Wall clock time and date at job start Tue Mar 9 2021 12:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00439 * 2 1 4 4 O 1.20826 * 119.99630 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00102 * 180.02562 * 3 2 1 6 6 N 1.46497 * 112.85243 * 324.05660 * 5 3 2 7 7 C 1.34777 * 120.00376 * 293.64927 * 6 5 3 8 8 O 1.21699 * 119.99515 * 354.98049 * 7 6 5 9 9 C 1.46425 * 120.00211 * 174.98365 * 7 6 5 10 10 C 1.34813 * 119.99920 * 179.97438 * 9 7 6 11 11 C 1.47203 * 120.00107 * 179.97438 * 10 9 7 12 12 C 1.39835 * 120.17178 * 179.97438 * 11 10 9 13 13 C 1.37891 * 119.82392 * 180.25831 * 12 11 10 14 14 C 1.38399 * 120.17260 * 359.45159 * 13 12 11 15 15 C 1.50704 * 119.82909 * 180.25861 * 14 13 12 16 16 O 1.42903 * 109.47118 * 245.29711 * 15 14 13 17 17 Si 1.86300 * 109.46774 * 5.29498 * 15 14 13 18 18 C 1.38407 * 120.34503 * 0.55339 * 14 13 12 19 19 C 1.37892 * 120.16999 * 359.72716 * 18 14 13 20 20 C 1.53788 * 113.61410 * 192.86523 * 5 3 2 21 21 C 1.53782 * 87.07856 * 270.80176 * 20 5 3 22 22 H 1.08997 * 113.62157 * 89.11546 * 21 20 5 23 23 O 1.42900 * 113.61172 * 219.93691 * 21 20 5 24 24 C 1.53780 * 113.69058 * 95.32991 * 5 3 2 25 25 H 1.09001 * 109.47233 * 59.99483 * 1 2 3 26 26 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46803 * 299.99551 * 1 2 3 28 28 H 0.96999 * 120.00061 * 113.64021 * 6 5 3 29 29 H 1.07999 * 119.99932 * 359.97438 * 9 7 6 30 30 H 1.08001 * 119.99638 * 0.02562 * 10 9 7 31 31 H 1.08000 * 120.08685 * 359.97438 * 12 11 10 32 32 H 1.07997 * 119.90995 * 179.72693 * 13 12 11 33 33 H 1.09001 * 109.47235 * 125.29317 * 15 14 13 34 34 H 0.96701 * 113.99856 * 59.99253 * 16 15 14 35 35 H 1.48499 * 109.99865 * 180.02562 * 17 15 14 36 36 H 1.48497 * 110.00373 * 301.31850 * 17 15 14 37 37 H 1.07998 * 119.91326 * 179.74400 * 18 14 13 38 38 H 1.07992 * 120.08634 * 179.97438 * 19 18 14 39 39 H 1.09004 * 113.61285 * 25.34611 * 20 5 3 40 40 H 1.08997 * 113.61622 * 156.16555 * 20 5 3 41 41 H 0.96706 * 114.00267 * 180.02562 * 23 21 20 42 42 H 1.09004 * 113.61211 * 203.67511 * 24 5 3 43 43 H 1.08996 * 113.61581 * 334.57866 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 4.1920 0.2128 0.7914 7 6 4.0242 0.1812 2.1283 8 8 3.4305 1.0839 2.6884 9 6 4.5563 -0.9390 2.9067 10 6 4.3889 -0.9702 4.2441 11 6 4.9234 -2.0966 5.0266 12 6 4.7523 -2.1324 6.4140 13 6 5.2605 -3.1884 7.1407 14 6 5.9286 -4.2167 6.4990 15 6 6.4758 -5.3699 7.3002 16 8 7.9027 -5.3701 7.2214 17 14 5.9522 -5.1938 9.0794 18 6 6.1021 -4.1885 5.1262 19 6 5.6047 -3.1366 4.3863 20 6 4.1099 2.6787 0.3132 21 6 4.0436 2.9562 -1.1979 22 1 3.0856 3.3592 -1.5263 23 8 5.1580 3.7016 -1.6923 24 6 4.1760 1.4379 -1.4029 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.7269 -0.4677 0.3536 29 1 5.0829 -1.7402 2.4095 30 1 3.8620 -0.1692 4.7411 31 1 4.2275 -1.3328 6.9156 32 1 5.1330 -3.2152 8.2127 33 1 6.0897 -6.3069 6.8988 34 1 8.3155 -4.5646 7.5619 35 1 6.4860 -6.3247 9.8802 36 1 6.4454 -3.9055 9.6290 37 1 6.6281 -4.9926 4.6332 38 1 5.7412 -3.1157 3.3152 39 1 3.4250 3.2909 0.9000 40 1 5.1235 2.6750 0.7139 41 1 5.1219 3.8798 -2.6421 42 1 5.2084 1.0951 -1.4728 43 1 3.5447 1.0485 -2.2015 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:10 Heat of formation + Delta-G solvation = -118.479482 kcal Electronic energy + Delta-G solvation = -28019.709963 eV Core-core repulsion = 23805.418639 eV Total energy + Delta-G solvation = -4214.291325 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.60454 -40.84870 -40.48346 -39.68010 -37.90485 -37.64387 -36.54466 -35.12943 -34.10377 -32.07303 -31.37692 -29.31475 -27.48392 -27.17186 -26.19830 -24.26753 -23.92665 -23.03602 -21.99964 -20.83838 -20.50657 -19.36929 -18.66492 -18.54042 -18.34259 -17.91695 -17.56244 -17.04681 -16.85960 -16.36025 -16.26297 -16.00393 -15.89330 -15.56470 -15.46110 -14.85598 -14.68129 -14.56523 -14.43970 -14.08273 -13.84731 -13.82009 -13.66566 -13.49003 -13.42870 -13.19648 -12.96318 -12.64533 -12.24419 -12.11056 -11.97831 -11.95688 -11.82835 -11.61901 -11.36634 -11.15703 -11.03914 -10.61472 -10.43568 -9.96930 -9.27259 -4.93026 -0.57724 0.40674 0.77131 0.85850 1.30063 1.42987 1.58151 1.87232 1.94631 2.16939 2.80390 2.96899 3.11442 3.32666 3.40459 3.43444 3.48491 3.63107 3.72929 3.77543 3.95934 4.02460 4.15956 4.17158 4.19794 4.20031 4.36071 4.47197 4.48283 4.54686 4.57905 4.59082 4.66469 4.75260 4.85326 4.88781 4.95776 5.09237 5.10923 5.14005 5.21918 5.38712 5.48071 5.59853 5.90937 6.35936 6.46420 6.46603 6.80838 7.06475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.523 6.523 5 C 0.152 3.848 6 N -0.689 5.689 7 C 0.545 3.455 8 O -0.580 6.580 9 C -0.208 4.208 10 C -0.015 4.015 11 C -0.082 4.082 12 C -0.096 4.096 13 C -0.127 4.127 14 C -0.108 4.108 15 C -0.081 4.081 16 O -0.547 6.547 17 Si 0.761 3.239 18 C -0.104 4.104 19 C -0.098 4.098 20 C -0.113 4.113 21 C 0.083 3.917 22 H 0.089 0.911 23 O -0.566 6.566 24 C -0.132 4.132 25 H 0.070 0.930 26 H 0.134 0.866 27 H 0.052 0.948 28 H 0.429 0.571 29 H 0.166 0.834 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.386 0.614 35 H -0.305 1.305 36 H -0.284 1.284 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.401 0.599 42 H 0.140 0.860 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -5.332 -4.136 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.317 3.683 4 O -0.411 6.411 5 C 0.063 3.937 6 N -0.344 5.344 7 C 0.337 3.663 8 O -0.461 6.461 9 C -0.229 4.229 10 C -0.035 4.035 11 C -0.082 4.082 12 C -0.114 4.114 13 C -0.144 4.144 14 C -0.108 4.108 15 C -0.191 4.191 16 O -0.355 6.355 17 Si 0.668 3.332 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.151 4.151 21 C 0.023 3.977 22 H 0.107 0.893 23 O -0.375 6.375 24 C -0.169 4.169 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.071 0.929 28 H 0.269 0.731 29 H 0.183 0.817 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.235 0.765 35 H -0.234 1.234 36 H -0.210 1.210 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.252 0.748 42 H 0.158 0.842 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.088 -4.946 -2.604 5.590 hybrid contribution 0.620 0.537 -0.645 1.044 sum 0.532 -4.409 -3.249 5.502 Atomic orbital electron populations 1.23585 0.74637 1.05918 1.02449 1.86487 1.24949 1.32157 1.83183 1.23644 0.91589 0.81669 0.71446 1.90677 1.67015 1.37399 1.45995 1.20983 0.84748 0.90677 0.97303 1.45502 1.52758 1.30103 1.06058 1.18904 0.78684 0.86332 0.82414 1.90860 1.44091 1.39819 1.71338 1.22904 1.05937 0.99286 0.94728 1.22396 0.92268 0.94918 0.93902 1.19098 1.00359 0.95027 0.93701 1.21573 0.98298 0.98544 0.92989 1.21169 0.98752 0.93991 1.00497 1.20521 0.98796 0.96361 0.95142 1.25202 0.82949 1.00255 1.10663 1.86583 1.18241 1.45199 1.85483 0.94062 0.90686 0.76211 0.72265 1.21143 0.98951 0.98853 0.93226 1.21698 0.95976 0.92621 1.01292 1.23297 1.02375 0.92492 0.96960 1.23107 0.90345 0.90453 0.93775 0.89320 1.86494 1.44312 1.75821 1.30840 1.24016 1.04432 0.97042 0.91444 0.91170 0.84790 0.92934 0.73114 0.81684 0.85824 0.83928 0.84080 0.85404 0.76469 1.23369 1.21044 0.84559 0.83081 0.91766 0.87492 0.74759 0.84197 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.21 16 2 O -0.35 -1.70 10.42 -51.34 -0.53 -2.24 16 3 C 0.47 3.64 6.44 71.23 0.46 4.10 16 4 O -0.52 -7.12 15.11 21.96 0.33 -6.79 16 5 C 0.15 0.31 1.11 3.38 0.00 0.31 16 6 N -0.69 1.04 5.12 -428.10 -2.19 -1.16 16 7 C 0.55 2.27 7.39 86.37 0.64 2.91 16 8 O -0.58 -7.99 15.27 -4.34 -0.07 -8.05 16 9 C -0.21 0.36 9.41 23.62 0.22 0.58 16 10 C -0.01 0.00 9.46 23.84 0.23 0.22 16 11 C -0.08 0.10 5.87 -20.15 -0.12 -0.02 16 12 C -0.10 0.17 9.80 22.57 0.22 0.39 16 13 C -0.13 0.32 8.65 22.23 0.19 0.51 16 14 C -0.11 0.22 5.36 -19.78 -0.11 0.11 16 15 C -0.08 0.19 2.80 71.24 0.20 0.39 16 16 O -0.55 -0.53 12.83 -148.98 -1.91 -2.44 16 17 Si 0.76 -2.09 29.88 68.60 2.05 -0.04 16 18 C -0.10 0.25 9.66 22.23 0.21 0.46 16 19 C -0.10 0.33 9.41 22.58 0.21 0.55 16 20 C -0.11 -0.63 6.15 31.12 0.19 -0.44 16 21 C 0.08 0.04 4.82 31.12 0.15 0.19 16 22 H 0.09 0.16 7.62 -2.39 -0.02 0.14 16 23 O -0.57 0.01 13.67 -148.98 -2.04 -2.03 16 24 C -0.13 0.66 7.22 31.12 0.22 0.89 16 25 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 26 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 27 H 0.05 0.18 8.13 -2.39 -0.02 0.16 16 28 H 0.43 -4.08 8.69 -92.71 -0.81 -4.89 16 29 H 0.17 -1.51 6.07 -2.91 -0.02 -1.53 16 30 H 0.12 0.36 7.52 -2.91 -0.02 0.33 16 31 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 32 H 0.14 -0.76 4.81 -2.91 -0.01 -0.78 16 33 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 34 H 0.39 -1.65 8.70 -74.06 -0.64 -2.29 16 35 H -0.31 -1.65 7.11 99.48 0.71 -0.95 16 36 H -0.28 -0.31 6.99 99.48 0.70 0.38 16 37 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 38 H 0.15 -1.28 6.17 -2.91 -0.02 -1.30 16 39 H 0.06 0.76 7.64 -2.38 -0.02 0.75 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.40 -3.66 9.12 -74.05 -0.68 -4.34 16 42 H 0.14 -1.30 8.14 -2.38 -0.02 -1.32 16 43 H 0.10 -0.82 8.10 -2.39 -0.02 -0.84 16 Total: 0.00 -27.67 369.72 -1.25 -28.91 By element: Atomic # 1 Polarization: -17.53 SS G_CDS: -1.01 Total: -18.54 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.13 Total: 12.37 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -2.19 Total: -1.16 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -4.22 Total: -21.55 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.05 Total: -0.04 kcal Total: -27.67 -1.25 -28.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.565 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds