Wall clock time and date at job start Tue Mar 9 2021 12:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99837 * 2 1 4 4 O 1.20827 * 120.00336 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00101 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.84566 * 324.05821 * 5 3 2 7 7 C 1.34777 * 120.00186 * 293.63891 * 6 5 3 8 8 O 1.21279 * 119.99878 * 354.98587 * 7 6 5 9 9 C 1.50695 * 120.00136 * 174.99090 * 7 6 5 10 10 C 1.50696 * 109.47235 * 179.97438 * 9 7 6 11 11 C 1.34857 * 125.88750 * 85.02075 * 10 9 7 12 12 C 1.40896 * 107.41401 * 179.74824 * 11 10 9 13 13 C 1.34848 * 107.41756 * 0.22997 * 12 11 10 14 14 C 1.50700 * 125.88686 * 179.97438 * 13 12 11 15 15 O 1.42907 * 109.46744 * 245.02288 * 14 13 12 16 16 Si 1.86292 * 109.47454 * 5.02272 * 14 13 12 17 17 N 1.36336 * 108.22154 * 359.97438 * 13 12 11 18 18 C 1.53780 * 113.61718 * 192.86033 * 5 3 2 19 19 C 1.53781 * 87.07836 * 270.80055 * 18 5 3 20 20 H 1.08999 * 113.61692 * 89.12145 * 19 18 5 21 21 O 1.42905 * 113.61282 * 219.93074 * 19 18 5 22 22 C 1.53779 * 87.08388 * 334.56392 * 19 18 5 23 23 H 1.08995 * 109.46691 * 60.00657 * 1 2 3 24 24 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47609 * 300.00471 * 1 2 3 26 26 H 0.97004 * 119.99743 * 113.64699 * 6 5 3 27 27 H 1.09001 * 109.47444 * 59.99905 * 9 7 6 28 28 H 1.08996 * 109.47171 * 299.99820 * 9 7 6 29 29 H 1.07992 * 126.29573 * 0.02562 * 11 10 9 30 30 H 1.08005 * 126.28934 * 180.20450 * 12 11 10 31 31 H 1.08999 * 109.47135 * 125.03192 * 14 13 12 32 32 H 0.96706 * 113.99625 * 180.02562 * 15 14 13 33 33 H 1.48501 * 110.00315 * 300.00270 * 16 14 13 34 34 H 1.48501 * 110.00079 * 61.32226 * 16 14 13 35 35 H 0.96998 * 125.63969 * 179.97438 * 17 13 12 36 36 H 1.09004 * 113.61322 * 25.34819 * 18 5 3 37 37 H 1.08998 * 113.61262 * 156.16941 * 18 5 3 38 38 H 0.96692 * 113.99957 * 179.97438 * 21 19 18 39 39 H 1.08990 * 113.61660 * 270.88783 * 22 19 18 40 40 H 1.09006 * 113.61214 * 139.97781 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1913 0.2133 0.7935 7 6 4.0225 0.1824 2.1303 8 8 3.4304 1.0822 2.6877 9 6 4.5696 -0.9700 2.9324 10 6 4.2493 -0.7642 4.3905 11 6 3.0994 -1.1108 5.0038 12 6 3.2188 -0.7478 6.3600 13 6 4.4350 -0.1885 6.5225 14 6 4.9945 0.3492 7.8144 15 8 5.1808 1.7615 7.7014 16 14 3.8067 -0.0114 9.2034 17 7 5.0711 -0.1935 5.3167 18 6 4.1095 2.6790 0.3141 19 6 4.0444 2.9558 -1.1972 20 1 3.0867 3.3587 -1.5265 21 8 5.1592 3.7012 -1.6911 22 6 4.1771 1.4374 -1.4014 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 4.7267 -0.4673 0.3563 27 1 5.6505 -1.0227 2.8022 28 1 4.1165 -1.8997 2.5883 29 1 2.2458 -1.5841 4.5416 30 1 2.4730 -0.8908 7.1280 31 1 5.9522 -0.1280 8.0220 32 1 5.5396 2.1759 8.4981 33 1 2.4970 0.6339 8.9322 34 1 3.6291 -1.4783 9.3520 35 1 5.9621 0.1499 5.1463 36 1 3.4242 3.2915 0.9001 37 1 5.1229 2.6755 0.7155 38 1 5.1241 3.8781 -2.6411 39 1 5.2095 1.0947 -1.4703 40 1 3.5463 1.0476 -2.2003 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:31 Heat of formation + Delta-G solvation = -122.241342 kcal Electronic energy + Delta-G solvation = -26514.679579 eV Core-core repulsion = 22491.251498 eV Total energy + Delta-G solvation = -4023.428081 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.70364 -42.36398 -40.62306 -39.66102 -37.69969 -37.67211 -36.54116 -34.32357 -33.05378 -32.11950 -29.76650 -29.15925 -27.21035 -26.45019 -25.06938 -23.36401 -22.04971 -21.52483 -21.14464 -20.81394 -19.45698 -18.54501 -18.43639 -18.37051 -18.10242 -17.85184 -17.50470 -16.88214 -16.30939 -15.86381 -15.67428 -15.39981 -15.18489 -14.96077 -14.73202 -14.64407 -14.47643 -14.16321 -13.96268 -13.71215 -13.54669 -13.46489 -13.38741 -13.24177 -12.93118 -12.67338 -12.55122 -12.06152 -12.01045 -11.98509 -11.85246 -11.15074 -11.04337 -10.44853 -10.44109 -9.98785 -9.11520 -4.99652 0.74389 0.92278 1.24460 1.27835 1.54734 1.63429 1.70319 2.03138 2.05022 2.33238 2.94091 3.08152 3.31783 3.40516 3.45457 3.51173 3.59770 3.89770 3.90547 4.06464 4.12614 4.13742 4.15920 4.21781 4.29185 4.44736 4.52184 4.53195 4.55448 4.62995 4.64284 4.71794 4.84585 5.03205 5.09299 5.10321 5.18913 5.80508 5.93323 6.32145 6.43739 6.55846 6.78297 6.83958 7.08603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.473 3.527 4 O -0.526 6.526 5 C 0.154 3.846 6 N -0.692 5.692 7 C 0.511 3.489 8 O -0.567 6.567 9 C -0.061 4.061 10 C 0.039 3.961 11 C -0.201 4.201 12 C -0.229 4.229 13 C 0.020 3.980 14 C -0.061 4.061 15 O -0.571 6.571 16 Si 0.814 3.186 17 N -0.529 5.529 18 C -0.113 4.113 19 C 0.082 3.918 20 H 0.086 0.914 21 O -0.566 6.566 22 C -0.129 4.129 23 H 0.069 0.931 24 H 0.135 0.865 25 H 0.048 0.952 26 H 0.431 0.569 27 H 0.142 0.858 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.405 0.595 33 H -0.310 1.310 34 H -0.286 1.286 35 H 0.424 0.576 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.401 0.599 39 H 0.143 0.857 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -5.834 -2.775 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.315 3.685 4 O -0.414 6.414 5 C 0.065 3.935 6 N -0.349 5.349 7 C 0.299 3.701 8 O -0.444 6.444 9 C -0.101 4.101 10 C -0.076 4.076 11 C -0.225 4.225 12 C -0.254 4.254 13 C -0.094 4.094 14 C -0.170 4.170 15 O -0.381 6.381 16 Si 0.720 3.280 17 N -0.125 5.125 18 C -0.151 4.151 19 C 0.022 3.978 20 H 0.104 0.896 21 O -0.374 6.374 22 C -0.167 4.167 23 H 0.088 0.912 24 H 0.153 0.847 25 H 0.067 0.933 26 H 0.271 0.729 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.257 0.743 33 H -0.238 1.238 34 H -0.214 1.214 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.253 0.747 39 H 0.161 0.839 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.410 -5.359 -2.154 7.914 hybrid contribution -0.403 0.114 -1.104 1.180 sum 5.008 -5.246 -3.258 7.950 Atomic orbital electron populations 1.23569 0.74768 1.05929 1.02279 1.86476 1.24814 1.32111 1.83197 1.23736 0.91754 0.81638 0.71369 1.90681 1.67138 1.37538 1.46060 1.20939 0.84538 0.90693 0.97344 1.45602 1.53136 1.30213 1.05952 1.21265 0.78859 0.87562 0.82453 1.90822 1.42802 1.39597 1.71198 1.20265 1.05723 0.97984 0.86115 1.19919 0.92246 1.03778 0.91618 1.20781 0.98716 1.09154 0.93837 1.20722 0.96944 1.09775 0.97914 1.20124 0.94563 1.06796 0.87883 1.24607 1.08551 0.84768 0.99028 1.86480 1.88362 1.18818 1.44436 0.94477 0.75483 0.77562 0.80509 1.41840 1.16664 1.46987 1.06983 1.23282 1.02244 0.92697 0.96924 1.23100 0.90270 0.90664 0.93718 0.89604 1.86489 1.44248 1.75863 1.30829 1.24003 1.04522 0.96758 0.91389 0.91177 0.84651 0.93308 0.72891 0.83995 0.83240 0.84245 0.85789 0.88274 0.74274 1.23818 1.21370 0.73715 0.92395 0.87416 0.74742 0.83920 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 113.37 1.20 1.25 16 2 O -0.35 -1.87 10.42 -51.37 -0.54 -2.40 16 3 C 0.47 4.00 6.45 71.24 0.46 4.46 16 4 O -0.53 -7.97 15.11 21.96 0.33 -7.64 16 5 C 0.15 0.30 1.11 3.39 0.00 0.31 16 6 N -0.69 2.03 5.13 -423.92 -2.17 -0.15 16 7 C 0.51 1.66 7.47 87.66 0.66 2.31 16 8 O -0.57 -8.76 15.08 -3.03 -0.05 -8.81 16 9 C -0.06 0.23 6.24 29.10 0.18 0.41 16 10 C 0.04 0.22 5.66 41.08 0.23 0.45 16 11 C -0.20 -2.09 10.77 22.14 0.24 -1.86 16 12 C -0.23 -2.86 9.37 22.14 0.21 -2.65 16 13 C 0.02 0.18 6.53 41.08 0.27 0.45 16 14 C -0.06 -0.12 3.07 71.24 0.22 0.09 16 15 O -0.57 -1.65 12.86 -148.98 -1.92 -3.57 16 16 Si 0.81 0.59 30.60 68.60 2.10 2.69 16 17 N -0.53 -2.98 6.07 -171.12 -1.04 -4.02 16 18 C -0.11 -0.70 6.15 31.12 0.19 -0.50 16 19 C 0.08 0.08 4.82 31.12 0.15 0.23 16 20 H 0.09 0.23 7.63 -2.39 -0.02 0.21 16 21 O -0.57 -0.09 13.67 -148.98 -2.04 -2.12 16 22 C -0.13 0.68 7.22 31.12 0.22 0.91 16 23 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 24 H 0.14 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H 0.05 0.26 8.13 -2.39 -0.02 0.24 16 26 H 0.43 -5.09 8.71 -92.71 -0.81 -5.90 16 27 H 0.14 -1.62 8.14 -2.39 -0.02 -1.63 16 28 H 0.15 -1.37 8.14 -2.39 -0.02 -1.39 16 29 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.12 1.55 6.24 -2.91 -0.02 1.54 16 31 H 0.10 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.41 -3.48 8.74 -74.05 -0.65 -4.13 16 33 H -0.31 -3.25 7.11 99.48 0.71 -2.55 16 34 H -0.29 -1.66 7.11 99.48 0.71 -0.96 16 35 H 0.42 0.13 8.96 -92.71 -0.83 -0.70 16 36 H 0.06 0.79 7.64 -2.39 -0.02 0.77 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.40 -3.60 9.12 -74.06 -0.68 -4.28 16 39 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 40 H 0.10 -0.83 8.10 -2.38 -0.02 -0.85 16 Total: 0.00 -37.75 346.69 -2.89 -40.63 By element: Atomic # 1 Polarization: -18.67 SS G_CDS: -1.80 Total: -20.47 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 4.23 Total: 5.85 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -3.21 Total: -4.16 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -4.20 Total: -24.54 kcal Atomic # 14 Polarization: 0.59 SS G_CDS: 2.10 Total: 2.69 kcal Total: -37.75 -2.89 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.607 kcal (2) G-P(sol) polarization free energy of solvation -37.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds