Wall clock time and date at job start Tue Mar 9 2021 13:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99976 * 2 1 4 4 C 1.39452 * 120.11775 * 180.02562 * 3 2 1 5 5 O 1.34770 * 133.24571 * 359.95434 * 4 3 2 6 6 C 1.34931 * 110.84706 * 180.02562 * 5 4 3 7 7 C 1.46988 * 125.14136 * 179.97438 * 6 5 4 8 8 O 1.21654 * 119.99865 * 179.97438 * 7 6 5 9 9 N 1.34778 * 120.00346 * 359.97438 * 7 6 5 10 10 C 1.46494 * 119.99958 * 179.97438 * 9 7 6 11 11 H 1.08991 * 112.85238 * 23.80236 * 10 9 7 12 12 C 1.53788 * 113.61175 * 154.99989 * 10 9 7 13 13 C 1.53783 * 87.07985 * 89.11669 * 12 10 9 14 14 H 1.08998 * 113.61049 * 270.79854 * 13 12 10 15 15 S 1.81405 * 113.61317 * 139.98231 * 13 12 10 16 16 O 1.42096 * 110.54397 * 296.61917 * 15 13 12 17 17 O 1.42098 * 110.54257 * 73.37414 * 15 13 12 18 18 C 1.76202 * 104.44817 * 184.99627 * 15 13 12 19 19 C 1.38235 * 119.99912 * 269.72628 * 18 15 13 20 20 C 1.38233 * 119.99792 * 179.76488 * 19 18 15 21 21 C 1.38235 * 119.99945 * 0.48863 * 20 19 18 22 22 C 1.38232 * 120.00165 * 359.78437 * 21 20 19 23 23 C 1.38238 * 119.99638 * 89.99911 * 18 15 13 24 24 C 1.53777 * 87.08460 * 25.43392 * 13 12 10 25 25 C 1.35807 * 109.71673 * 359.97438 * 6 5 4 26 26 C 1.40615 * 119.13643 * 179.97438 * 4 3 2 27 27 C 1.39781 * 120.11736 * 359.97438 * 26 4 3 28 28 C 1.50693 * 120.09111 * 180.02562 * 27 26 4 29 29 O 1.42898 * 109.47353 * 284.99641 * 28 27 26 30 30 Si 1.86305 * 109.46993 * 164.99797 * 28 27 26 31 31 C 1.36631 * 119.81451 * 359.97438 * 27 26 4 32 32 C 1.38254 * 120.12291 * 359.72489 * 3 2 1 33 33 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46938 * 59.99679 * 1 2 3 35 35 H 1.09004 * 109.46926 * 299.99800 * 1 2 3 36 36 H 0.97002 * 119.99628 * 359.97438 * 9 7 6 37 37 H 1.09000 * 113.60929 * 203.66038 * 12 10 9 38 38 H 1.08997 * 113.61291 * 334.48421 * 12 10 9 39 39 H 1.08000 * 119.99926 * 0.02562 * 19 18 15 40 40 H 1.07998 * 120.00064 * 180.25104 * 20 19 18 41 41 H 1.08001 * 120.00455 * 179.76758 * 21 20 19 42 42 H 1.08004 * 120.00372 * 179.97438 * 22 21 20 43 43 H 1.07989 * 120.00209 * 0.02562 * 23 18 15 44 44 H 1.09002 * 113.61348 * 220.02237 * 24 13 12 45 45 H 1.08998 * 113.61918 * 89.11843 * 24 13 12 46 46 H 1.08005 * 126.95780 * 180.02562 * 25 6 5 47 47 H 1.09003 * 109.47609 * 44.99988 * 28 27 26 48 48 H 0.96696 * 114.00115 * 300.00238 * 29 28 27 49 49 H 1.48492 * 109.99748 * 58.68060 * 30 28 27 50 50 H 1.48502 * 109.99956 * 180.02562 * 30 28 27 51 51 H 1.07990 * 119.75288 * 180.02562 * 31 27 26 52 52 H 1.08003 * 119.66146 * 0.02675 * 32 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3572 -0.0003 6 6 5.6318 0.9385 -0.0005 7 6 6.9131 0.2182 0.0001 8 8 7.9596 0.8386 -0.0006 9 7 6.9287 -1.1295 0.0016 10 6 8.2057 -1.8472 0.0017 11 1 9.0252 -1.2531 0.4059 12 6 8.1173 -3.2617 0.5987 13 6 7.7799 -3.7537 -0.8187 14 1 6.7133 -3.7422 -1.0424 15 16 8.5732 -5.3272 -1.2496 16 8 9.9872 -5.1867 -1.2589 17 8 7.9485 -6.4045 -0.5652 18 6 8.1509 -5.5838 -2.9409 19 6 7.0017 -6.2786 -3.2686 20 6 6.6679 -6.4756 -4.5955 21 6 7.4885 -5.9866 -5.5946 22 6 8.6407 -5.2967 -5.2669 23 6 8.9718 -5.0950 -3.9400 24 6 8.5344 -2.5200 -1.3416 25 6 5.4946 2.2896 -0.0015 26 6 4.0555 2.5509 -0.0011 27 6 3.2767 3.7116 -0.0016 28 6 3.9383 5.0655 -0.0028 29 8 4.4611 5.3413 1.2982 30 14 2.6864 6.3680 -0.4579 31 6 1.9138 3.6151 -0.0021 32 6 1.2958 2.3725 -0.0057 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 0.5138 0.8900 36 1 6.0942 -1.6241 0.0025 37 1 9.0687 -3.6365 0.9761 38 1 7.3013 -3.3848 1.3108 39 1 6.3624 -6.6638 -2.4880 40 1 5.7679 -7.0149 -4.8516 41 1 7.2297 -6.1438 -6.6313 42 1 9.2821 -4.9150 -6.0475 43 1 9.8721 -4.5564 -3.6840 44 1 8.0542 -2.0447 -2.1970 45 1 9.5998 -2.6921 -1.4947 46 1 6.2876 3.0229 -0.0022 47 1 4.7505 5.0725 -0.7297 48 1 3.7926 5.3510 1.9968 49 1 1.5583 6.3474 0.5074 50 1 3.3267 7.7079 -0.4632 51 1 1.3130 4.5124 -0.0030 52 1 0.2175 2.3119 -0.0098 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:59 Heat of formation + Delta-G solvation = -66.815071 kcal Electronic energy + Delta-G solvation = -40872.451768 eV Core-core repulsion = 35478.664895 eV Total energy + Delta-G solvation = -5393.786874 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 444.121 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.78710 -41.45980 -40.62489 -40.06421 -39.45902 -39.13471 -38.25013 -37.12465 -37.10769 -34.67651 -33.68221 -32.33575 -32.02552 -31.94701 -31.04185 -28.64916 -27.29847 -27.06294 -26.28484 -24.97247 -24.14617 -24.03079 -23.73995 -22.21544 -21.80994 -21.16886 -20.01031 -19.92924 -19.17118 -18.97308 -18.58715 -18.06767 -17.88142 -17.78804 -17.20143 -17.05711 -16.97402 -16.95987 -16.60870 -16.22597 -16.15976 -15.91275 -15.83473 -15.70985 -15.53935 -15.18601 -14.74186 -14.59741 -14.57141 -14.52134 -14.33211 -14.17064 -14.06607 -13.88945 -13.79248 -13.50154 -13.42814 -13.28259 -13.26825 -13.26452 -13.15374 -12.48632 -12.27849 -12.24558 -12.23249 -12.13245 -12.08940 -11.79700 -11.70072 -11.67044 -11.26754 -11.04515 -10.61609 -10.45471 -10.37568 -10.06895 -9.86086 -9.02921 -4.89381 -1.03322 -0.70569 -0.20167 0.07850 0.27264 0.57925 1.12625 1.29884 1.59236 1.72081 1.79877 1.82890 1.98044 2.12054 2.37458 2.40281 2.70078 2.85661 3.02210 3.12775 3.32020 3.37135 3.45546 3.53489 3.64393 3.77038 3.79226 3.84337 3.85484 3.92579 3.95605 4.07911 4.15262 4.31892 4.35938 4.36831 4.39738 4.41453 4.42982 4.45748 4.48496 4.49572 4.62130 4.68601 4.76141 4.77508 4.79698 4.81750 4.85309 4.92877 5.03152 5.05673 5.17461 5.21718 5.24822 5.34021 5.36980 5.55561 5.83809 6.13068 6.25823 6.49556 6.74624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.138 3.862 4 C 0.023 3.977 5 O -0.180 6.180 6 C -0.034 4.034 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.687 5.687 10 C 0.127 3.873 11 H 0.115 0.885 12 C -0.119 4.119 13 C -0.581 4.581 14 H 0.182 0.818 15 S 2.503 3.497 16 O -0.962 6.962 17 O -0.972 6.972 18 C -0.667 4.667 19 C -0.044 4.044 20 C -0.147 4.147 21 C -0.070 4.070 22 C -0.148 4.148 23 C -0.039 4.039 24 C -0.123 4.123 25 C -0.110 4.110 26 C -0.096 4.096 27 C -0.099 4.099 28 C -0.089 4.089 29 O -0.548 6.548 30 Si 0.780 3.220 31 C -0.089 4.089 32 C -0.165 4.165 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.419 0.581 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.101 0.899 45 H 0.123 0.877 46 H 0.172 0.828 47 H 0.116 0.884 48 H 0.386 0.614 49 H -0.263 1.263 50 H -0.306 1.306 51 H 0.165 0.835 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 2.009 -4.556 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.092 3.908 4 C -0.025 4.025 5 O -0.082 6.082 6 C -0.084 4.084 7 C 0.394 3.606 8 O -0.417 6.417 9 N -0.338 5.338 10 C 0.021 3.979 11 H 0.133 0.867 12 C -0.158 4.158 13 C -0.693 4.693 14 H 0.199 0.801 15 S 2.689 3.311 16 O -0.960 6.960 17 O -0.969 6.969 18 C -0.755 4.755 19 C -0.062 4.062 20 C -0.166 4.166 21 C -0.088 4.088 22 C -0.167 4.167 23 C -0.058 4.058 24 C -0.163 4.163 25 C -0.131 4.131 26 C -0.097 4.097 27 C -0.100 4.100 28 C -0.196 4.196 29 O -0.356 6.356 30 Si 0.684 3.316 31 C -0.107 4.107 32 C -0.184 4.184 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.257 0.743 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.120 0.880 45 H 0.141 0.859 46 H 0.190 0.810 47 H 0.134 0.866 48 H 0.236 0.764 49 H -0.189 1.189 50 H -0.234 1.234 51 H 0.182 0.818 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.087 2.049 -4.128 10.189 hybrid contribution -0.543 -0.213 0.606 0.841 sum -9.630 1.836 -3.522 10.417 Atomic orbital electron populations 1.23484 0.75339 1.06008 1.03144 1.86142 1.24274 1.25802 1.88428 1.17974 0.86131 0.86822 0.99917 1.19184 0.88195 0.87101 1.08058 1.84004 1.12659 1.34988 1.76532 1.21870 0.83974 0.92666 1.09903 1.16597 0.85023 0.82551 0.76392 1.90913 1.31282 1.68148 1.51317 1.45456 1.10424 1.04843 1.73073 1.21812 0.86507 0.92596 0.97030 0.86693 1.23238 1.05949 0.93956 0.92696 1.31686 1.14610 1.15440 1.07551 0.80069 1.05056 0.74754 0.77116 0.74184 1.93541 1.28607 1.87355 1.86452 1.93531 1.78233 1.51922 1.73258 1.30428 1.06773 1.14758 1.23505 1.21223 0.93689 0.92750 0.98583 1.21676 1.01452 1.00998 0.92477 1.21922 0.92973 0.92705 1.01183 1.21689 0.98265 1.00009 0.96691 1.21222 0.97205 0.94433 0.92965 1.23319 1.02086 0.91720 0.99148 1.22867 0.95375 0.94464 1.00346 1.19572 0.92361 0.92770 1.05025 1.19545 0.93449 0.93893 1.03130 1.25367 1.07693 0.98594 0.87973 1.86607 1.38948 1.92768 1.17262 0.93908 0.75423 0.73542 0.88734 1.20884 0.92959 0.98817 0.97992 1.21372 1.01809 0.89618 1.05599 0.86652 0.90463 0.90888 0.74296 0.86085 0.86528 0.83538 0.82937 0.82752 0.82973 0.83393 0.88049 0.85924 0.81010 0.86621 0.76440 1.18882 1.23389 0.81837 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.30 10.50 -93.10 -0.98 -1.28 16 3 C 0.14 0.20 6.70 22.57 0.15 0.35 16 4 C 0.02 0.12 7.35 23.14 0.17 0.29 16 5 O -0.18 -1.06 10.28 -13.38 -0.14 -1.20 16 6 C -0.03 -0.20 7.07 24.00 0.17 -0.03 16 7 C 0.61 3.26 7.80 86.54 0.67 3.94 16 8 O -0.54 -6.15 16.42 -4.20 -0.07 -6.22 16 9 N -0.69 0.85 5.26 -443.71 -2.33 -1.48 16 10 C 0.13 -0.36 4.33 45.52 0.20 -0.16 16 11 H 0.12 -0.08 7.46 -2.39 -0.02 -0.09 16 12 C -0.12 0.67 7.42 31.12 0.23 0.91 16 13 C -0.58 3.11 4.19 31.12 0.13 3.24 16 14 H 0.18 -1.90 8.14 -2.39 -0.02 -1.92 16 15 S 2.50 6.01 5.09 -56.49 -0.29 5.72 16 16 O -0.96 -7.65 16.44 -127.65 -2.10 -9.75 16 17 O -0.97 -8.90 17.12 -127.65 -2.19 -11.09 16 18 C -0.67 -1.53 5.66 22.27 0.13 -1.40 16 19 C -0.04 -0.06 9.47 22.27 0.21 0.15 16 20 C -0.15 0.18 10.05 22.27 0.22 0.40 16 21 C -0.07 0.16 10.05 22.27 0.22 0.38 16 22 C -0.15 0.17 10.05 22.27 0.22 0.39 16 23 C -0.04 -0.05 9.47 22.27 0.21 0.16 16 24 C -0.12 0.57 7.44 31.12 0.23 0.80 16 25 C -0.11 -0.68 10.68 23.79 0.25 -0.43 16 26 C -0.10 -0.44 6.16 -20.24 -0.12 -0.57 16 27 C -0.10 0.00 5.26 -19.87 -0.10 -0.10 16 28 C -0.09 0.08 2.70 71.23 0.19 0.27 16 29 O -0.55 -1.46 12.88 -148.98 -1.92 -3.37 16 30 Si 0.78 -3.58 30.25 68.60 2.08 -1.50 16 31 C -0.09 0.39 8.62 22.02 0.19 0.58 16 32 C -0.17 0.72 9.03 22.40 0.20 0.92 16 33 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 34 H 0.08 -0.88 7.65 -2.39 -0.02 -0.89 16 35 H 0.07 -0.78 7.67 -2.38 -0.02 -0.80 16 36 H 0.42 -2.12 8.42 -92.71 -0.78 -2.90 16 37 H 0.12 -0.82 8.10 -2.39 -0.02 -0.84 16 38 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.15 -0.13 7.57 -2.91 -0.02 -0.15 16 40 H 0.15 -0.90 8.06 -2.91 -0.02 -0.93 16 41 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 42 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 43 H 0.15 -0.17 7.57 -2.92 -0.02 -0.20 16 44 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.12 -0.63 7.53 -2.39 -0.02 -0.65 16 46 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.12 -0.10 7.96 -2.39 -0.02 -0.12 16 48 H 0.39 -1.42 8.70 -74.06 -0.64 -2.07 16 49 H -0.26 0.96 6.69 99.48 0.67 1.63 16 50 H -0.31 -1.24 7.11 99.48 0.71 -0.53 16 51 H 0.16 -1.53 4.81 -2.92 -0.01 -1.54 16 52 H 0.18 -1.99 6.26 -2.91 -0.02 -2.01 16 Total: 0.00 -33.55 451.83 -3.45 -37.00 By element: Atomic # 1 Polarization: -17.52 SS G_CDS: -0.41 Total: -17.93 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.90 Total: 11.10 kcal Atomic # 7 Polarization: 0.85 SS G_CDS: -2.33 Total: -1.48 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -7.39 Total: -32.91 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.08 Total: -1.50 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -0.29 Total: 5.72 kcal Total: -33.55 -3.45 -37.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.817 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds