Wall clock time and date at job start Tue Mar 9 2021 13:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47122 * 2 1 4 4 C 1.50704 * 109.46807 * 119.99870 * 2 1 3 5 5 C 1.38248 * 119.96902 * 245.02503 * 4 2 1 6 6 C 1.38291 * 120.10966 * 179.97438 * 5 4 2 7 7 C 1.38121 * 120.05408 * 359.76441 * 6 5 4 8 8 C 1.38761 * 119.94483 * 0.50511 * 7 6 5 9 9 O 1.35896 * 120.05444 * 179.74726 * 8 7 6 10 10 C 1.42905 * 117.00039 * 359.72609 * 9 8 7 11 11 C 1.50699 * 109.46972 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.84790 * 334.66860 * 14 13 11 16 16 C 1.53785 * 113.61395 * 105.85632 * 14 13 11 17 17 C 1.54056 * 86.98219 * 89.16453 * 16 14 13 18 18 H 1.09000 * 113.68862 * 270.87496 * 17 16 14 19 19 S 1.81398 * 113.61902 * 139.97817 * 17 16 14 20 20 O 1.42103 * 110.54000 * 194.12706 * 19 17 16 21 21 O 1.42099 * 110.54521 * 330.87690 * 19 17 16 22 22 C 1.76201 * 104.44955 * 82.50550 * 19 17 16 23 23 C 1.38234 * 119.99770 * 269.72674 * 22 19 17 24 24 C 1.38243 * 119.99469 * 179.81149 * 23 22 19 25 25 C 1.38232 * 120.00104 * 0.39296 * 24 23 22 26 26 C 1.38239 * 120.00079 * 359.86136 * 25 24 23 27 27 C 1.38235 * 119.99921 * 359.95228 * 26 25 24 28 28 C 1.53772 * 113.61622 * 203.46775 * 14 13 11 29 29 C 1.38159 * 119.97201 * 64.99929 * 4 2 1 30 30 H 0.96702 * 114.00179 * 60.00322 * 1 2 3 31 31 H 1.08994 * 109.47312 * 239.99625 * 2 1 3 32 32 H 1.48499 * 109.99894 * 298.67856 * 3 2 1 33 33 H 1.48497 * 110.00166 * 59.99461 * 3 2 1 34 34 H 1.08002 * 119.94351 * 359.97230 * 5 4 2 35 35 H 1.07990 * 119.96953 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.02835 * 180.28086 * 7 6 5 37 37 H 1.09000 * 109.47187 * 300.00222 * 10 9 8 38 38 H 1.09001 * 109.46558 * 60.00270 * 10 9 8 39 39 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 40 40 H 1.08998 * 113.61672 * 203.66296 * 16 14 13 41 41 H 1.09001 * 113.61836 * 334.57634 * 16 14 13 42 42 H 1.07995 * 120.00005 * 0.02562 * 23 22 19 43 43 H 1.08002 * 119.99372 * 180.23122 * 24 23 22 44 44 H 1.08002 * 119.99434 * 179.83288 * 25 24 23 45 45 H 1.07999 * 119.99543 * 179.97438 * 26 25 24 46 46 H 1.07996 * 119.99893 * 180.02562 * 27 26 25 47 47 H 1.09006 * 113.61353 * 25.43058 * 28 14 13 48 48 H 1.08999 * 113.61864 * 156.33229 * 28 14 13 49 49 H 1.08000 * 120.03266 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6382 -0.0115 2.1913 6 6 3.1000 -0.6604 3.3218 7 6 2.8516 -2.0078 3.4960 8 6 2.1471 -2.7128 2.5305 9 8 1.9060 -4.0398 2.6972 10 6 2.4121 -4.6466 3.8879 11 6 2.0512 -6.1097 3.8985 12 8 1.4228 -6.5860 2.9770 13 7 2.4266 -6.8889 4.9321 14 6 2.0762 -8.3114 4.9422 15 1 1.1900 -8.5332 4.3476 16 6 3.2651 -9.2408 4.6460 17 6 3.5367 -9.2423 6.1625 18 1 4.1968 -8.4391 6.4899 19 16 4.0251 -10.8642 6.8117 20 8 3.9439 -10.8785 8.2303 21 8 3.4507 -11.9060 6.0345 22 6 5.7512 -10.9713 6.4742 23 6 6.1897 -11.5157 5.2816 24 6 7.5439 -11.5961 5.0152 25 6 8.4595 -11.1396 5.9448 26 6 8.0210 -10.6001 7.1396 27 6 6.6668 -10.5161 7.4044 28 6 2.0432 -8.9277 6.3506 29 6 1.6844 -2.0594 1.3978 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5139 -0.8899 32 1 1.5879 2.4585 -1.2243 33 1 1.5614 2.4680 1.2084 34 1 2.8301 1.0430 2.0586 35 1 3.6516 -0.1121 4.0710 36 1 3.2085 -2.5131 4.3812 37 1 3.4965 -4.5400 3.9173 38 1 1.9752 -4.1578 4.7587 39 1 2.9295 -6.5081 5.6690 40 1 2.9711 -10.2145 4.2542 41 1 4.0536 -8.7682 4.0603 42 1 5.4744 -11.8749 4.5566 43 1 7.8864 -12.0180 4.0819 44 1 9.5174 -11.2050 5.7377 45 1 8.7364 -10.2438 7.8660 46 1 6.3243 -10.0942 8.3376 47 1 1.8459 -8.2025 7.1401 48 1 1.4158 -9.8160 6.4240 49 1 1.1321 -2.6050 0.6470 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:11 Heat of formation + Delta-G solvation = -69.591997 kcal Electronic energy + Delta-G solvation = -34195.376183 eV Core-core repulsion = 29376.603366 eV Total energy + Delta-G solvation = -4818.772817 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.74278 -41.09288 -40.17778 -39.65350 -38.71229 -38.14649 -37.37777 -36.99557 -34.63502 -32.63025 -32.43832 -32.13460 -31.72266 -29.58688 -27.28786 -27.06343 -26.58433 -24.29099 -23.84656 -23.68287 -22.90414 -21.69875 -21.22673 -19.99248 -19.38354 -19.08084 -18.55134 -18.48824 -17.98529 -17.51980 -17.46689 -17.13268 -17.07366 -16.99921 -16.78680 -16.04310 -15.83992 -15.77519 -15.63347 -15.55746 -15.35647 -14.81991 -14.64461 -14.57638 -14.35562 -14.16513 -14.09336 -14.07239 -13.92134 -13.76051 -13.59984 -13.34911 -13.33386 -13.12918 -13.03347 -12.52148 -12.39172 -12.37309 -12.23152 -12.19115 -12.01966 -11.85570 -11.68651 -11.35031 -11.04107 -10.55163 -10.49565 -10.39310 -10.15938 -9.93220 -9.28408 -4.98994 -1.06651 -0.27340 0.17987 0.18352 0.39627 1.19570 1.31730 1.32715 1.57396 1.71402 1.92557 2.31025 2.41323 2.55674 2.60602 2.75163 2.91995 3.24493 3.28138 3.31111 3.37239 3.52150 3.67035 3.73188 3.74626 3.78995 3.80852 3.84471 3.89201 4.01624 4.16368 4.18478 4.19278 4.20702 4.21352 4.27881 4.35816 4.43514 4.48971 4.56348 4.57101 4.58529 4.65709 4.80252 4.95177 4.95331 5.12079 5.17563 5.21138 5.25631 5.33313 5.45080 5.61752 5.70962 6.10357 6.30138 6.41566 6.93461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.079 4.079 3 Si 0.688 3.312 4 C -0.033 4.033 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.128 3.872 9 O -0.288 6.288 10 C 0.041 3.959 11 C 0.520 3.480 12 O -0.505 6.505 13 N -0.712 5.712 14 C 0.136 3.864 15 H 0.119 0.881 16 C -0.124 4.124 17 C -0.604 4.604 18 H 0.155 0.845 19 S 2.499 3.501 20 O -0.934 6.934 21 O -0.929 6.929 22 C -0.659 4.659 23 C -0.023 4.023 24 C -0.140 4.140 25 C -0.064 4.064 26 C -0.140 4.140 27 C -0.026 4.026 28 C -0.116 4.116 29 C -0.119 4.119 30 H 0.381 0.619 31 H 0.079 0.921 32 H -0.261 1.261 33 H -0.255 1.255 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.404 0.596 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.141 0.859 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 4.434 0.811 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.189 4.189 3 Si 0.590 3.410 4 C -0.033 4.033 5 C -0.169 4.169 6 C -0.091 4.091 7 C -0.225 4.225 8 C 0.083 3.917 9 O -0.201 6.201 10 C -0.038 4.038 11 C 0.304 3.696 12 O -0.377 6.377 13 N -0.366 5.366 14 C 0.030 3.970 15 H 0.137 0.863 16 C -0.163 4.163 17 C -0.714 4.714 18 H 0.173 0.827 19 S 2.680 3.320 20 O -0.931 6.931 21 O -0.926 6.926 22 C -0.746 4.746 23 C -0.041 4.041 24 C -0.159 4.159 25 C -0.083 4.083 26 C -0.159 4.159 27 C -0.045 4.045 28 C -0.156 4.156 29 C -0.137 4.137 30 H 0.229 0.771 31 H 0.097 0.903 32 H -0.186 1.186 33 H -0.180 1.180 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.239 0.761 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.119 0.881 48 H 0.129 0.871 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.719 3.854 0.954 6.962 hybrid contribution 0.200 0.537 -0.114 0.584 sum 5.919 4.391 0.840 7.417 Atomic orbital electron populations 1.86603 1.17547 1.80221 1.49789 1.24862 0.84706 1.11165 0.98121 0.94969 0.91599 0.74271 0.80209 1.19029 0.96750 0.92724 0.94797 1.20939 1.01390 0.99841 0.94698 1.20878 0.97691 0.93581 0.96907 1.21277 1.04859 0.96088 1.00239 1.18989 0.95580 0.82334 0.94825 1.86165 1.73844 1.20172 1.39888 1.22436 1.00750 0.91569 0.89032 1.20066 0.79597 0.87487 0.82420 1.90807 1.37591 1.74700 1.34648 1.45440 1.58633 1.08907 1.23637 1.21672 0.98807 0.79632 0.96912 0.86310 1.23312 1.00080 1.02794 0.90159 1.31847 1.07292 1.23113 1.09136 0.82687 1.05414 0.74465 0.77052 0.75067 1.93588 1.85676 1.86548 1.27262 1.93594 1.76367 1.50558 1.72098 1.30511 1.24739 1.15327 1.04010 1.21000 0.96954 0.92097 0.94098 1.21379 0.93131 1.00978 1.00361 1.21580 1.00349 0.93255 0.93066 1.21362 0.95830 1.00855 0.97847 1.20989 0.93187 0.93297 0.97059 1.23069 0.90363 1.03261 0.98864 1.20247 1.02478 0.93719 0.97296 0.77107 0.90296 1.18615 1.17950 0.85268 0.84987 0.85235 0.88615 0.88598 0.76118 0.86399 0.88817 0.84031 0.84788 0.85008 0.84825 0.84127 0.88148 0.87062 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.89 12.81 -35.23 -0.45 -1.34 16 2 C -0.08 -0.02 2.79 36.01 0.10 0.08 16 3 Si 0.69 -0.71 29.85 -169.99 -5.07 -5.78 16 4 C -0.03 -0.05 5.38 -104.64 -0.56 -0.61 16 5 C -0.15 -0.04 8.67 -39.56 -0.34 -0.38 16 6 C -0.07 0.05 10.04 -39.61 -0.40 -0.35 16 7 C -0.21 0.09 9.04 -39.43 -0.36 -0.27 16 8 C 0.13 0.25 6.69 -39.21 -0.26 -0.01 16 9 O -0.29 -0.76 9.67 -39.33 -0.38 -1.14 16 10 C 0.04 -0.07 5.22 36.01 0.19 0.12 16 11 C 0.52 0.11 7.91 -10.99 -0.09 0.02 16 12 O -0.50 -2.68 16.12 -14.35 -0.23 -2.91 16 13 N -0.71 2.28 5.26 -53.02 -0.28 2.00 16 14 C 0.14 -0.34 4.29 -67.12 -0.29 -0.63 16 15 H 0.12 -0.11 7.50 -51.93 -0.39 -0.50 16 16 C -0.12 0.37 7.46 -25.77 -0.19 0.18 16 17 C -0.60 2.26 4.21 -25.77 -0.11 2.15 16 18 H 0.16 -1.00 8.14 -51.93 -0.42 -1.42 16 19 S 2.50 -0.05 5.13 -107.50 -0.55 -0.60 16 20 O -0.93 -2.93 17.13 -57.54 -0.99 -3.92 16 21 O -0.93 -2.60 16.30 -57.54 -0.94 -3.53 16 22 C -0.66 -0.06 5.66 -39.58 -0.22 -0.28 16 23 C -0.02 0.00 9.47 -39.58 -0.37 -0.37 16 24 C -0.14 0.13 10.05 -39.58 -0.40 -0.27 16 25 C -0.06 0.09 10.05 -39.58 -0.40 -0.31 16 26 C -0.14 0.15 10.05 -39.58 -0.40 -0.25 16 27 C -0.03 0.01 9.47 -39.58 -0.37 -0.37 16 28 C -0.12 0.44 7.41 -25.92 -0.19 0.25 16 29 C -0.12 -0.32 9.62 -39.44 -0.38 -0.70 16 30 H 0.38 -0.93 8.74 45.56 0.40 -0.53 16 31 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H -0.26 -0.26 7.11 56.52 0.40 0.15 16 33 H -0.25 -0.50 7.05 56.52 0.40 -0.10 16 34 H 0.13 -0.18 4.86 -52.49 -0.26 -0.44 16 35 H 0.13 -0.42 8.06 -52.49 -0.42 -0.84 16 36 H 0.13 -0.44 6.30 -52.49 -0.33 -0.77 16 37 H 0.10 -0.43 7.67 -51.93 -0.40 -0.83 16 38 H 0.10 -0.40 7.65 -51.93 -0.40 -0.79 16 39 H 0.40 -2.63 8.70 -40.82 -0.36 -2.99 16 40 H 0.12 -0.35 7.43 -51.93 -0.39 -0.73 16 41 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 42 H 0.14 -0.20 7.56 -52.49 -0.40 -0.60 16 43 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 44 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 45 H 0.13 -0.42 8.06 -52.49 -0.42 -0.85 16 46 H 0.14 -0.24 7.57 -52.49 -0.40 -0.64 16 47 H 0.10 -0.52 8.14 -51.93 -0.42 -0.95 16 48 H 0.11 -0.46 8.10 -51.93 -0.42 -0.88 16 49 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 LS Contribution 424.67 15.07 6.40 6.40 Total: 0.00 -15.64 424.67 -13.87 -29.51 By element: Atomic # 1 Polarization: -10.36 SS G_CDS: -6.33 Total: -16.68 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -5.05 Total: -1.99 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -0.28 Total: 2.00 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -2.99 Total: -12.84 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.07 Total: -5.78 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -0.55 Total: -0.60 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -15.64 -13.87 -29.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.085 kcal (2) G-P(sol) polarization free energy of solvation -15.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds