Wall clock time and date at job start Tue Mar 9 2021 13:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47122 * 2 1 4 4 C 1.50704 * 109.46807 * 119.99870 * 2 1 3 5 5 C 1.38248 * 119.96902 * 245.02503 * 4 2 1 6 6 C 1.38291 * 120.10966 * 179.97438 * 5 4 2 7 7 C 1.38121 * 120.05408 * 359.76441 * 6 5 4 8 8 C 1.38761 * 119.94483 * 0.50511 * 7 6 5 9 9 O 1.35896 * 120.05444 * 179.74726 * 8 7 6 10 10 C 1.42905 * 117.00039 * 359.72609 * 9 8 7 11 11 C 1.50699 * 109.46972 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.84790 * 334.66860 * 14 13 11 16 16 C 1.53785 * 113.61395 * 105.85632 * 14 13 11 17 17 C 1.54056 * 86.98219 * 89.16453 * 16 14 13 18 18 H 1.09000 * 113.68862 * 270.87496 * 17 16 14 19 19 S 1.81398 * 113.61902 * 139.97817 * 17 16 14 20 20 O 1.42103 * 110.54000 * 194.12706 * 19 17 16 21 21 O 1.42099 * 110.54521 * 330.87690 * 19 17 16 22 22 C 1.76201 * 104.44955 * 82.50550 * 19 17 16 23 23 C 1.38234 * 119.99770 * 269.72674 * 22 19 17 24 24 C 1.38243 * 119.99469 * 179.81149 * 23 22 19 25 25 C 1.38232 * 120.00104 * 0.39296 * 24 23 22 26 26 C 1.38239 * 120.00079 * 359.86136 * 25 24 23 27 27 C 1.38235 * 119.99921 * 359.95228 * 26 25 24 28 28 C 1.53772 * 113.61622 * 203.46775 * 14 13 11 29 29 C 1.38159 * 119.97201 * 64.99929 * 4 2 1 30 30 H 0.96702 * 114.00179 * 60.00322 * 1 2 3 31 31 H 1.08994 * 109.47312 * 239.99625 * 2 1 3 32 32 H 1.48499 * 109.99894 * 298.67856 * 3 2 1 33 33 H 1.48497 * 110.00166 * 59.99461 * 3 2 1 34 34 H 1.08002 * 119.94351 * 359.97230 * 5 4 2 35 35 H 1.07990 * 119.96953 * 180.02562 * 6 5 4 36 36 H 1.07995 * 120.02835 * 180.28086 * 7 6 5 37 37 H 1.09000 * 109.47187 * 300.00222 * 10 9 8 38 38 H 1.09001 * 109.46558 * 60.00270 * 10 9 8 39 39 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 40 40 H 1.08998 * 113.61672 * 203.66296 * 16 14 13 41 41 H 1.09001 * 113.61836 * 334.57634 * 16 14 13 42 42 H 1.07995 * 120.00005 * 0.02562 * 23 22 19 43 43 H 1.08002 * 119.99372 * 180.23122 * 24 23 22 44 44 H 1.08002 * 119.99434 * 179.83288 * 25 24 23 45 45 H 1.07999 * 119.99543 * 179.97438 * 26 25 24 46 46 H 1.07996 * 119.99893 * 180.02562 * 27 26 25 47 47 H 1.09006 * 113.61353 * 25.43058 * 28 14 13 48 48 H 1.08999 * 113.61864 * 156.33229 * 28 14 13 49 49 H 1.08000 * 120.03266 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6382 -0.0115 2.1913 6 6 3.1000 -0.6604 3.3218 7 6 2.8516 -2.0078 3.4960 8 6 2.1471 -2.7128 2.5305 9 8 1.9060 -4.0398 2.6972 10 6 2.4121 -4.6466 3.8879 11 6 2.0512 -6.1097 3.8985 12 8 1.4228 -6.5860 2.9770 13 7 2.4266 -6.8889 4.9321 14 6 2.0762 -8.3114 4.9422 15 1 1.1900 -8.5332 4.3476 16 6 3.2651 -9.2408 4.6460 17 6 3.5367 -9.2423 6.1625 18 1 4.1968 -8.4391 6.4899 19 16 4.0251 -10.8642 6.8117 20 8 3.9439 -10.8785 8.2303 21 8 3.4507 -11.9060 6.0345 22 6 5.7512 -10.9713 6.4742 23 6 6.1897 -11.5157 5.2816 24 6 7.5439 -11.5961 5.0152 25 6 8.4595 -11.1396 5.9448 26 6 8.0210 -10.6001 7.1396 27 6 6.6668 -10.5161 7.4044 28 6 2.0432 -8.9277 6.3506 29 6 1.6844 -2.0594 1.3978 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5139 -0.8899 32 1 1.5879 2.4585 -1.2243 33 1 1.5614 2.4680 1.2084 34 1 2.8301 1.0430 2.0586 35 1 3.6516 -0.1121 4.0710 36 1 3.2085 -2.5131 4.3812 37 1 3.4965 -4.5400 3.9173 38 1 1.9752 -4.1578 4.7587 39 1 2.9295 -6.5081 5.6690 40 1 2.9711 -10.2145 4.2542 41 1 4.0536 -8.7682 4.0603 42 1 5.4744 -11.8749 4.5566 43 1 7.8864 -12.0180 4.0819 44 1 9.5174 -11.2050 5.7377 45 1 8.7364 -10.2438 7.8660 46 1 6.3243 -10.0942 8.3376 47 1 1.8459 -8.2025 7.1401 48 1 1.4158 -9.8160 6.4240 49 1 1.1321 -2.6050 0.6470 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:10 Heat of formation + Delta-G solvation = -76.067239 kcal Electronic energy + Delta-G solvation = -34195.656971 eV Core-core repulsion = 29376.603366 eV Total energy + Delta-G solvation = -4819.053605 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.68828 -41.02223 -40.05339 -39.59615 -38.73226 -38.23059 -37.40555 -37.08761 -34.57719 -32.60117 -32.32299 -32.01357 -31.67562 -29.49396 -27.05739 -26.97544 -26.49095 -24.18670 -23.72775 -23.66084 -22.84473 -21.63688 -21.10391 -19.92644 -19.30794 -19.02497 -18.59802 -18.42460 -17.91256 -17.43989 -17.40762 -17.02751 -17.01080 -16.95152 -16.72280 -15.94028 -15.79289 -15.72692 -15.59252 -15.51221 -15.28742 -14.77711 -14.53485 -14.50898 -14.25503 -14.13244 -14.03835 -13.91941 -13.77317 -13.76034 -13.55556 -13.29935 -13.25320 -13.24138 -13.13382 -12.52152 -12.23388 -12.19585 -12.10914 -12.02557 -11.98996 -11.77640 -11.70308 -11.26322 -11.06628 -10.55402 -10.38502 -10.27741 -10.05897 -9.91574 -9.28274 -4.92269 -1.01011 -0.19198 0.20549 0.28197 0.39482 1.25795 1.37231 1.42558 1.61557 1.77361 1.94356 2.41906 2.52956 2.63457 2.69319 2.89068 3.06416 3.35766 3.38083 3.45139 3.54020 3.79536 3.80136 3.83550 3.87527 3.93843 4.01624 4.08756 4.09155 4.13548 4.25545 4.27334 4.37170 4.39903 4.43424 4.47684 4.48844 4.53535 4.65316 4.69567 4.69804 4.80917 4.86022 4.94010 4.97918 5.06957 5.23383 5.26087 5.35118 5.36835 5.38301 5.47059 5.68439 5.84833 6.25595 6.43047 6.55143 7.07378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.098 4.098 3 Si 0.782 3.218 4 C -0.048 4.048 5 C -0.161 4.161 6 C -0.071 4.071 7 C -0.201 4.201 8 C 0.115 3.885 9 O -0.322 6.322 10 C 0.036 3.964 11 C 0.517 3.483 12 O -0.568 6.568 13 N -0.691 5.691 14 C 0.130 3.870 15 H 0.098 0.902 16 C -0.127 4.127 17 C -0.573 4.573 18 H 0.192 0.808 19 S 2.498 3.502 20 O -0.971 6.971 21 O -0.968 6.968 22 C -0.666 4.666 23 C -0.041 4.041 24 C -0.149 4.149 25 C -0.070 4.070 26 C -0.146 4.146 27 C -0.041 4.041 28 C -0.117 4.117 29 C -0.150 4.150 30 H 0.395 0.605 31 H 0.089 0.911 32 H -0.288 1.288 33 H -0.293 1.293 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.424 0.576 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.150 0.850 47 H 0.124 0.876 48 H 0.111 0.889 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.196 6.213 2.447 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.205 4.205 3 Si 0.686 3.314 4 C -0.048 4.048 5 C -0.179 4.179 6 C -0.088 4.088 7 C -0.219 4.219 8 C 0.070 3.930 9 O -0.236 6.236 10 C -0.042 4.042 11 C 0.304 3.696 12 O -0.446 6.446 13 N -0.345 5.345 14 C 0.022 3.978 15 H 0.116 0.884 16 C -0.167 4.167 17 C -0.686 4.686 18 H 0.210 0.790 19 S 2.684 3.316 20 O -0.968 6.968 21 O -0.966 6.966 22 C -0.754 4.754 23 C -0.060 4.060 24 C -0.167 4.167 25 C -0.088 4.088 26 C -0.165 4.165 27 C -0.060 4.060 28 C -0.157 4.157 29 C -0.169 4.169 30 H 0.245 0.755 31 H 0.107 0.893 32 H -0.215 1.215 33 H -0.220 1.220 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.263 0.737 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.143 0.857 48 H 0.129 0.871 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.042 5.575 2.643 10.136 hybrid contribution -0.525 -0.023 -0.629 0.819 sum 7.517 5.551 2.015 9.560 Atomic orbital electron populations 1.86556 1.18659 1.80878 1.50961 1.25243 0.84084 1.12842 0.98359 0.93947 0.90029 0.70996 0.76443 1.19254 0.97294 0.92494 0.95748 1.21211 1.01221 1.00577 0.94859 1.21318 0.96898 0.93693 0.96918 1.21642 1.03577 0.96222 1.00489 1.19142 0.96255 0.82359 0.95259 1.86116 1.74703 1.20701 1.42060 1.22759 1.02882 0.89887 0.88642 1.20545 0.78570 0.88518 0.82002 1.90786 1.40678 1.75926 1.37174 1.45262 1.57656 1.08308 1.23307 1.21637 0.98380 0.80125 0.97610 0.88366 1.23359 1.00094 1.02544 0.90665 1.31715 1.08029 1.20647 1.08160 0.79031 1.05204 0.74256 0.78143 0.74019 1.93535 1.86200 1.87661 1.29452 1.93540 1.77128 1.53502 1.72388 1.30431 1.24494 1.16059 1.04385 1.21195 0.97697 0.92700 0.94412 1.21672 0.92919 1.00877 1.01275 1.21918 1.01484 0.92597 0.92798 1.21688 0.95914 1.00479 0.98408 1.21236 0.93690 0.93719 0.97384 1.23202 0.90034 1.03770 0.98651 1.20305 1.03998 0.94566 0.98043 0.75494 0.89260 1.21514 1.22035 0.83867 0.81843 0.81760 0.85185 0.85616 0.73681 0.86989 0.87926 0.83774 0.83209 0.82820 0.82815 0.83227 0.85728 0.87088 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.78 12.81 -148.98 -1.91 -4.69 16 2 C -0.10 -0.15 2.79 71.24 0.20 0.05 16 3 Si 0.78 -1.60 29.85 68.60 2.05 0.45 16 4 C -0.05 -0.19 5.38 -19.88 -0.11 -0.30 16 5 C -0.16 0.02 8.67 22.28 0.19 0.21 16 6 C -0.07 0.25 10.04 22.25 0.22 0.47 16 7 C -0.20 0.57 9.04 22.37 0.20 0.77 16 8 C 0.11 0.49 6.69 22.51 0.15 0.64 16 9 O -0.32 -1.92 9.67 -73.35 -0.71 -2.63 16 10 C 0.04 -0.18 5.22 71.24 0.37 0.20 16 11 C 0.52 0.13 7.91 87.66 0.69 0.82 16 12 O -0.57 -7.13 16.12 16.00 0.26 -6.87 16 13 N -0.69 5.37 5.26 -440.04 -2.32 3.06 16 14 C 0.13 -0.66 4.29 45.52 0.20 -0.46 16 15 H 0.10 -0.02 7.50 -2.38 -0.02 -0.04 16 16 C -0.13 0.77 7.46 31.22 0.23 1.01 16 17 C -0.57 4.85 4.21 31.22 0.13 4.98 16 18 H 0.19 -3.04 8.14 -2.39 -0.02 -3.06 16 19 S 2.50 1.94 5.13 -56.49 -0.29 1.65 16 20 O -0.97 -7.02 17.13 -127.65 -2.19 -9.20 16 21 O -0.97 -7.33 16.30 -127.65 -2.08 -9.41 16 22 C -0.67 -0.40 5.66 22.27 0.13 -0.28 16 23 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 24 C -0.15 0.31 10.05 22.27 0.22 0.53 16 25 C -0.07 0.25 10.05 22.27 0.22 0.48 16 26 C -0.15 0.45 10.05 22.27 0.22 0.68 16 27 C -0.04 0.04 9.47 22.27 0.21 0.25 16 28 C -0.12 0.99 7.41 31.12 0.23 1.22 16 29 C -0.15 -1.11 9.62 22.36 0.22 -0.89 16 30 H 0.39 -1.36 8.74 -74.06 -0.65 -2.01 16 31 H 0.09 -0.14 7.96 -2.39 -0.02 -0.15 16 32 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 33 H -0.29 -1.23 7.05 99.48 0.70 -0.53 16 34 H 0.14 -0.55 4.86 -2.91 -0.01 -0.57 16 35 H 0.16 -1.65 8.06 -2.92 -0.02 -1.67 16 36 H 0.16 -1.77 6.30 -2.91 -0.02 -1.79 16 37 H 0.13 -1.57 7.67 -2.39 -0.02 -1.59 16 38 H 0.13 -1.40 7.65 -2.39 -0.02 -1.42 16 39 H 0.42 -6.85 8.70 -92.71 -0.81 -7.66 16 40 H 0.11 -0.51 7.43 -2.39 -0.02 -0.53 16 41 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.14 -0.20 7.56 -2.91 -0.02 -0.22 16 43 H 0.15 -0.93 8.06 -2.91 -0.02 -0.96 16 44 H 0.15 -1.34 8.06 -2.91 -0.02 -1.36 16 45 H 0.15 -1.22 8.06 -2.91 -0.02 -1.24 16 46 H 0.15 -0.54 7.57 -2.91 -0.02 -0.57 16 47 H 0.12 -1.60 8.14 -2.38 -0.02 -1.62 16 48 H 0.11 -0.88 8.10 -2.39 -0.02 -0.89 16 49 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -41.10 424.67 -3.44 -44.55 By element: Atomic # 1 Polarization: -27.06 SS G_CDS: -0.41 Total: -27.47 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.15 Total: 10.57 kcal Atomic # 7 Polarization: 5.37 SS G_CDS: -2.32 Total: 3.06 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -6.63 Total: -32.80 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: 2.05 Total: 0.45 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -0.29 Total: 1.65 kcal Total: -41.10 -3.44 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.521 kcal (2) G-P(sol) polarization free energy of solvation -41.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds