Wall clock time and date at job start Tue Mar 9 2021 13:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.34233 * 126.50142 * 105.02153 * 4 2 1 6 6 N 1.36835 * 109.93876 * 179.97438 * 5 4 2 7 7 C 1.46498 * 125.06135 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47038 * 264.97925 * 7 6 5 9 9 O 1.21282 * 120.00466 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00221 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00488 * 179.97438 * 10 8 7 12 12 H 1.08995 * 112.84983 * 336.19281 * 11 10 8 13 13 C 1.53777 * 113.61585 * 107.50065 * 11 10 8 14 14 C 1.53786 * 87.08046 * 89.11788 * 13 11 10 15 15 H 1.08993 * 113.68987 * 270.87153 * 14 13 11 16 16 S 1.81408 * 113.61239 * 139.98138 * 14 13 11 17 17 O 1.42095 * 110.53979 * 194.12417 * 16 14 13 18 18 O 1.42099 * 110.54121 * 330.88056 * 16 14 13 19 19 C 1.76207 * 104.44772 * 82.50293 * 16 14 13 20 20 C 1.38229 * 120.00055 * 269.72349 * 19 16 14 21 21 C 1.38235 * 120.00349 * 179.79012 * 20 19 16 22 22 C 1.38236 * 119.99285 * 0.46059 * 21 20 19 23 23 C 1.38233 * 120.00385 * 359.77117 * 22 21 20 24 24 C 1.38236 * 119.99587 * 90.00041 * 19 16 14 25 25 C 1.53781 * 113.61605 * 205.00215 * 11 10 8 26 26 C 1.37693 * 109.87527 * 0.02562 * 6 5 4 27 27 C 1.39081 * 133.51369 * 180.02562 * 26 6 5 28 28 C 1.37793 * 119.77500 * 179.30903 * 27 26 6 29 29 C 1.38789 * 120.66575 * 0.55149 * 28 27 26 30 30 C 1.36654 * 120.52882 * 359.64543 * 29 28 27 31 31 C 1.39590 * 119.76854 * 359.97438 * 30 29 28 32 32 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 33 33 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 34 34 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 35 35 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 36 36 H 1.08001 * 125.02965 * 0.02562 * 5 4 2 37 37 H 1.08992 * 109.47366 * 24.97712 * 7 6 5 38 38 H 1.09004 * 109.46960 * 144.97895 * 7 6 5 39 39 H 0.97006 * 119.99516 * 0.02562 * 10 8 7 40 40 H 1.09003 * 113.61618 * 203.66861 * 13 11 10 41 41 H 1.09001 * 113.61395 * 334.57272 * 13 11 10 42 42 H 1.08006 * 119.99844 * 0.02562 * 20 19 16 43 43 H 1.07987 * 120.00648 * 180.25728 * 21 20 19 44 44 H 1.08003 * 119.99816 * 179.79106 * 22 21 20 45 45 H 1.08005 * 119.99847 * 179.97438 * 23 22 21 46 46 H 1.07992 * 120.00533 * 359.97359 * 24 19 16 47 47 H 1.08997 * 113.61490 * 25.42662 * 25 11 10 48 48 H 1.08997 * 113.61664 * 156.33784 * 25 11 10 49 49 H 1.08002 * 120.11063 * 359.97438 * 27 26 6 50 50 H 1.08004 * 119.66484 * 180.19761 * 28 27 26 51 51 H 1.07997 * 119.73458 * 179.61588 * 29 28 27 52 52 H 1.08005 * 120.12148 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4611 -0.1377 -2.3228 6 7 2.8035 -1.0991 -3.2343 7 6 3.4093 -0.8405 -4.5429 8 6 2.3303 -0.7843 -5.5935 9 8 1.1697 -0.9449 -5.2802 10 7 2.6552 -0.5565 -6.8816 11 6 1.6065 -0.5024 -7.9030 12 1 0.7065 -1.0455 -7.6148 13 6 1.3305 0.9164 -8.4280 14 6 2.4183 0.6528 -9.4827 15 1 3.4210 0.9281 -9.1559 16 16 2.0096 1.3030 -11.1262 17 8 2.8784 0.7562 -12.1088 18 8 0.6020 1.3192 -11.3201 19 6 2.4573 3.0055 -11.0493 20 6 1.5298 3.9464 -10.6429 21 6 1.8823 5.2815 -10.5784 22 6 3.1595 5.6767 -10.9294 23 6 4.0857 4.7364 -11.3403 24 6 3.7345 3.4008 -11.4008 25 6 2.1055 -0.8438 -9.3170 26 6 2.4940 -2.3458 -2.7383 27 6 2.6295 -3.6363 -3.2390 28 6 2.2279 -4.7116 -2.4767 29 6 1.6781 -4.5203 -1.2168 30 6 1.5321 -3.2608 -0.7072 31 6 1.9394 -2.1574 -1.4589 32 1 -0.3932 0.4418 0.7651 33 1 1.7924 -0.5139 0.8900 34 1 1.5615 2.4679 -1.2085 35 1 1.5881 2.4585 1.2242 36 1 2.5978 0.9247 -2.4613 37 1 3.9400 0.1110 -4.5159 38 1 4.1095 -1.6405 -4.7835 39 1 3.5836 -0.4292 -7.1323 40 1 0.3333 1.0394 -8.8505 41 1 1.5910 1.7025 -7.7193 42 1 0.5308 3.6379 -10.3722 43 1 1.1589 6.0160 -10.2570 44 1 3.4340 6.7202 -10.8822 45 1 5.0835 5.0454 -11.6149 46 1 4.4579 2.6662 -11.7221 47 1 2.9915 -1.4785 -9.3259 48 1 1.3202 -1.2019 -9.9826 49 1 3.0579 -3.7956 -4.2175 50 1 2.3369 -5.7132 -2.8660 51 1 1.3628 -5.3736 -0.6348 52 1 1.1030 -3.1194 0.2739 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:28 Heat of formation + Delta-G solvation = 1.072088 kcal Electronic energy + Delta-G solvation = -38200.104951 eV Core-core repulsion = 33225.662740 eV Total energy + Delta-G solvation = -4974.442211 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.133 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.53220 -41.26410 -40.07015 -39.45184 -38.25691 -38.07984 -37.69023 -37.10379 -34.64442 -34.02953 -32.33805 -32.02957 -31.43844 -30.27528 -29.15308 -27.08496 -26.93717 -25.56592 -24.20066 -23.76844 -23.73771 -22.84182 -21.83583 -21.12885 -20.52290 -19.93408 -19.20902 -18.67185 -18.48756 -18.15126 -17.85144 -17.65819 -17.05482 -16.98085 -16.86292 -16.43476 -16.33198 -15.96688 -15.81919 -15.67411 -15.54618 -15.21458 -14.89315 -14.85592 -14.74126 -14.52543 -14.43164 -14.24451 -14.11992 -14.05115 -13.92850 -13.79692 -13.52003 -13.29309 -13.26810 -13.20374 -13.14464 -12.72387 -12.56329 -12.51228 -12.24934 -12.17764 -12.09689 -12.03458 -11.79460 -11.71254 -11.28956 -11.17474 -10.54109 -10.39527 -10.34502 -10.26332 -10.07487 -9.14849 -8.62475 -4.90801 -1.02586 -0.20737 0.14867 0.26617 0.64718 1.31452 1.38001 1.40315 1.61841 1.71874 1.75897 1.97768 2.11202 2.40451 2.67998 2.87598 2.94567 3.05127 3.34474 3.46586 3.56222 3.58241 3.71059 3.78814 3.80695 3.85218 3.85706 3.92261 4.03277 4.07674 4.16326 4.24115 4.29075 4.35633 4.38081 4.41013 4.41749 4.45061 4.52174 4.58175 4.67896 4.68194 4.72034 4.78084 4.80092 4.84555 4.91580 4.92423 5.05496 5.15450 5.24629 5.36630 5.36821 5.52313 5.67188 5.73869 5.76300 5.83274 6.17689 6.24334 6.44416 6.67685 7.10453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.059 4.059 3 Si 0.782 3.218 4 C -0.182 4.182 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.088 3.912 8 C 0.493 3.507 9 O -0.570 6.570 10 N -0.692 5.692 11 C 0.131 3.869 12 H 0.093 0.907 13 C -0.127 4.127 14 C -0.570 4.570 15 H 0.194 0.806 16 S 2.497 3.503 17 O -0.971 6.971 18 O -0.970 6.970 19 C -0.665 4.665 20 C -0.042 4.042 21 C -0.149 4.149 22 C -0.070 4.070 23 C -0.146 4.146 24 C -0.041 4.041 25 C -0.118 4.118 26 C 0.091 3.909 27 C -0.133 4.133 28 C -0.107 4.107 29 C -0.153 4.153 30 C -0.088 4.088 31 C -0.118 4.118 32 H 0.389 0.611 33 H 0.078 0.922 34 H -0.289 1.289 35 H -0.287 1.287 36 H 0.194 0.806 37 H 0.168 0.832 38 H 0.151 0.849 39 H 0.424 0.576 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.125 0.875 48 H 0.107 0.893 49 H 0.136 0.864 50 H 0.146 0.854 51 H 0.137 0.863 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 3.842 2.016 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.167 4.167 3 Si 0.686 3.314 4 C -0.189 4.189 5 C -0.051 4.051 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.279 3.721 9 O -0.448 6.448 10 N -0.346 5.346 11 C 0.023 3.977 12 H 0.111 0.889 13 C -0.167 4.167 14 C -0.683 4.683 15 H 0.211 0.789 16 S 2.683 3.317 17 O -0.968 6.968 18 O -0.967 6.967 19 C -0.753 4.753 20 C -0.061 4.061 21 C -0.168 4.168 22 C -0.088 4.088 23 C -0.164 4.164 24 C -0.059 4.059 25 C -0.157 4.157 26 C -0.014 4.014 27 C -0.153 4.153 28 C -0.127 4.127 29 C -0.172 4.172 30 C -0.107 4.107 31 C -0.122 4.122 32 H 0.239 0.761 33 H 0.096 0.904 34 H -0.216 1.216 35 H -0.214 1.214 36 H 0.211 0.789 37 H 0.185 0.815 38 H 0.168 0.832 39 H 0.263 0.737 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.143 0.857 48 H 0.125 0.875 49 H 0.154 0.846 50 H 0.164 0.836 51 H 0.155 0.845 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.668 3.910 0.631 10.448 hybrid contribution -1.091 0.459 0.719 1.385 sum 8.577 4.370 1.349 9.720 Atomic orbital electron populations 1.86627 1.19648 1.80636 1.50531 1.24488 0.83110 1.12066 0.96989 0.94270 0.89607 0.70677 0.76872 1.19756 1.09696 0.91493 0.97975 1.21914 1.00013 0.94920 0.88283 1.43389 1.53437 1.03728 1.14333 1.22036 0.93590 1.09623 0.78422 1.21567 0.90561 0.75590 0.84386 1.90837 1.22532 1.49771 1.81628 1.45405 1.11264 1.72446 1.05488 1.21575 0.92203 0.96568 0.87346 0.88930 1.23286 0.97512 0.99579 0.96319 1.31644 1.11812 1.07739 1.17085 0.78896 1.05215 0.73790 0.74519 0.78141 1.93534 1.67845 1.78204 1.57215 1.93540 1.31057 1.86494 1.85615 1.30421 1.03424 1.23965 1.17480 1.21178 0.98458 0.93613 0.92812 1.21660 0.97877 0.96183 1.01048 1.21916 0.92917 1.01324 0.92620 1.21692 1.01519 0.92799 1.00414 1.21240 0.93959 0.98161 0.92586 1.23199 1.04789 0.91336 0.96406 1.18407 1.01868 0.87058 0.94044 1.20261 1.05044 0.88924 1.01064 1.21148 0.98214 0.99064 0.94227 1.20921 1.02252 0.96984 0.97081 1.20442 0.98957 0.91643 0.99618 1.19369 1.03963 0.93708 0.95191 0.76133 0.90389 1.21625 1.21413 0.78925 0.81498 0.83165 0.73670 0.87425 0.87935 0.83932 0.83300 0.82819 0.82760 0.83163 0.85693 0.87467 0.84627 0.83606 0.84513 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -4.46 12.86 -148.98 -1.92 -6.37 16 2 C -0.06 -0.22 3.05 71.24 0.22 0.00 16 3 Si 0.78 -1.28 30.79 68.60 2.11 0.83 16 4 C -0.18 -1.32 5.61 -18.63 -0.10 -1.43 16 5 C 0.07 0.20 9.89 83.00 0.82 1.02 16 6 N -0.47 -0.79 2.27 -520.00 -1.18 -1.97 16 7 C 0.09 -0.75 6.48 85.63 0.56 -0.19 16 8 C 0.49 -1.14 7.90 87.66 0.69 -0.45 16 9 O -0.57 -6.16 16.02 -3.04 -0.05 -6.21 16 10 N -0.69 6.48 5.26 -440.06 -2.32 4.17 16 11 C 0.13 -0.71 4.32 45.52 0.20 -0.52 16 12 H 0.09 0.04 7.46 -2.39 -0.02 0.02 16 13 C -0.13 0.79 7.44 31.12 0.23 1.02 16 14 C -0.57 5.01 4.20 31.12 0.13 5.14 16 15 H 0.19 -3.18 8.14 -2.39 -0.02 -3.20 16 16 S 2.50 1.73 5.13 -56.49 -0.29 1.44 16 17 O -0.97 -6.86 17.13 -127.65 -2.19 -9.05 16 18 O -0.97 -7.55 16.30 -127.65 -2.08 -9.63 16 19 C -0.67 -0.29 5.66 22.27 0.13 -0.16 16 20 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 21 C -0.15 0.31 10.05 22.27 0.22 0.53 16 22 C -0.07 0.26 10.05 22.27 0.22 0.49 16 23 C -0.15 0.49 10.05 22.27 0.22 0.72 16 24 C -0.04 0.05 9.47 22.27 0.21 0.26 16 25 C -0.12 1.00 7.42 31.12 0.23 1.24 16 26 C 0.09 0.66 6.80 39.03 0.27 0.93 16 27 C -0.13 -0.61 10.00 22.37 0.22 -0.39 16 28 C -0.11 -0.47 10.01 22.30 0.22 -0.25 16 29 C -0.15 -0.95 9.97 22.03 0.22 -0.73 16 30 C -0.09 -0.82 10.05 22.23 0.22 -0.60 16 31 C -0.12 -1.23 6.35 -20.20 -0.13 -1.36 16 32 H 0.39 -0.39 8.74 -74.05 -0.65 -1.04 16 33 H 0.08 0.09 7.96 -2.38 -0.02 0.07 16 34 H -0.29 -1.10 7.04 99.48 0.70 -0.40 16 35 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 36 H 0.19 -0.71 6.30 -2.91 -0.02 -0.73 16 37 H 0.17 -2.89 8.12 -2.39 -0.02 -2.91 16 38 H 0.15 -2.18 8.14 -2.39 -0.02 -2.20 16 39 H 0.42 -7.54 8.70 -92.70 -0.81 -8.35 16 40 H 0.11 -0.43 7.43 -2.39 -0.02 -0.44 16 41 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.14 -0.16 7.57 -2.91 -0.02 -0.18 16 43 H 0.15 -0.91 8.06 -2.92 -0.02 -0.93 16 44 H 0.15 -1.36 8.06 -2.91 -0.02 -1.38 16 45 H 0.15 -1.27 8.06 -2.91 -0.02 -1.29 16 46 H 0.15 -0.60 7.57 -2.91 -0.02 -0.62 16 47 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 48 H 0.11 -0.80 8.10 -2.39 -0.02 -0.82 16 49 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 50 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 51 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 52 H 0.12 0.91 8.06 -2.91 -0.02 0.89 16 Total: 0.00 -44.29 451.05 -3.13 -47.42 By element: Atomic # 1 Polarization: -25.64 SS G_CDS: -0.44 Total: -26.09 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.22 Total: 5.47 kcal Atomic # 7 Polarization: 5.69 SS G_CDS: -3.50 Total: 2.19 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -6.23 Total: -31.26 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: 2.11 Total: 0.83 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -0.29 Total: 1.44 kcal Total: -44.29 -3.13 -47.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.491 kcal (2) G-P(sol) polarization free energy of solvation -44.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds