Wall clock time and date at job start Tue Mar 9 2021 13:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46801 * 2 1 4 4 C 1.52999 * 109.47459 * 240.00044 * 2 1 3 5 5 O 1.45200 * 109.47304 * 119.99768 * 2 1 3 6 6 C 1.34228 * 116.99901 * 59.99993 * 5 2 1 7 7 O 1.20820 * 119.99932 * 0.02562 * 6 5 2 8 8 C 1.50701 * 120.00001 * 179.97438 * 6 5 2 9 9 H 1.09004 * 112.84584 * 48.80491 * 8 6 5 10 10 C 1.53774 * 113.61709 * 180.02562 * 8 6 5 11 11 C 1.53771 * 87.08438 * 140.06715 * 10 8 6 12 12 H 1.08997 * 113.61855 * 89.19938 * 11 10 8 13 13 N 1.46505 * 113.61754 * 220.02256 * 11 10 8 14 14 C 1.34775 * 120.00247 * 203.46986 * 13 11 10 15 15 O 1.21280 * 119.99868 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00023 * 179.97438 * 14 13 11 17 17 N 1.46504 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.36840 * 125.05709 * 265.29812 * 17 16 14 19 19 C 1.34231 * 109.93308 * 180.12165 * 18 17 16 20 20 C 1.50707 * 126.49675 * 179.89681 * 19 18 17 21 21 O 1.42903 * 109.46442 * 254.68647 * 20 19 18 22 22 Si 1.86293 * 109.47256 * 14.68214 * 20 19 18 23 23 C 1.46487 * 107.00314 * 359.62802 * 19 18 17 24 24 C 1.39587 * 134.03261 * 180.18435 * 23 19 18 25 25 C 1.36665 * 119.76404 * 180.02562 * 24 23 19 26 26 C 1.38785 * 120.52286 * 359.97438 * 25 24 23 27 27 C 1.37789 * 120.67120 * 0.02726 * 26 25 24 28 28 C 1.37684 * 125.06605 * 84.99862 * 17 16 14 29 29 C 1.53786 * 87.17259 * 334.60926 * 11 10 8 30 30 H 1.09001 * 109.46925 * 299.99886 * 1 2 3 31 31 H 1.08999 * 109.47197 * 60.00140 * 1 2 3 32 32 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47018 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47131 * 299.99901 * 3 2 1 35 35 H 1.08992 * 109.47311 * 60.00040 * 3 2 1 36 36 H 1.09000 * 109.46835 * 300.00007 * 4 2 1 37 37 H 1.08999 * 109.47066 * 59.99736 * 4 2 1 38 38 H 1.08998 * 109.47546 * 179.97438 * 4 2 1 39 39 H 1.09004 * 113.61351 * 25.51623 * 10 8 6 40 40 H 1.09006 * 113.69327 * 254.63104 * 10 8 6 41 41 H 0.97005 * 119.99828 * 23.46359 * 13 11 10 42 42 H 1.08992 * 109.47196 * 59.99966 * 16 14 13 43 43 H 1.08998 * 109.46904 * 299.99621 * 16 14 13 44 44 H 1.08002 * 125.02923 * 0.02562 * 18 17 16 45 45 H 1.08999 * 109.47345 * 134.68718 * 20 19 18 46 46 H 0.96700 * 114.00311 * 60.00230 * 21 20 19 47 47 H 1.48506 * 109.99973 * 180.02562 * 22 20 19 48 48 H 1.48493 * 110.00375 * 301.32185 * 22 20 19 49 49 H 1.08004 * 120.11881 * 0.04069 * 24 23 19 50 50 H 1.08001 * 119.73912 * 180.02562 * 25 24 23 51 51 H 1.08002 * 119.66445 * 180.02562 * 26 25 24 52 52 H 1.08001 * 120.11110 * 179.97438 * 27 26 25 53 53 H 1.09006 * 113.61069 * 139.93956 * 29 11 10 54 54 H 1.08997 * 113.61488 * 270.84010 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1184 -2.7436 2.5437 9 1 1.9551 -2.2089 3.4794 10 6 1.6208 -4.1984 2.5701 11 6 3.0141 -4.5827 3.0950 12 1 3.0950 -4.5524 4.1816 13 7 3.5359 -5.8252 2.5201 14 6 4.4712 -6.5338 3.1830 15 8 4.8814 -6.1426 4.2552 16 6 5.0074 -7.8121 2.5919 17 7 6.0039 -8.3887 3.4979 18 6 7.3551 -8.1915 3.4083 19 6 7.9814 -8.8620 4.3880 20 6 9.4672 -8.9063 4.6359 21 8 9.9819 -10.1729 4.2200 22 14 10.2992 -7.5497 3.6675 23 6 6.9463 -9.5374 5.1744 24 6 6.9670 -10.3648 6.2984 25 6 5.7941 -10.8482 6.8066 26 6 4.5819 -10.5225 6.2144 27 6 4.5385 -9.7074 5.1043 28 6 5.7200 -9.2050 4.5697 29 6 3.5411 -3.3147 2.4025 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7208 -1.2495 39 1 1.3998 -4.6023 1.5820 40 1 0.8198 -4.3744 3.2881 41 1 3.2080 -6.1379 1.6624 42 1 5.4711 -7.6004 1.6285 43 1 4.1898 -8.5195 2.4540 44 1 7.8450 -7.5871 2.6592 45 1 9.6626 -8.7662 5.6991 46 1 9.8431 -10.3652 3.2825 47 1 11.7650 -7.5830 3.9029 48 1 10.0141 -7.7113 2.2191 49 1 7.9065 -10.6220 6.7648 50 1 5.8105 -11.4881 7.6765 51 1 3.6633 -10.9120 6.6279 52 1 3.5902 -9.4601 4.6505 53 1 4.2884 -2.7770 2.9862 54 1 3.8461 -3.4765 1.3687 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12626394_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:17 Heat of formation + Delta-G solvation = -53.094081 kcal Electronic energy + Delta-G solvation = -35717.492030 eV Core-core repulsion = 31008.915693 eV Total energy + Delta-G solvation = -4708.576336 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.192 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.54320 -42.15581 -40.89552 -39.41090 -38.14419 -37.80115 -37.57972 -35.12952 -34.61511 -33.96110 -31.45080 -30.23473 -29.21902 -28.42058 -28.34364 -27.57142 -26.81821 -25.73893 -23.87919 -23.36104 -22.57387 -21.69968 -21.16625 -20.66809 -20.35475 -18.77885 -18.49934 -18.38311 -17.74704 -17.59039 -17.26129 -17.10963 -16.57653 -16.40922 -16.37688 -16.08215 -16.02534 -15.50905 -15.49351 -15.28331 -14.87475 -14.72175 -14.69435 -14.64727 -14.29854 -14.06854 -13.80389 -13.60510 -13.54541 -13.40892 -13.18701 -13.07348 -12.97547 -12.90214 -12.72101 -12.61383 -12.57046 -12.44143 -12.42210 -12.38445 -12.02042 -11.99233 -11.72971 -11.72068 -11.42451 -11.13062 -10.94408 -10.53843 -10.44526 -10.14178 -9.15171 -8.62606 -4.86051 0.15143 0.64849 1.13037 1.35738 1.40133 1.46810 1.58706 1.63877 1.71590 1.97943 2.26778 2.96140 3.24983 3.33262 3.54151 3.59039 3.61969 3.65748 3.71034 3.71435 3.76019 3.77125 3.85183 3.91352 3.99064 4.04346 4.15459 4.22859 4.30873 4.49490 4.50919 4.54296 4.56134 4.59006 4.59939 4.65052 4.72172 4.72678 4.77036 4.79845 4.82145 4.83648 4.90403 4.90752 4.93259 5.08053 5.09398 5.14799 5.20986 5.24611 5.45290 5.51958 5.55164 5.67475 5.74526 5.76128 6.19432 6.24272 6.47574 6.60691 6.78098 7.13714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.140 4.140 4 C -0.179 4.179 5 O -0.357 6.357 6 C 0.474 3.526 7 O -0.522 6.522 8 C -0.111 4.111 9 H 0.142 0.858 10 C -0.116 4.116 11 C 0.129 3.871 12 H 0.109 0.891 13 N -0.703 5.703 14 C 0.495 3.505 15 O -0.563 6.563 16 C 0.086 3.914 17 N -0.466 5.466 18 C 0.075 3.925 19 C -0.215 4.215 20 C -0.051 4.051 21 O -0.553 6.553 22 Si 0.766 3.234 23 C -0.115 4.115 24 C -0.088 4.088 25 C -0.154 4.154 26 C -0.107 4.107 27 C -0.134 4.134 28 C 0.091 3.909 29 C -0.126 4.126 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.419 0.581 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.197 0.803 45 H 0.104 0.896 46 H 0.383 0.617 47 H -0.302 1.302 48 H -0.260 1.260 49 H 0.118 0.882 50 H 0.136 0.864 51 H 0.145 0.855 52 H 0.133 0.867 53 H 0.088 0.912 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 3.927 -5.376 7.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.197 4.197 4 C -0.236 4.236 5 O -0.274 6.274 6 C 0.318 3.682 7 O -0.411 6.411 8 C -0.131 4.131 9 H 0.159 0.841 10 C -0.154 4.154 11 C 0.023 3.977 12 H 0.127 0.873 13 N -0.356 5.356 14 C 0.281 3.719 15 O -0.440 6.440 16 C -0.039 4.039 17 N -0.148 5.148 18 C -0.051 4.051 19 C -0.223 4.223 20 C -0.159 4.159 21 O -0.361 6.361 22 Si 0.669 3.331 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.173 4.173 26 C -0.126 4.126 27 C -0.154 4.154 28 C -0.014 4.014 29 C -0.165 4.165 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.257 0.743 42 H 0.178 0.822 43 H 0.160 0.840 44 H 0.213 0.787 45 H 0.122 0.878 46 H 0.232 0.768 47 H -0.230 1.230 48 H -0.186 1.186 49 H 0.136 0.864 50 H 0.154 0.846 51 H 0.163 0.837 52 H 0.151 0.849 53 H 0.106 0.894 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.323 4.379 -5.118 7.510 hybrid contribution -0.349 -1.127 -0.712 1.377 sum -3.672 3.252 -5.829 7.618 Atomic orbital electron populations 1.22462 0.94027 1.03663 1.03621 1.22428 0.94485 0.93231 0.82708 1.21886 1.02404 0.91426 1.03995 1.22449 1.01791 1.02160 0.97216 1.86573 1.69660 1.25485 1.45678 1.23722 0.76516 0.80491 0.87435 1.90579 1.36071 1.70352 1.44109 1.22466 0.99519 0.95240 0.95829 0.84068 1.23291 0.96808 0.91474 1.03796 1.22322 0.93664 0.82527 0.99159 0.87297 1.45799 1.41110 1.24167 1.24526 1.21361 0.79438 0.86075 0.85041 1.90805 1.59336 1.70805 1.23090 1.21981 0.94236 0.93586 0.94078 1.43431 1.05657 1.40812 1.24905 1.22002 0.82101 1.00525 1.00469 1.20699 0.95111 1.06520 0.99935 1.24584 0.91002 0.93748 1.06583 1.86562 1.81377 1.36508 1.31667 0.94056 0.76851 0.84671 0.77537 1.19332 0.92745 1.01928 0.97959 1.20448 0.98801 0.96528 0.94871 1.20916 0.92235 1.02409 1.01694 1.21128 0.98733 0.97553 0.95204 1.20247 0.95389 1.01137 0.98632 1.18391 0.95495 0.96676 0.90797 1.23418 0.94358 0.96050 1.02654 0.91884 0.89666 0.91638 0.91253 0.88796 0.91362 0.91523 0.89747 0.91720 0.87885 0.88755 0.74282 0.82229 0.84028 0.78668 0.87835 0.76761 1.23020 1.18553 0.86376 0.84634 0.83723 0.84901 0.89382 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.09 8.37 71.98 0.60 0.52 16 2 C 0.11 0.03 1.13 -10.79 -0.01 0.01 16 3 C -0.14 0.47 8.85 71.98 0.64 1.10 16 4 C -0.18 0.05 8.37 71.98 0.60 0.65 16 5 O -0.36 -0.77 9.89 -51.40 -0.51 -1.28 16 6 C 0.47 0.52 6.80 71.24 0.48 1.01 16 7 O -0.52 -2.60 11.40 21.98 0.25 -2.35 16 8 C -0.11 0.52 4.26 -10.96 -0.05 0.47 16 9 H 0.14 -1.00 8.14 -2.39 -0.02 -1.02 16 10 C -0.12 0.76 7.15 31.11 0.22 0.98 16 11 C 0.13 -0.72 4.21 45.51 0.19 -0.53 16 12 H 0.11 -0.21 7.50 -2.39 -0.02 -0.23 16 13 N -0.70 5.56 5.36 -440.05 -2.36 3.20 16 14 C 0.50 -1.27 7.90 87.66 0.69 -0.58 16 15 O -0.56 -4.59 16.04 -3.03 -0.05 -4.64 16 16 C 0.09 -0.65 6.48 85.63 0.55 -0.09 16 17 N -0.47 -0.56 2.27 -520.01 -1.18 -1.74 16 18 C 0.07 0.07 9.89 83.00 0.82 0.89 16 19 C -0.22 -1.18 5.58 -18.63 -0.10 -1.28 16 20 C -0.05 -0.21 3.06 71.24 0.22 0.01 16 21 O -0.55 -3.67 12.88 -148.98 -1.92 -5.59 16 22 Si 0.77 -0.34 30.81 68.60 2.11 1.77 16 23 C -0.12 -1.10 6.35 -20.20 -0.13 -1.23 16 24 C -0.09 -0.82 10.05 22.23 0.22 -0.60 16 25 C -0.15 -0.98 9.97 22.03 0.22 -0.76 16 26 C -0.11 -0.49 10.01 22.29 0.22 -0.27 16 27 C -0.13 -0.64 10.00 22.37 0.22 -0.42 16 28 C 0.09 0.62 6.80 39.03 0.27 0.89 16 29 C -0.13 0.71 7.45 31.18 0.23 0.94 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.06 0.29 5.89 -2.39 -0.01 0.27 16 33 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.07 0.22 5.89 -2.39 -0.01 0.21 16 37 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.10 -0.62 7.41 -2.39 -0.02 -0.63 16 40 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 41 H 0.42 -5.83 8.71 -92.70 -0.81 -6.63 16 42 H 0.16 -2.42 8.12 -2.39 -0.02 -2.44 16 43 H 0.14 -1.72 8.14 -2.39 -0.02 -1.74 16 44 H 0.20 -1.12 6.27 -2.91 -0.02 -1.14 16 45 H 0.10 0.52 7.96 -2.39 -0.02 0.51 16 46 H 0.38 0.00 8.70 -74.06 -0.64 -0.64 16 47 H -0.30 -2.20 7.11 99.48 0.71 -1.50 16 48 H -0.26 0.12 7.00 99.48 0.70 0.81 16 49 H 0.12 1.00 8.06 -2.91 -0.02 0.97 16 50 H 0.14 0.32 8.06 -2.91 -0.02 0.30 16 51 H 0.15 -0.07 8.06 -2.91 -0.02 -0.10 16 52 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16 53 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 54 H 0.09 -0.55 8.10 -2.39 -0.02 -0.57 16 Total: 0.00 -27.29 441.78 1.98 -25.31 By element: Atomic # 1 Polarization: -15.91 SS G_CDS: -0.50 Total: -16.41 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.12 Total: 1.72 kcal Atomic # 7 Polarization: 5.00 SS G_CDS: -3.54 Total: 1.46 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -2.22 Total: -13.85 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.11 Total: 1.77 kcal Total: -27.29 1.98 -25.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12626394_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.787 kcal (2) G-P(sol) polarization free energy of solvation -27.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds