Wall clock time and date at job start Tue Mar 9 2021 13:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00066 * 2 1 4 4 C 1.38611 * 120.03046 * 180.02562 * 3 2 1 5 5 C 1.38657 * 119.89268 * 179.70386 * 4 3 2 6 6 O 1.35896 * 120.02894 * 180.27332 * 5 4 3 7 7 C 1.42904 * 117.00119 * 0.25103 * 6 5 4 8 8 C 1.50700 * 109.47347 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99453 * 0.02562 * 8 7 6 10 10 N 1.34768 * 119.99954 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99970 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84724 * 23.79792 * 11 10 8 13 13 C 1.53775 * 113.61703 * 154.99898 * 11 10 8 14 14 C 1.53790 * 87.08062 * 89.11618 * 13 11 10 15 15 H 1.08996 * 113.61453 * 270.88610 * 14 13 11 16 16 S 1.81399 * 113.61309 * 140.06533 * 14 13 11 17 17 O 1.42099 * 110.54223 * 296.62703 * 16 14 13 18 18 O 1.42099 * 110.54331 * 73.37676 * 16 14 13 19 19 C 1.76198 * 104.44770 * 184.99983 * 16 14 13 20 20 C 1.38235 * 120.00130 * 269.72853 * 19 16 14 21 21 C 1.38242 * 119.99909 * 179.76690 * 20 19 16 22 22 C 1.38227 * 119.99739 * 0.48588 * 21 20 19 23 23 C 1.38242 * 120.00542 * 359.78874 * 22 21 20 24 24 C 1.38232 * 119.99360 * 359.95928 * 23 22 21 25 25 C 1.53780 * 87.07905 * 25.43533 * 14 13 11 26 26 C 1.38753 * 119.94196 * 0.52654 * 5 4 3 27 27 C 1.50696 * 119.96964 * 179.74946 * 26 5 4 28 28 O 1.42903 * 109.47131 * 284.72136 * 27 26 5 29 29 Si 1.86305 * 109.47185 * 164.72677 * 27 26 5 30 30 C 1.38199 * 120.05255 * 359.47544 * 26 5 4 31 31 C 1.38148 * 120.11174 * 0.26970 * 30 26 5 32 32 H 1.08998 * 109.47043 * 299.99721 * 1 2 3 33 33 H 1.09000 * 109.47448 * 59.99789 * 1 2 3 34 34 H 1.09001 * 109.46732 * 180.02562 * 1 2 3 35 35 H 1.08006 * 120.04983 * 359.96299 * 4 3 2 36 36 H 1.09000 * 109.46918 * 300.00633 * 7 6 5 37 37 H 1.09003 * 109.46464 * 59.99841 * 7 6 5 38 38 H 0.96995 * 120.00434 * 0.02562 * 10 8 7 39 39 H 1.08997 * 113.61889 * 203.66450 * 13 11 10 40 40 H 1.09001 * 113.61623 * 334.48913 * 13 11 10 41 41 H 1.07999 * 119.99804 * 359.97438 * 20 19 16 42 42 H 1.07992 * 119.99886 * 180.24858 * 21 20 19 43 43 H 1.08006 * 120.00076 * 179.76999 * 22 21 20 44 44 H 1.08000 * 120.00072 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.99821 * 180.02562 * 24 23 22 46 46 H 1.09001 * 113.60946 * 220.01893 * 25 14 13 47 47 H 1.08989 * 113.61714 * 89.11644 * 25 14 13 48 48 H 1.08999 * 109.47358 * 44.72496 * 27 26 5 49 49 H 0.96700 * 114.00311 * 300.00591 * 28 27 26 50 50 H 1.48499 * 109.99670 * 58.67633 * 29 27 26 51 51 H 1.48497 * 110.00233 * 179.97438 * 29 27 26 52 52 H 1.07997 * 119.93856 * 180.29840 * 30 26 5 53 53 H 1.08003 * 119.97206 * 179.97438 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4301 1.2841 -0.0005 5 6 4.0566 2.5211 -0.0067 6 8 5.4135 2.5961 -0.0129 7 6 6.1316 1.3606 -0.0182 8 6 7.6124 1.6402 -0.0252 9 8 8.0133 2.7849 -0.0252 10 7 8.4911 0.6184 -0.0315 11 6 9.9307 0.8902 -0.0378 12 1 10.1780 1.8710 0.3684 13 6 10.7758 -0.2515 0.5513 14 6 10.8268 -0.8407 -0.8683 15 1 10.0008 -1.5161 -1.0907 16 16 12.4434 -1.5359 -1.3088 17 8 13.4369 -0.5201 -1.3191 18 8 12.6594 -2.7651 -0.6294 19 6 12.2768 -1.9981 -3.0009 20 6 11.8406 -3.2677 -3.3309 21 6 11.7054 -3.6287 -4.6585 22 6 12.0159 -2.7236 -5.6559 23 6 12.4575 -1.4558 -5.3260 24 6 12.5878 -1.0931 -3.9985 25 6 10.6083 0.5909 -1.3855 26 6 3.2970 3.6822 -0.0014 27 6 3.9773 5.0268 -0.0024 28 8 4.5040 5.2952 1.2987 29 14 2.7436 6.3467 -0.4573 30 6 1.9171 3.6065 -0.0008 31 6 1.2906 2.3753 0.0001 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 4.0196 0.3791 -0.0004 36 1 5.8740 0.7869 0.8721 37 1 5.8657 0.7897 -0.9079 38 1 8.1705 -0.2970 -0.0319 39 1 11.7472 0.0722 0.9249 40 1 10.2338 -0.8730 1.2641 41 1 11.6023 -3.9763 -2.5515 42 1 11.3607 -4.6192 -4.9162 43 1 11.9138 -3.0068 -6.6931 44 1 12.7006 -0.7488 -6.1054 45 1 12.9324 -0.1026 -3.7406 46 1 9.9306 0.6487 -2.2373 47 1 11.5338 1.1449 -1.5414 48 1 4.7895 5.0226 -0.7294 49 1 3.8357 5.3141 1.9973 50 1 1.6153 6.3415 0.5082 51 1 3.4020 7.6777 -0.4612 52 1 1.3277 4.5114 -0.0014 53 1 0.2120 2.3187 0.0010 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:23 Heat of formation + Delta-G solvation = -110.243352 kcal Electronic energy + Delta-G solvation = -39393.574997 eV Core-core repulsion = 34098.819594 eV Total energy + Delta-G solvation = -5294.755403 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 434.137 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.88127 -41.29520 -40.13871 -40.05427 -39.30413 -38.32405 -38.20908 -37.09402 -37.00061 -34.57608 -32.32837 -32.30266 -32.01709 -31.44079 -29.64595 -28.36164 -27.05803 -26.71732 -26.12837 -24.21155 -23.78608 -23.72330 -22.50273 -21.99435 -21.13161 -20.02178 -19.88253 -19.13793 -18.65796 -18.31701 -17.95169 -17.66858 -17.52588 -17.25553 -17.01043 -16.96438 -16.83500 -16.66445 -16.48390 -16.04261 -15.98820 -15.67009 -15.58859 -15.45129 -15.17475 -15.14195 -14.67115 -14.51410 -14.50544 -14.24464 -14.04562 -13.88525 -13.78099 -13.75391 -13.45053 -13.33698 -13.26416 -13.25457 -13.14129 -13.13520 -12.48172 -12.30368 -12.23711 -12.16497 -12.04225 -12.01931 -11.77606 -11.65664 -11.62756 -11.26532 -11.07023 -10.51208 -10.38460 -10.28219 -10.06130 -9.69978 -9.10285 -4.92831 -1.01605 -0.19419 0.20282 0.27957 0.30924 1.32172 1.36511 1.37935 1.55958 1.76360 1.96813 2.24260 2.41418 2.52901 2.57219 2.71568 2.88595 3.05729 3.34127 3.44569 3.50185 3.53667 3.72443 3.79443 3.80586 3.86558 3.93453 3.95314 4.04455 4.06816 4.08730 4.17229 4.34673 4.36826 4.39042 4.40734 4.42553 4.43238 4.46824 4.47360 4.53539 4.66433 4.68555 4.69409 4.79301 4.80462 4.85370 4.93700 5.02346 5.06636 5.23726 5.25722 5.28189 5.34916 5.37937 5.47349 5.84519 6.12391 6.34519 6.41287 6.57624 7.06798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.164 3.836 4 C -0.251 4.251 5 C 0.178 3.822 6 O -0.303 6.303 7 C 0.033 3.967 8 C 0.519 3.481 9 O -0.563 6.563 10 N -0.692 5.692 11 C 0.130 3.870 12 H 0.099 0.901 13 C -0.119 4.119 14 C -0.573 4.573 15 H 0.191 0.809 16 S 2.499 3.501 17 O -0.967 6.967 18 O -0.972 6.972 19 C -0.666 4.666 20 C -0.042 4.042 21 C -0.147 4.147 22 C -0.070 4.070 23 C -0.148 4.148 24 C -0.041 4.041 25 C -0.126 4.126 26 C -0.195 4.195 27 C -0.076 4.076 28 O -0.549 6.549 29 Si 0.779 3.221 30 C -0.042 4.042 31 C -0.238 4.238 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.155 0.845 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.423 0.577 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.381 0.619 50 H -0.264 1.264 51 H -0.309 1.309 52 H 0.155 0.845 53 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -6.090 -4.479 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.270 4.270 5 C 0.132 3.868 6 O -0.215 6.215 7 C -0.045 4.045 8 C 0.305 3.695 9 O -0.440 6.440 10 N -0.346 5.346 11 C 0.023 3.977 12 H 0.117 0.883 13 C -0.158 4.158 14 C -0.686 4.686 15 H 0.208 0.792 16 S 2.685 3.315 17 O -0.965 6.965 18 O -0.969 6.969 19 C -0.753 4.753 20 C -0.061 4.061 21 C -0.165 4.165 22 C -0.088 4.088 23 C -0.167 4.167 24 C -0.059 4.059 25 C -0.165 4.165 26 C -0.196 4.196 27 C -0.184 4.184 28 O -0.357 6.357 29 Si 0.683 3.317 30 C -0.059 4.059 31 C -0.257 4.257 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.173 0.827 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.262 0.738 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.163 0.837 46 H 0.121 0.879 47 H 0.131 0.869 48 H 0.117 0.883 49 H 0.230 0.770 50 H -0.190 1.190 51 H -0.237 1.237 52 H 0.172 0.828 53 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.588 -4.714 -4.061 10.605 hybrid contribution -0.259 -0.737 0.581 0.973 sum -8.847 -5.450 -3.479 10.958 Atomic orbital electron populations 1.23395 0.76046 1.05682 1.02660 1.86053 1.23706 1.26581 1.87930 1.18878 0.91715 0.84928 0.92682 1.20558 0.93347 0.97447 1.15658 1.18554 0.81706 0.93106 0.93456 1.86220 1.15477 1.31654 1.88129 1.22755 0.88285 0.86545 1.06867 1.20445 0.88456 0.85093 0.75513 1.90800 1.80621 1.23175 1.49376 1.45264 1.04746 1.09765 1.74870 1.21633 0.79677 0.99836 0.96539 0.88307 1.23221 1.02899 0.96902 0.92798 1.31663 1.20953 1.08657 1.07337 0.79172 1.05163 0.78170 0.73939 0.74213 1.93540 1.56008 1.60455 1.86472 1.93532 1.85531 1.44454 1.73398 1.30421 1.17642 1.03813 1.23453 1.21232 0.92574 0.93687 0.98560 1.21681 1.00938 1.01412 0.92485 1.21917 0.92695 0.92966 1.01224 1.21674 1.00489 0.97918 0.96634 1.21196 0.92763 0.98940 0.93048 1.23296 1.03541 0.90221 0.99458 1.19595 0.93475 0.93986 1.12583 1.25126 1.06227 0.99656 0.87373 1.86651 1.38542 1.93048 1.17445 0.94148 0.75476 0.73487 0.88597 1.20940 0.92071 0.98781 0.94132 1.21393 1.01594 0.91287 1.11393 0.91543 0.91118 0.86572 0.82740 0.86102 0.85547 0.73827 0.86981 0.85923 0.83305 0.82860 0.82818 0.83163 0.83709 0.87886 0.86926 0.88316 0.77019 1.18968 1.23735 0.82819 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.81 113.37 1.11 0.99 16 2 O -0.33 0.17 10.49 -92.44 -0.97 -0.80 16 3 C 0.16 0.06 6.68 22.49 0.15 0.21 16 4 C -0.25 -0.12 8.97 22.46 0.20 0.08 16 5 C 0.18 0.70 6.66 22.49 0.15 0.85 16 6 O -0.30 -1.92 8.99 -73.34 -0.66 -2.58 16 7 C 0.03 -0.10 5.22 71.24 0.37 0.28 16 8 C 0.52 0.86 7.91 87.66 0.69 1.55 16 9 O -0.56 -7.65 16.10 15.99 0.26 -7.39 16 10 N -0.69 4.36 5.26 -440.04 -2.32 2.05 16 11 C 0.13 -0.53 4.32 45.52 0.20 -0.33 16 12 H 0.10 0.09 7.46 -2.39 -0.02 0.07 16 13 C -0.12 0.87 7.42 31.12 0.23 1.10 16 14 C -0.57 4.33 4.19 31.12 0.13 4.46 16 15 H 0.19 -2.79 8.14 -2.39 -0.02 -2.81 16 16 S 2.50 3.51 5.09 -56.49 -0.29 3.22 16 17 O -0.97 -7.75 16.45 -127.65 -2.10 -9.85 16 18 O -0.97 -7.69 17.12 -127.65 -2.19 -9.88 16 19 C -0.67 -0.80 5.66 22.27 0.13 -0.68 16 20 C -0.04 0.01 9.47 22.27 0.21 0.22 16 21 C -0.15 0.36 10.05 22.27 0.22 0.58 16 22 C -0.07 0.22 10.05 22.27 0.22 0.44 16 23 C -0.15 0.24 10.05 22.27 0.22 0.46 16 24 C -0.04 -0.03 9.47 22.27 0.21 0.18 16 25 C -0.13 0.69 7.44 31.12 0.23 0.92 16 26 C -0.20 -0.62 5.27 -19.75 -0.10 -0.72 16 27 C -0.08 -0.39 2.38 71.23 0.17 -0.22 16 28 O -0.55 -4.98 12.88 -148.98 -1.92 -6.90 16 29 Si 0.78 0.08 30.24 68.60 2.07 2.15 16 30 C -0.04 0.05 8.65 22.24 0.19 0.24 16 31 C -0.24 0.47 9.04 22.38 0.20 0.67 16 32 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 33 H 0.07 -0.66 7.66 -2.39 -0.02 -0.68 16 34 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 35 H 0.16 -0.67 6.30 -2.91 -0.02 -0.69 16 36 H 0.12 -0.98 7.65 -2.39 -0.02 -1.00 16 37 H 0.13 -1.18 7.67 -2.39 -0.02 -1.20 16 38 H 0.42 -6.03 8.70 -92.71 -0.81 -6.84 16 39 H 0.11 -0.77 8.10 -2.39 -0.02 -0.79 16 40 H 0.12 -1.41 8.14 -2.39 -0.02 -1.43 16 41 H 0.15 -0.41 7.56 -2.91 -0.02 -0.44 16 42 H 0.15 -1.11 8.06 -2.91 -0.02 -1.13 16 43 H 0.15 -1.26 8.06 -2.91 -0.02 -1.28 16 44 H 0.15 -0.88 8.06 -2.91 -0.02 -0.90 16 45 H 0.15 -0.15 7.57 -2.91 -0.02 -0.18 16 46 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.11 -0.49 7.54 -2.39 -0.02 -0.51 16 48 H 0.10 0.79 7.82 -2.39 -0.02 0.77 16 49 H 0.38 0.65 8.70 -74.06 -0.64 0.01 16 50 H -0.26 -0.14 6.68 99.48 0.66 0.53 16 51 H -0.31 -2.68 7.11 99.48 0.71 -1.97 16 52 H 0.15 -0.77 4.85 -2.91 -0.01 -0.79 16 53 H 0.16 -1.08 6.29 -2.91 -0.02 -1.10 16 Total: 0.00 -40.16 453.40 -3.43 -43.59 By element: Atomic # 1 Polarization: -24.43 SS G_CDS: -0.47 Total: -24.90 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.15 Total: 11.30 kcal Atomic # 7 Polarization: 4.36 SS G_CDS: -2.32 Total: 2.05 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -7.58 Total: -37.41 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.07 Total: 2.15 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -0.29 Total: 3.22 kcal Total: -40.16 -3.43 -43.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.654 kcal (2) G-P(sol) polarization free energy of solvation -40.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds