Wall clock time and date at job start Tue Mar 9 2021 13:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47455 * 2 1 4 4 C 1.50699 * 109.46804 * 120.00043 * 2 1 3 5 5 C 1.38264 * 119.94736 * 64.99653 * 4 2 1 6 6 C 1.38142 * 120.05865 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94368 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05724 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00172 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.84648 * 25.33209 * 14 13 11 16 16 C 1.53776 * 113.61177 * 156.52864 * 14 13 11 17 17 C 1.53786 * 87.08189 * 89.11477 * 16 14 13 18 18 H 1.09000 * 113.61532 * 270.79538 * 17 16 14 19 19 S 1.81404 * 113.61392 * 139.97631 * 17 16 14 20 20 O 1.42094 * 110.54236 * 296.62588 * 19 17 16 21 21 O 1.42104 * 110.53911 * 73.37875 * 19 17 16 22 22 C 1.76198 * 104.44734 * 184.99995 * 19 17 16 23 23 C 1.38233 * 120.00016 * 269.72773 * 22 19 17 24 24 C 1.38234 * 119.99890 * 179.76515 * 23 22 19 25 25 C 1.38240 * 120.00229 * 0.49116 * 24 23 22 26 26 C 1.38235 * 119.99684 * 359.78336 * 25 24 23 27 27 C 1.38238 * 120.00072 * 359.96154 * 26 25 24 28 28 C 1.53780 * 113.60978 * 254.13648 * 14 13 11 29 29 C 1.38732 * 119.88726 * 0.26951 * 7 6 5 30 30 C 1.38138 * 119.94426 * 359.47443 * 29 7 6 31 31 H 0.96701 * 113.99830 * 300.00210 * 1 2 3 32 32 H 1.09001 * 109.46852 * 239.99695 * 2 1 3 33 33 H 1.48501 * 109.99629 * 299.99808 * 3 2 1 34 34 H 1.48501 * 109.99958 * 61.31742 * 3 2 1 35 35 H 1.08009 * 119.97297 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.03049 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 38 38 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 39 39 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 40 40 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 41 41 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 42 42 H 1.09003 * 113.61428 * 203.66102 * 16 14 13 43 43 H 1.09004 * 113.61828 * 334.48353 * 16 14 13 44 44 H 1.08000 * 120.00257 * 0.02562 * 23 22 19 45 45 H 1.08000 * 120.00486 * 180.25145 * 24 23 22 46 46 H 1.07994 * 120.00471 * 179.76883 * 25 24 23 47 47 H 1.07999 * 120.00372 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.00097 * 179.97438 * 27 26 25 49 49 H 1.08995 * 113.61757 * 25.42967 * 28 14 13 50 50 H 1.09003 * 113.60832 * 156.33616 * 28 14 13 51 51 H 1.08003 * 120.02290 * 179.72651 * 29 7 6 52 52 H 1.07997 * 119.97727 * 180.23510 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6839 -2.0605 1.3973 6 6 2.1437 -2.7141 2.5241 7 6 2.8538 -2.0146 3.4891 8 8 3.3076 -2.6555 4.5982 9 6 4.0316 -1.8724 5.5493 10 6 4.4578 -2.7590 6.7212 11 6 5.2208 -1.9331 7.7245 12 8 5.4052 -0.7515 7.5224 13 7 5.6983 -2.5074 8.8464 14 6 6.4396 -1.7043 9.8220 15 1 6.1802 -0.6463 9.7837 16 6 6.4228 -2.2916 11.2431 17 6 7.6857 -3.0757 10.8493 18 1 7.4749 -4.0488 10.4056 19 16 8.9309 -3.1567 12.1660 20 8 9.4129 -1.8568 12.4771 21 8 8.5152 -4.0488 13.1910 22 6 10.3080 -3.9638 11.4197 23 6 10.4167 -5.3406 11.4773 24 6 11.4945 -5.9741 10.8877 25 6 12.4690 -5.2300 10.2491 26 6 12.3632 -3.8528 10.1964 27 6 11.2826 -3.2196 10.7815 28 6 7.9545 -1.9680 9.8129 29 6 3.0954 -0.6587 3.3223 30 6 2.6381 -0.0109 2.1912 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5616 2.4678 -1.2085 34 1 1.5880 2.4585 1.2242 35 1 1.1306 -2.6046 0.6460 36 1 1.9498 -3.7686 2.6542 37 1 4.9161 -1.4489 5.0733 38 1 3.3956 -1.0669 5.9162 39 1 3.5731 -3.1821 7.1971 40 1 5.0937 -3.5648 6.3548 41 1 5.5511 -3.4525 9.0078 42 1 6.5947 -1.5506 12.0239 43 1 5.5587 -2.9251 11.4437 44 1 9.6573 -5.9217 11.9794 45 1 11.5774 -7.0501 10.9291 46 1 13.3130 -5.7246 9.7916 47 1 13.1247 -3.2713 9.6979 48 1 11.2002 -2.1435 10.7407 49 1 8.3270 -2.3416 8.8591 50 1 8.5444 -1.1387 10.2033 51 1 3.6441 -0.1111 4.0742 52 1 2.8292 1.0438 2.0590 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:02 Heat of formation + Delta-G solvation = -85.764712 kcal Electronic energy + Delta-G solvation = -35827.620878 eV Core-core repulsion = 30852.609140 eV Total energy + Delta-G solvation = -4975.011738 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.137 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.52845 -41.14063 -40.05785 -39.59928 -39.05849 -38.23412 -37.29501 -37.09250 -34.50501 -33.22633 -32.32653 -32.02006 -32.01728 -31.41599 -27.42192 -27.02680 -26.38199 -25.38923 -24.17693 -23.73368 -23.54593 -22.27241 -21.61483 -21.06313 -19.92491 -19.57405 -19.07136 -18.49503 -18.22441 -17.52579 -17.43762 -17.26393 -17.00245 -16.96438 -16.88090 -16.39383 -16.16058 -15.98078 -15.90152 -15.64619 -15.54806 -15.34514 -14.75784 -14.71376 -14.51507 -14.49685 -14.29569 -14.23660 -14.14667 -13.97120 -13.76541 -13.68118 -13.49257 -13.26391 -13.25583 -13.14007 -12.87115 -12.80486 -12.27869 -12.23815 -12.14924 -12.06468 -12.01952 -11.77652 -11.75987 -11.58251 -11.25388 -11.08112 -10.59333 -10.38130 -10.20776 -10.06264 -10.03527 -9.22267 -4.93428 -1.01108 -0.19544 0.27801 0.28212 0.31140 1.31619 1.48338 1.57939 1.65400 1.77069 1.93921 2.41376 2.44029 2.65247 2.72380 2.89009 3.07633 3.34557 3.44263 3.50695 3.56721 3.71827 3.79867 3.83215 3.85743 3.89573 3.92453 3.93295 4.02350 4.08693 4.26601 4.34822 4.36754 4.39958 4.43550 4.46740 4.48624 4.55571 4.56542 4.67247 4.69303 4.70257 4.72728 4.79822 4.82352 4.90138 4.93590 4.98128 5.06504 5.18460 5.25631 5.29060 5.37849 5.42347 5.49760 5.72355 5.84416 6.32349 6.43367 6.48789 7.13342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.074 4.074 3 Si 0.760 3.240 4 C -0.159 4.159 5 C -0.059 4.059 6 C -0.158 4.158 7 C 0.124 3.876 8 O -0.321 6.321 9 C 0.071 3.929 10 C -0.133 4.133 11 C 0.524 3.476 12 O -0.577 6.577 13 N -0.698 5.698 14 C 0.131 3.869 15 H 0.102 0.898 16 C -0.121 4.121 17 C -0.573 4.573 18 H 0.188 0.812 19 S 2.497 3.503 20 O -0.967 6.967 21 O -0.974 6.974 22 C -0.666 4.666 23 C -0.043 4.043 24 C -0.147 4.147 25 C -0.070 4.070 26 C -0.148 4.148 27 C -0.040 4.040 28 C -0.126 4.126 29 C -0.209 4.209 30 C -0.082 4.082 31 H 0.385 0.615 32 H 0.126 0.874 33 H -0.302 1.302 34 H -0.286 1.286 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.421 0.579 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.151 0.849 48 H 0.146 0.854 49 H 0.102 0.898 50 H 0.112 0.888 51 H 0.140 0.860 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -5.263 -2.243 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.184 4.184 3 Si 0.666 3.334 4 C -0.159 4.159 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.079 3.921 8 O -0.235 6.235 9 C -0.005 4.005 10 C -0.172 4.172 11 C 0.312 3.688 12 O -0.457 6.457 13 N -0.351 5.351 14 C 0.024 3.976 15 H 0.120 0.880 16 C -0.160 4.160 17 C -0.686 4.686 18 H 0.206 0.794 19 S 2.683 3.317 20 O -0.964 6.964 21 O -0.971 6.971 22 C -0.754 4.754 23 C -0.061 4.061 24 C -0.166 4.166 25 C -0.088 4.088 26 C -0.167 4.167 27 C -0.059 4.059 28 C -0.166 4.166 29 C -0.228 4.228 30 C -0.099 4.099 31 H 0.234 0.766 32 H 0.144 0.856 33 H -0.231 1.231 34 H -0.213 1.213 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.259 0.741 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.172 0.828 47 H 0.169 0.831 48 H 0.164 0.836 49 H 0.120 0.880 50 H 0.130 0.870 51 H 0.158 0.842 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.422 -3.843 -1.964 4.949 hybrid contribution -0.688 -0.624 0.168 0.944 sum 1.733 -4.468 -1.796 5.118 Atomic orbital electron populations 1.86567 1.18657 1.80310 1.50153 1.25097 0.83269 1.11328 0.98682 0.94123 0.90521 0.72580 0.76178 1.20239 1.02658 0.95176 0.97845 1.20992 0.96562 0.93682 0.96451 1.20676 1.01765 1.01392 0.93857 1.19172 0.94524 0.91288 0.87117 1.85955 1.69226 1.38814 1.29465 1.22479 0.95894 0.93649 0.88445 1.21441 1.03113 0.99168 0.93517 1.20630 0.78268 0.87515 0.82379 1.90762 1.59646 1.17997 1.77271 1.45484 1.55576 1.14035 1.19974 1.21617 0.91217 0.96894 0.87916 0.87971 1.23219 0.95789 0.99445 0.97534 1.31702 1.12283 1.09752 1.14894 0.79414 1.05224 0.76122 0.73478 0.76853 1.93538 1.79660 1.40006 1.83223 1.93532 1.82934 1.65934 1.54677 1.30432 1.20471 1.05503 1.18958 1.21226 0.98537 0.92377 0.94004 1.21682 0.94497 1.01883 0.98497 1.21918 0.98182 0.94326 0.94393 1.21679 0.98790 0.95628 1.00587 1.21203 0.92385 1.00619 0.91694 1.23353 0.98304 0.96108 0.98786 1.21408 1.06527 0.93899 1.00966 1.21024 0.96056 1.00079 0.92766 0.76583 0.85614 1.23078 1.21274 0.84186 0.83997 0.91346 0.91757 0.85439 0.85239 0.74057 0.87057 0.86100 0.83393 0.82919 0.82825 0.83092 0.83605 0.87980 0.86957 0.84227 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.61 12.83 -148.98 -1.91 -3.53 16 2 C -0.07 0.01 2.80 71.24 0.20 0.21 16 3 Si 0.76 -0.80 29.88 68.60 2.05 1.25 16 4 C -0.16 -0.12 5.35 -19.85 -0.11 -0.22 16 5 C -0.06 -0.07 9.68 22.25 0.22 0.15 16 6 C -0.16 -0.26 9.99 22.37 0.22 -0.04 16 7 C 0.12 0.33 6.69 22.51 0.15 0.48 16 8 O -0.32 -0.37 10.14 -92.43 -0.94 -1.31 16 9 C 0.07 -0.14 4.03 71.98 0.29 0.15 16 10 C -0.13 1.04 6.07 29.85 0.18 1.22 16 11 C 0.52 -1.86 7.83 87.66 0.69 -1.17 16 12 O -0.58 -3.29 15.60 -3.05 -0.05 -3.34 16 13 N -0.70 6.22 5.26 -440.04 -2.32 3.91 16 14 C 0.13 -0.85 4.30 45.51 0.20 -0.65 16 15 H 0.10 -0.26 7.50 -2.39 -0.02 -0.28 16 16 C -0.12 1.05 7.41 31.12 0.23 1.28 16 17 C -0.57 4.85 4.21 31.22 0.13 4.98 16 18 H 0.19 -2.82 8.14 -2.39 -0.02 -2.84 16 19 S 2.50 1.97 5.09 -56.49 -0.29 1.68 16 20 O -0.97 -6.91 16.45 -127.65 -2.10 -9.01 16 21 O -0.97 -7.37 17.12 -127.65 -2.19 -9.55 16 22 C -0.67 -0.47 5.66 22.27 0.13 -0.35 16 23 C -0.04 0.02 9.47 22.27 0.21 0.23 16 24 C -0.15 0.40 10.05 22.27 0.22 0.62 16 25 C -0.07 0.25 10.05 22.27 0.22 0.47 16 26 C -0.15 0.33 10.05 22.27 0.22 0.56 16 27 C -0.04 0.00 9.47 22.27 0.21 0.21 16 28 C -0.13 0.90 7.46 31.21 0.23 1.13 16 29 C -0.21 -0.33 9.04 22.36 0.20 -0.13 16 30 C -0.08 -0.04 8.66 22.25 0.19 0.16 16 31 H 0.39 -0.88 8.70 -74.06 -0.64 -1.52 16 32 H 0.13 -0.27 7.96 -2.39 -0.02 -0.28 16 33 H -0.30 -1.99 7.11 99.48 0.71 -1.28 16 34 H -0.29 -0.84 7.00 99.48 0.70 -0.15 16 35 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.07 -0.06 7.63 -2.39 -0.02 -0.08 16 38 H 0.06 -0.02 7.61 -2.39 -0.02 -0.03 16 39 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 40 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 41 H 0.42 -6.52 8.70 -92.71 -0.81 -7.33 16 42 H 0.11 -0.92 8.10 -2.39 -0.02 -0.94 16 43 H 0.12 -1.52 8.14 -2.39 -0.02 -1.54 16 44 H 0.15 -0.43 7.57 -2.91 -0.02 -0.45 16 45 H 0.15 -1.12 8.06 -2.91 -0.02 -1.15 16 46 H 0.15 -1.31 8.06 -2.91 -0.02 -1.34 16 47 H 0.15 -0.99 8.06 -2.91 -0.02 -1.02 16 48 H 0.15 -0.29 7.57 -2.91 -0.02 -0.32 16 49 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 50 H 0.11 -0.68 7.54 -2.39 -0.02 -0.70 16 51 H 0.14 -0.04 6.30 -2.91 -0.02 -0.06 16 52 H 0.14 -0.38 4.83 -2.91 -0.01 -0.40 16 Total: 0.00 -32.56 445.74 -3.94 -36.49 By element: Atomic # 1 Polarization: -25.44 SS G_CDS: -0.45 Total: -25.88 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 4.24 Total: 9.28 kcal Atomic # 7 Polarization: 6.22 SS G_CDS: -2.32 Total: 3.91 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -7.18 Total: -26.73 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.05 Total: 1.25 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -0.29 Total: 1.68 kcal Total: -32.56 -3.94 -36.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.270 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds