Wall clock time and date at job start Tue Mar 9 2021 13:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47311 * 2 1 4 4 C 1.50704 * 109.46921 * 239.99914 * 2 1 3 5 5 C 1.38240 * 119.94496 * 300.02334 * 4 2 1 6 6 C 1.38162 * 120.05835 * 179.97438 * 5 4 2 7 7 N 1.48000 * 120.03156 * 180.02562 * 6 5 4 8 8 O 1.21809 * 119.99917 * 359.97438 * 7 6 5 9 9 O 1.21801 * 120.00234 * 179.97438 * 7 6 5 10 10 C 1.38707 * 119.94273 * 359.97438 * 6 5 4 11 11 O 1.35905 * 120.05953 * 179.97438 * 10 6 5 12 12 C 1.42901 * 117.00270 * 179.97438 * 11 10 6 13 13 C 1.50692 * 109.46863 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00389 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99995 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00326 * 179.97438 * 15 13 12 17 17 H 1.09004 * 112.84754 * 25.33405 * 16 15 13 18 18 C 1.53779 * 113.61613 * 156.53226 * 16 15 13 19 19 C 1.53781 * 87.08236 * 89.11819 * 18 16 15 20 20 H 1.08997 * 113.61237 * 270.88404 * 19 18 16 21 21 S 1.81390 * 113.61268 * 140.06742 * 19 18 16 22 22 O 1.42104 * 110.54255 * 296.62048 * 21 19 18 23 23 O 1.42105 * 110.54713 * 73.37455 * 21 19 18 24 24 C 1.76200 * 104.45046 * 184.99926 * 21 19 18 25 25 C 1.38232 * 120.00212 * 269.73168 * 24 21 19 26 26 C 1.38233 * 120.00457 * 179.76255 * 25 24 21 27 27 C 1.38232 * 119.99614 * 0.50717 * 26 25 24 28 28 C 1.38236 * 120.00204 * 359.73936 * 27 26 25 29 29 C 1.38229 * 119.99923 * 0.02562 * 28 27 26 30 30 C 1.53782 * 113.61804 * 254.14144 * 16 15 13 31 31 C 1.38757 * 119.88748 * 359.74690 * 10 6 5 32 32 C 1.38119 * 119.94418 * 0.51088 * 31 10 6 33 33 H 0.96699 * 114.00144 * 59.99642 * 1 2 3 34 34 H 1.09004 * 109.47259 * 120.00217 * 2 1 3 35 35 H 1.48500 * 110.00056 * 298.68163 * 3 2 1 36 36 H 1.48497 * 110.00002 * 59.99910 * 3 2 1 37 37 H 1.08005 * 119.97259 * 359.95209 * 5 4 2 38 38 H 1.09000 * 109.47090 * 299.99784 * 12 11 10 39 39 H 1.09001 * 109.47066 * 60.00063 * 12 11 10 40 40 H 0.97000 * 119.99566 * 0.02562 * 15 13 12 41 41 H 1.09003 * 113.61087 * 203.66790 * 18 16 15 42 42 H 1.08999 * 113.60847 * 334.56491 * 18 16 15 43 43 H 1.08008 * 119.99977 * 359.97438 * 25 24 21 44 44 H 1.07999 * 120.00468 * 180.22218 * 26 25 24 45 45 H 1.08004 * 120.00398 * 179.72486 * 27 26 25 46 46 H 1.08001 * 120.00044 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00355 * 179.97438 * 29 28 27 48 48 H 1.09007 * 113.61247 * 25.42702 * 30 16 15 49 49 H 1.08991 * 113.61477 * 156.33199 * 30 16 15 50 50 H 1.07998 * 120.02566 * 180.25628 * 31 10 6 51 51 H 1.08002 * 119.97592 * 179.77150 * 32 31 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.5962 -2.0338 -1.4483 6 6 2.0550 -2.6873 -2.5759 7 7 1.6954 -4.1039 -2.8088 8 8 0.9950 -4.6944 -2.0060 9 8 2.0997 -4.6793 -3.8033 10 6 2.8520 -2.0142 -3.4900 11 8 3.3050 -2.6548 -4.5997 12 6 4.1205 -1.8992 -5.4976 13 6 4.5249 -2.7679 -6.6606 14 8 4.1520 -3.9207 -6.7151 15 7 5.3011 -2.2638 -7.6404 16 6 5.6948 -3.1085 -8.7708 17 1 4.9944 -3.9233 -8.9544 18 6 6.0608 -2.3139 -10.0355 19 6 7.5006 -2.2714 -9.4970 20 1 7.7013 -1.4141 -8.8546 21 16 8.7629 -2.5017 -10.7792 22 8 8.6496 -3.7917 -11.3644 23 8 8.8715 -1.3377 -11.5870 24 6 10.2846 -2.5589 -9.8928 25 6 10.9917 -1.3946 -9.6575 26 6 12.1831 -1.4388 -8.9579 27 6 12.6727 -2.6487 -8.5026 28 6 11.9682 -3.8137 -8.7422 29 6 10.7744 -3.7689 -9.4376 30 6 7.1644 -3.5589 -8.7209 31 6 3.1821 -0.6842 -3.2720 32 6 2.7254 -0.0370 -2.1406 33 1 -0.3933 0.4417 -0.7650 34 1 1.7924 -0.5139 0.8900 35 1 1.5879 2.4585 -1.2242 36 1 1.5615 2.4679 1.2085 37 1 0.9755 -2.5575 -0.7363 38 1 3.5579 -1.0406 -5.8643 39 1 5.0121 -1.5531 -4.9748 40 1 5.5997 -1.3420 -7.5967 41 1 5.9558 -2.8869 -10.9568 42 1 5.5853 -1.3345 -10.0885 43 1 10.6115 -0.4499 -10.0174 44 1 12.7337 -0.5287 -8.7709 45 1 13.6057 -2.6839 -7.9597 46 1 12.3510 -4.7590 -8.3868 47 1 10.2242 -4.6791 -9.6253 48 1 7.5794 -3.5839 -7.7132 49 1 7.3606 -4.4717 -9.2833 50 1 3.7991 -0.1567 -3.9844 51 1 2.9851 0.9971 -1.9685 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:51 Heat of formation + Delta-G solvation = -73.286752 kcal Electronic energy + Delta-G solvation = -41184.340507 eV Core-core repulsion = 35534.391038 eV Total energy + Delta-G solvation = -5649.949469 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 449.116 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.28127 -41.82577 -41.17150 -40.04239 -39.86433 -39.00482 -38.20881 -37.61388 -37.45529 -37.06818 -34.55166 -33.45874 -32.31054 -32.25054 -32.00093 -30.02878 -27.81422 -27.04096 -26.93759 -26.36015 -24.24357 -24.04200 -23.71325 -22.87492 -22.04847 -21.10731 -20.54146 -19.90587 -19.76530 -19.15054 -19.11870 -18.62705 -18.57417 -18.27962 -17.88907 -17.54832 -17.13879 -17.04376 -16.94114 -16.85009 -16.36660 -16.18156 -15.88806 -15.75653 -15.64661 -15.51296 -15.41531 -14.91369 -14.74642 -14.49713 -14.25546 -14.09366 -14.01143 -13.95197 -13.75615 -13.70687 -13.63832 -13.24232 -13.23533 -13.21057 -13.11635 -12.69527 -12.38491 -12.36243 -12.26611 -12.22026 -12.20438 -12.13044 -11.99746 -11.81251 -11.74653 -11.24206 -11.04597 -10.82839 -10.75096 -10.36636 -10.23866 -10.04569 -9.78991 -4.91678 -1.30427 -0.98977 -0.23300 -0.17778 0.16755 0.29529 0.36585 1.18173 1.26982 1.42766 1.60913 1.78412 2.02948 2.05968 2.27599 2.43444 2.73419 2.91335 3.08676 3.12211 3.24564 3.35037 3.36860 3.45601 3.51422 3.62278 3.72542 3.77568 3.82275 3.89271 3.95130 3.95202 4.04103 4.10268 4.30214 4.38410 4.40210 4.41860 4.46512 4.50595 4.56313 4.56636 4.64927 4.71035 4.72500 4.83421 4.85329 4.88678 4.95329 5.08323 5.08553 5.20175 5.27384 5.39250 5.39656 5.76783 5.86092 6.42120 6.43299 6.45109 7.14316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.092 4.092 3 Si 0.790 3.210 4 C -0.148 4.148 5 C -0.004 4.004 6 C -0.105 4.105 7 N 0.034 4.966 8 O -0.208 6.208 9 O -0.170 6.170 10 C 0.195 3.805 11 O -0.292 6.292 12 C 0.023 3.977 13 C 0.512 3.488 14 O -0.561 6.561 15 N -0.690 5.690 16 C 0.131 3.869 17 H 0.096 0.904 18 C -0.118 4.118 19 C -0.570 4.570 20 H 0.196 0.804 21 S 2.496 3.504 22 O -0.970 6.970 23 O -0.972 6.972 24 C -0.665 4.665 25 C -0.040 4.040 26 C -0.146 4.146 27 C -0.071 4.071 28 C -0.149 4.149 29 C -0.041 4.041 30 C -0.128 4.128 31 C -0.187 4.187 32 C -0.005 4.005 33 H 0.389 0.611 34 H 0.126 0.874 35 H -0.260 1.260 36 H -0.311 1.311 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.426 0.574 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.143 0.857 48 H 0.103 0.897 49 H 0.108 0.892 50 H 0.209 0.791 51 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 14.626 3.660 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.198 4.198 3 Si 0.693 3.307 4 C -0.149 4.149 5 C -0.023 4.023 6 C -0.190 4.190 7 N 0.544 4.456 8 O -0.414 6.414 9 O -0.385 6.385 10 C 0.145 3.855 11 O -0.202 6.202 12 C -0.054 4.054 13 C 0.298 3.702 14 O -0.437 6.437 15 N -0.345 5.345 16 C 0.024 3.976 17 H 0.114 0.886 18 C -0.157 4.157 19 C -0.683 4.683 20 H 0.213 0.787 21 S 2.682 3.318 22 O -0.967 6.967 23 O -0.969 6.969 24 C -0.753 4.753 25 C -0.059 4.059 26 C -0.164 4.164 27 C -0.088 4.088 28 C -0.168 4.168 29 C -0.060 4.060 30 C -0.167 4.167 31 C -0.206 4.206 32 C -0.022 4.022 33 H 0.238 0.762 34 H 0.144 0.856 35 H -0.186 1.186 36 H -0.239 1.239 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.265 0.735 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.169 0.831 44 H 0.172 0.828 45 H 0.171 0.829 46 H 0.166 0.834 47 H 0.161 0.839 48 H 0.121 0.879 49 H 0.127 0.873 50 H 0.225 0.775 51 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.351 14.655 3.276 16.719 hybrid contribution -0.932 -0.956 0.198 1.350 sum 6.419 13.699 3.474 15.522 Atomic orbital electron populations 1.86635 1.18550 1.80451 1.50343 1.25527 0.83578 1.13116 0.97624 0.94196 0.89211 0.69881 0.77415 1.20372 1.02123 0.92563 0.99854 1.20832 0.94186 0.94802 0.92529 1.20861 1.13469 0.81486 1.03174 1.43917 0.98226 1.04024 0.99451 1.94513 1.36244 1.68379 1.42238 1.94672 1.56216 1.69363 1.18234 1.18952 0.89578 0.92043 0.84891 1.86470 1.63712 1.39740 1.30271 1.23150 0.98421 0.94424 0.89375 1.20513 0.78147 0.87680 0.83889 1.90874 1.54869 1.20172 1.77795 1.45215 1.51557 1.16449 1.21262 1.21597 0.95797 0.94311 0.85909 0.88599 1.23211 0.89784 1.04666 0.98037 1.31707 1.10754 1.10085 1.15774 0.78712 1.05257 0.76166 0.73410 0.76953 1.93544 1.86654 1.41232 1.75314 1.93534 1.86368 1.50768 1.66221 1.30431 1.23682 1.00310 1.20848 1.21238 0.94504 0.97177 0.93002 1.21684 0.96464 0.99631 0.98653 1.21910 0.99392 0.92381 0.95152 1.21660 0.95351 1.00173 0.99633 1.21181 0.96121 0.96427 0.92292 1.23348 0.96702 0.94415 1.02254 1.21821 1.06166 0.90334 1.02257 1.21722 0.89362 1.01294 0.89814 0.76152 0.85577 1.18590 1.23933 0.83369 0.83677 0.83362 0.73508 0.87298 0.85511 0.83116 0.82772 0.82900 0.83367 0.83901 0.87863 0.87342 0.77465 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.22 12.77 -148.98 -1.90 -0.68 16 2 C -0.09 0.67 2.82 71.24 0.20 0.88 16 3 Si 0.79 -8.83 29.78 68.60 2.04 -6.78 16 4 C -0.15 1.06 5.39 -19.85 -0.11 0.96 16 5 C 0.00 0.00 9.11 22.25 0.20 0.20 16 6 C -0.10 -0.56 6.86 36.47 0.25 -0.31 16 7 N 0.03 0.53 4.45 -46.25 -0.21 0.32 16 8 O -0.21 -3.71 18.45 18.87 0.35 -3.36 16 9 O -0.17 -3.41 17.24 25.61 0.44 -2.97 16 10 C 0.20 -0.35 6.67 22.51 0.15 -0.20 16 11 O -0.29 -0.47 7.68 -63.46 -0.49 -0.95 16 12 C 0.02 -0.25 5.22 71.23 0.37 0.12 16 13 C 0.51 -1.57 7.91 87.65 0.69 -0.88 16 14 O -0.56 -6.27 16.12 16.00 0.26 -6.01 16 15 N -0.69 7.56 5.26 -440.04 -2.32 5.25 16 16 C 0.13 -0.89 4.30 45.52 0.20 -0.70 16 17 H 0.10 -0.11 7.50 -2.39 -0.02 -0.13 16 18 C -0.12 1.18 7.41 31.12 0.23 1.41 16 19 C -0.57 5.78 4.20 31.21 0.13 5.91 16 20 H 0.20 -3.55 8.14 -2.39 -0.02 -3.57 16 21 S 2.50 -0.63 5.09 -56.49 -0.29 -0.92 16 22 O -0.97 -6.80 16.46 -127.65 -2.10 -8.90 16 23 O -0.97 -5.93 17.12 -127.65 -2.19 -8.11 16 24 C -0.67 0.22 5.66 22.27 0.13 0.35 16 25 C -0.04 0.08 9.47 22.27 0.21 0.29 16 26 C -0.15 0.60 10.05 22.27 0.22 0.82 16 27 C -0.07 0.30 10.05 22.27 0.22 0.53 16 28 C -0.15 0.38 10.05 22.27 0.22 0.60 16 29 C -0.04 0.01 9.47 22.27 0.21 0.22 16 30 C -0.13 0.95 7.46 31.21 0.23 1.18 16 31 C -0.19 2.49 9.04 22.37 0.20 2.69 16 32 C 0.00 0.06 8.66 22.25 0.19 0.26 16 33 H 0.39 -3.33 8.70 -74.06 -0.64 -3.98 16 34 H 0.13 -0.99 7.96 -2.38 -0.02 -1.01 16 35 H -0.26 2.63 7.11 99.48 0.71 3.34 16 36 H -0.31 0.24 7.11 99.48 0.71 0.95 16 37 H 0.15 0.43 7.61 -2.91 -0.02 0.41 16 38 H 0.15 -2.86 7.65 -2.39 -0.02 -2.88 16 39 H 0.15 -3.01 7.67 -2.39 -0.02 -3.03 16 40 H 0.43 -8.63 8.70 -92.71 -0.81 -9.43 16 41 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16 42 H 0.13 -1.91 8.14 -2.39 -0.02 -1.93 16 43 H 0.15 -0.75 7.57 -2.91 -0.02 -0.77 16 44 H 0.15 -1.39 8.06 -2.91 -0.02 -1.41 16 45 H 0.15 -1.41 8.06 -2.91 -0.02 -1.43 16 46 H 0.15 -0.95 8.06 -2.91 -0.02 -0.97 16 47 H 0.14 -0.24 7.57 -2.91 -0.02 -0.27 16 48 H 0.10 -0.93 8.14 -2.38 -0.02 -0.95 16 49 H 0.11 -0.58 7.55 -2.39 -0.02 -0.60 16 50 H 0.21 -4.95 6.30 -2.91 -0.02 -4.97 16 51 H 0.19 -3.97 4.87 -2.91 -0.01 -3.99 16 Total: 0.00 -53.80 450.80 -2.60 -56.40 By element: Atomic # 1 Polarization: -37.23 SS G_CDS: -0.38 Total: -37.60 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 4.17 Total: 14.33 kcal Atomic # 7 Polarization: 8.09 SS G_CDS: -2.52 Total: 5.57 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -5.63 Total: -30.99 kcal Atomic # 14 Polarization: -8.83 SS G_CDS: 2.04 Total: -6.78 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -0.29 Total: -0.92 kcal Total: -53.80 -2.60 -56.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.886 kcal (2) G-P(sol) polarization free energy of solvation -53.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds