.37616 4.37835 4.40420 4.43710 4.49354 4.52131 4.55031 4.68566 4.69023 4.70551 4.73379 4.82321 4.85892 4.94757 5.07640 5.26758 5.31391 5.38118 5.39054 5.85561 6.25855 6.38448 6.94633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.087 4.087 3 Si 0.772 3.228 4 C -0.090 4.090 5 C -0.131 4.131 6 C 0.141 3.859 7 F -0.124 7.124 8 C -0.147 4.147 9 C 0.563 3.437 10 O -0.554 6.554 11 N -0.690 5.690 12 C 0.130 3.870 13 H 0.106 0.894 14 C -0.120 4.120 15 C -0.577 4.577 16 H 0.189 0.811 17 S 2.500 3.500 18 O -0.966 6.966 19 O -0.973 6.973 20 C -0.666 4.666 21 C -0.042 4.042 22 C -0.147 4.147 23 C -0.071 4.071 24 C -0.148 4.148 25 C -0.040 4.040 26 C -0.125 4.125 27 C -0.076 4.076 28 C 0.104 3.896 29 F -0.128 7.128 30 H 0.390 0.610 31 H 0.133 0.867 32 H -0.296 1.296 33 H -0.271 1.271 34 H 0.170 0.830 35 H 0.418 0.582 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 0.803 -6.255 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.195 4.195 3 Si 0.676 3.324 4 C -0.092 4.092 5 C -0.149 4.149 6 C 0.121 3.879 7 F -0.102 7.102 8 C -0.151 4.151 9 C 0.351 3.649 10 O -0.433 6.433 11 N -0.343 5.343 12 C 0.023 3.977 13 H 0.124 0.876 14 C -0.159 4.159 15 C -0.689 4.689 16 H 0.207 0.793 17 S 2.686 3.314 18 O -0.963 6.963 19 O -0.970 6.970 20 C -0.753 4.753 21 C -0.061 4.061 22 C -0.166 4.166 23 C -0.088 4.088 24 C -0.167 4.167 25 C -0.059 4.059 26 C -0.165 4.165 27 C -0.095 4.095 28 C 0.084 3.916 29 F -0.106 7.106 30 H 0.240 0.760 31 H 0.150 0.850 32 H -0.223 1.223 33 H -0.197 1.197 34 H 0.187 0.813 35 H 0.257 0.743 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.122 0.878 44 H 0.134 0.866 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.056 1.187 -5.432 5.928 hybrid contribution -0.790 -0.253 -0.394 0.918 sum 1.267 0.934 -5.826 6.035 Atomic orbital electron populations 1.86659 1.17493 1.80388 1.50288 1.25295 0.84171 1.12560 0.97487 0.93858 0.90069 0.71188 0.77312 1.20440 0.98775 0.92659 0.97278 1.21104 1.00247 1.02372 0.91209 1.17789 0.96090 0.88475 0.85574 1.91608 1.83895 1.77626 1.57079 1.19771 1.06583 0.92299 0.96462 1.18009 0.78117 0.82785 0.86020 1.90892 1.46244 1.66743 1.39407 1.45360 1.63454 1.05281 1.20199 1.21698 0.94156 0.92917 0.88948 0.87553 1.23241 0.98212 0.93499 1.00934 1.31685 1.08852 1.14793 1.13598 0.79327 1.05154 0.74274 0.77344 0.74653 1.93542 1.77139 1.87294 1.38364 1.93533 1.63300 1.54134 1.86008 1.30432 1.15689 1.14856 1.14344 1.21227 1.01141 0.92477 0.91253 1.21676 0.92859 1.01048 1.00998 1.21912 0.98064 0.92951 0.95920 1.21674 1.00137 0.99673 0.95218 1.21202 0.91258 0.94945 0.98458 1.23311 0.97024 0.91620 1.04506 1.21364 0.95910 1.02429 0.89843 1.17352 0.99167 0.89002 0.86073 1.91577 1.84418 1.78160 1.56444 0.76020 0.84952 1.22315 1.19709 0.81276 0.74264 0.86707 0.86024 0.83364 0.82965 0.82887 0.83140 0.83569 0.87838 0.86620 0.79970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.68 12.88 -148.98 -1.92 -1.24 16 2 C -0.09 0.41 2.44 71.24 0.17 0.58 16 3 Si 0.77 -4.63 30.24 68.60 2.07 -2.56 16 4 C -0.09 0.42 5.27 -19.78 -0.10 0.32 16 5 C -0.13 0.55 8.62 22.28 0.19 0.75 16 6 C 0.14 0.04 7.28 22.67 0.17 0.21 16 7 F -0.12 -0.80 15.55 44.97 0.70 -0.10 16 8 C -0.15 0.33 5.88 -20.06 -0.12 0.21 16 9 C 0.56 0.33 7.77 86.74 0.67 1.01 16 10 O -0.55 -5.47 14.94 -3.94 -0.06 -5.53 16 11 N -0.69 4.75 5.21 -443.03 -2.31 2.44 16 12 C 0.13 -0.75 4.32 45.52 0.20 -0.55 16 13 H 0.11 -0.20 7.46 -2.39 -0.02 -0.22 16 14 C -0.12 1.03 7.42 31.12 0.23 1.26 16 15 C -0.58 4.94 4.19 31.12 0.13 5.07 16 16 H 0.19 -2.91 8.14 -2.38 -0.02 -2.93 16 17 S 2.50 1.24 5.09 -56.49 -0.29 0.96 16 18 O -0.97 -6.63 16.44 -127.65 -2.10 -8.73 16 19 O -0.97 -7.04 17.12 -127.65 -2.19 -9.23 16 20 C -0.67 -0.33 5.66 22.27 0.13 -0.21 16 21 C -0.04 0.02 9.47 22.27 0.21 0.24 16 22 C -0.15 0.40 10.05 22.27 0.22 0.62 16 23 C -0.07 0.24 10.05 22.27 0.22 0.47 16 24 C -0.15 0.33 10.05 22.27 0.22 0.55 16 25 C -0.04 0.00 9.47 22.27 0.21 0.21 16 26 C -0.13 0.88 7.44 31.12 0.23 1.11 16 27 C -0.08 0.56 9.51 22.57 0.21 0.78 16 28 C 0.10 -0.45 7.23 22.33 0.16 -0.29 16 29 F -0.13 0.17 16.73 44.97 0.75 0.93 16 30 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 31 H 0.13 -0.77 7.89 -2.38 -0.02 -0.79 16 32 H -0.30 -0.59 7.11 99.48 0.71 0.11 16 33 H -0.27 0.87 6.68 99.48 0.66 1.53 16 34 H 0.17 -1.18 4.83 -2.91 -0.01 -1.19 16 35 H 0.42 -5.80 6.73 -92.71 -0.62 -6.43 16 36 H 0.11 -0.97 8.10 -2.39 -0.02 -0.99 16 37 H 0.12 -1.53 8.14 -2.39 -0.02 -1.55 16 38 H 0.15 -0.46 7.57 -2.91 -0.02 -0.48 16 39 H 0.15 -1.11 8.06 -2.91 -0.02 -1.14 16 40 H 0.15 -1.29 8.06 -2.91 -0.02 -1.31 16 41 H 0.15 -0.98 8.06 -2.91 -0.02 -1.00 16 42 H 0.15 -0.31 7.57 -2.91 -0.02 -0.33 16 43 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H 0.12 -0.72 7.53 -2.39 -0.02 -0.74 16 45 H 0.18 -2.66 6.41 -2.91 -0.02 -2.68 16 Total: 0.00 -33.19 401.49 -2.14 -35.33 By element: Atomic # 1 Polarization: -24.43 SS G_CDS: -0.18 Total: -24.61 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 3.37 Total: 12.35 kcal Atomic # 7 Polarization: 4.75 SS G_CDS: -2.31 Total: 2.44 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -6.26 Total: -24.73 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 1.45 Total: 0.82 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 2.07 Total: -2.56 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -0.29 Total: 0.96 kcal Total: -33.19 -2.14 -35.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.657 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds