Wall clock time and date at job start Tue Mar 9 2021 12:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 N 1.46496 * 112.84401 * 23.80942 * 5 3 2 7 7 C 1.34786 * 120.00072 * 309.66254 * 6 5 3 8 8 O 1.21283 * 119.99722 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00120 * 180.02562 * 7 6 5 10 10 O 1.42899 * 109.46942 * 179.97438 * 9 7 6 11 11 C 1.35900 * 116.99738 * 179.97438 * 10 9 7 12 12 C 1.38739 * 120.05611 * 359.73139 * 11 10 9 13 13 C 1.38147 * 119.94302 * 179.74202 * 12 11 10 14 14 C 1.38269 * 120.05251 * 0.50710 * 13 12 11 15 15 C 1.50699 * 119.94191 * 179.74750 * 14 13 12 16 16 O 1.42896 * 109.47498 * 120.01995 * 15 14 13 17 17 Si 1.86302 * 109.47261 * 0.02562 * 15 14 13 18 18 C 1.38261 * 120.11377 * 359.76594 * 14 13 12 19 19 C 1.38143 * 120.05743 * 359.97438 * 18 14 13 20 20 C 1.53774 * 113.61648 * 252.49913 * 5 3 2 21 21 C 1.53780 * 87.08081 * 220.01465 * 20 5 3 22 22 H 1.09002 * 113.61408 * 139.98196 * 21 20 5 23 23 O 1.42898 * 113.69284 * 270.87522 * 21 20 5 24 24 C 1.53776 * 113.61483 * 154.99796 * 5 3 2 25 25 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 26 26 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 28 28 H 0.97003 * 120.00554 * 129.66803 * 6 5 3 29 29 H 1.09001 * 109.46992 * 300.00458 * 9 7 6 30 30 H 1.08999 * 109.46891 * 60.00087 * 9 7 6 31 31 H 1.08001 * 120.02520 * 359.97438 * 12 11 10 32 32 H 1.07994 * 119.97496 * 180.27297 * 13 12 11 33 33 H 1.09004 * 109.46845 * 240.02068 * 15 14 13 34 34 H 0.96699 * 114.00606 * 179.97438 * 16 15 14 35 35 H 1.48500 * 110.00007 * 298.68336 * 17 15 14 36 36 H 1.48498 * 109.99938 * 59.99942 * 17 15 14 37 37 H 1.08006 * 119.97343 * 179.97438 * 18 14 13 38 38 H 1.08005 * 120.03157 * 179.97438 * 19 18 14 39 39 H 1.08999 * 113.61693 * 334.56682 * 20 5 3 40 40 H 1.09005 * 113.61024 * 105.47112 * 20 5 3 41 41 H 0.96698 * 113.99783 * 277.53222 * 23 21 20 42 42 H 1.08999 * 113.62182 * 254.53670 * 24 5 3 43 43 H 1.09000 * 113.61324 * 25.35588 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1992 0.0712 -0.5439 7 6 3.8374 -1.1449 -0.0892 8 8 2.9874 -1.2426 0.7704 9 6 4.4888 -2.3832 -0.6489 10 8 3.9412 -3.5391 -0.0117 11 6 4.4236 -4.7472 -0.4048 12 6 5.4000 -4.8190 -1.3879 13 6 5.8926 -6.0480 -1.7820 14 6 5.4059 -7.2064 -1.2051 15 6 5.9409 -8.5461 -1.6410 16 8 6.5240 -9.2138 -0.5202 17 14 7.2348 -8.2993 -2.9585 18 6 4.4288 -7.1379 -0.2292 19 6 3.9367 -5.9111 0.1722 20 6 4.1588 1.7306 1.3445 21 6 5.1632 2.5627 0.5299 22 1 5.3640 3.5454 0.9569 23 8 6.3551 1.8518 0.1892 24 6 4.1148 2.5823 -0.5950 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 4.8788 0.1493 -1.2317 29 1 4.3042 -2.4375 -1.7218 30 1 5.5627 -2.3428 -0.4666 31 1 5.7773 -3.9146 -1.8419 32 1 6.6558 -6.1042 -2.5440 33 1 5.1263 -9.1502 -2.0403 34 1 6.8894 -10.0848 -0.7275 35 1 6.6337 -7.6343 -4.1424 36 1 8.3511 -7.4770 -2.4263 37 1 4.0499 -8.0442 0.2196 38 1 3.1732 -5.8580 0.9342 39 1 3.4746 2.3338 1.9413 40 1 4.6205 0.9240 1.9140 41 1 7.0183 1.8360 0.8928 42 1 4.5409 2.4635 -1.5911 43 1 3.4180 3.4180 -0.5297 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:45 Heat of formation + Delta-G solvation = -156.503314 kcal Electronic energy + Delta-G solvation = -29691.649106 eV Core-core repulsion = 25285.252893 eV Total energy + Delta-G solvation = -4406.396213 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54063 -41.49730 -40.54765 -39.82208 -38.85257 -37.54859 -37.18264 -36.14219 -34.10818 -32.54173 -31.90627 -30.02356 -28.98349 -27.18109 -26.63279 -26.08646 -24.21807 -22.90206 -22.35778 -21.75111 -20.54902 -19.63943 -19.17961 -18.82709 -18.34711 -18.04982 -17.88953 -17.51890 -17.32666 -17.03182 -16.80534 -16.66915 -15.79642 -15.65279 -15.53756 -15.38373 -15.20161 -14.85171 -14.52857 -14.48020 -14.11538 -13.92027 -13.90547 -13.73355 -13.53675 -13.42233 -13.35224 -13.05587 -12.54887 -12.47687 -12.20394 -12.08350 -12.01011 -11.88662 -11.84598 -11.63745 -10.99706 -10.87511 -10.30577 -10.28369 -10.17391 -9.31200 -4.91415 0.12740 0.18255 0.84119 1.32504 1.33519 1.44434 1.66389 1.68292 1.98311 2.41487 2.51739 2.89250 3.04295 3.29204 3.41365 3.49548 3.51955 3.60921 3.74016 3.78312 3.91455 3.97745 4.01518 4.12195 4.14959 4.18079 4.23138 4.33291 4.42280 4.48842 4.55858 4.60012 4.62684 4.68120 4.70819 4.81796 4.81954 5.04551 5.10041 5.21930 5.26598 5.37574 5.56723 6.14476 6.35518 6.54223 6.80318 6.94035 7.08545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.330 6.330 3 C 0.459 3.541 4 O -0.533 6.533 5 C 0.153 3.847 6 N -0.683 5.683 7 C 0.510 3.490 8 O -0.519 6.519 9 C 0.041 3.959 10 O -0.310 6.310 11 C 0.123 3.877 12 C -0.202 4.202 13 C -0.099 4.099 14 C -0.129 4.129 15 C -0.077 4.077 16 O -0.566 6.566 17 Si 0.773 3.227 18 C -0.056 4.056 19 C -0.159 4.159 20 C -0.163 4.163 21 C 0.103 3.897 22 H 0.106 0.894 23 O -0.556 6.556 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.426 0.574 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.159 0.841 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.403 0.597 35 H -0.286 1.286 36 H -0.296 1.296 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.403 0.597 42 H 0.108 0.892 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 -1.754 -4.140 7.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.244 6.244 3 C 0.302 3.698 4 O -0.423 6.423 5 C 0.063 3.937 6 N -0.341 5.341 7 C 0.296 3.704 8 O -0.393 6.393 9 C -0.037 4.037 10 O -0.223 6.223 11 C 0.078 3.922 12 C -0.221 4.221 13 C -0.116 4.116 14 C -0.130 4.130 15 C -0.186 4.186 16 O -0.375 6.375 17 Si 0.679 3.321 18 C -0.074 4.074 19 C -0.177 4.177 20 C -0.202 4.202 21 C 0.043 3.957 22 H 0.124 0.876 23 O -0.365 6.365 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.266 0.734 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.176 0.824 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.254 0.746 35 H -0.213 1.213 36 H -0.223 1.223 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.254 0.746 42 H 0.127 0.873 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.988 -0.520 -4.115 6.488 hybrid contribution -0.420 0.470 0.589 0.862 sum 4.568 -0.050 -3.527 5.772 Atomic orbital electron populations 1.23428 0.76800 1.04652 1.02111 1.87004 1.23346 1.31878 1.82145 1.24346 0.92395 0.81678 0.71339 1.90654 1.67110 1.37187 1.47319 1.21328 0.83531 0.88467 1.00363 1.45193 1.43122 1.02520 1.43279 1.20391 0.82447 0.84781 0.82816 1.90805 1.30979 1.86392 1.31161 1.22623 0.99860 0.82067 0.99121 1.86123 1.62099 1.12215 1.61910 1.19146 0.93746 0.85047 0.94281 1.21392 1.00378 0.99685 1.00597 1.20859 0.98862 0.92469 0.99459 1.19679 0.99109 0.94376 0.99789 1.24799 1.04705 0.92354 0.96774 1.86440 1.79357 1.37255 1.34491 0.94345 0.76442 0.86955 0.74374 1.20996 0.94399 0.97346 0.94628 1.20718 1.03570 0.90129 1.03306 1.24135 0.99940 1.01435 0.94696 1.22478 0.84382 0.95023 0.93808 0.87613 1.86349 1.27583 1.76989 1.45563 1.23466 0.96925 0.93288 1.01109 0.92406 0.86890 0.91770 0.73411 0.86360 0.86084 0.82372 0.85765 0.89005 0.74606 1.21336 1.22338 0.83636 0.84469 0.87998 0.89873 0.74583 0.87311 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.56 113.37 1.20 1.36 16 2 O -0.33 -3.74 6.35 -43.43 -0.28 -4.02 16 3 C 0.46 4.31 7.04 71.24 0.50 4.81 16 4 O -0.53 -6.91 15.81 21.96 0.35 -6.56 16 5 C 0.15 0.27 1.11 3.38 0.00 0.27 16 6 N -0.68 0.78 4.77 -423.92 -2.02 -1.24 16 7 C 0.51 2.16 7.24 87.66 0.63 2.80 16 8 O -0.52 -7.04 13.08 27.19 0.36 -6.68 16 9 C 0.04 -0.03 5.22 71.24 0.37 0.35 16 10 O -0.31 -2.35 9.67 -73.39 -0.71 -3.06 16 11 C 0.12 0.79 6.69 22.51 0.15 0.94 16 12 C -0.20 -0.61 9.04 22.37 0.20 -0.41 16 13 C -0.10 -0.46 8.66 22.26 0.19 -0.27 16 14 C -0.13 -0.65 5.42 -19.85 -0.11 -0.76 16 15 C -0.08 0.04 2.81 71.24 0.20 0.24 16 16 O -0.57 0.12 12.74 -148.98 -1.90 -1.78 16 17 Si 0.77 -2.07 29.78 68.60 2.04 -0.03 16 18 C -0.06 -0.30 9.60 22.25 0.21 -0.08 16 19 C -0.16 -1.08 9.99 22.37 0.22 -0.85 16 20 C -0.16 0.10 7.25 31.12 0.23 0.32 16 21 C 0.10 -0.63 5.27 31.12 0.16 -0.46 16 22 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 23 O -0.56 4.08 12.97 -148.98 -1.93 2.14 16 24 C -0.11 0.39 7.07 31.12 0.22 0.61 16 25 H 0.06 0.41 8.13 -2.39 -0.02 0.40 16 26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.34 8.13 -2.38 -0.02 0.32 16 28 H 0.43 -3.05 8.48 -92.71 -0.79 -3.84 16 29 H 0.12 -0.70 7.65 -2.39 -0.02 -0.72 16 30 H 0.12 -0.75 7.68 -2.39 -0.02 -0.77 16 31 H 0.16 -0.59 6.30 -2.91 -0.02 -0.61 16 32 H 0.13 0.36 4.87 -2.91 -0.01 0.35 16 33 H 0.09 -0.40 7.96 -2.39 -0.02 -0.42 16 34 H 0.40 -4.36 8.74 -74.06 -0.65 -5.01 16 35 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 36 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 37 H 0.15 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.14 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.10 0.03 8.09 -2.39 -0.02 0.02 16 40 H 0.08 0.10 8.14 -2.38 -0.02 0.08 16 41 H 0.40 -5.55 9.12 -74.06 -0.68 -6.23 16 42 H 0.11 -0.68 8.11 -2.39 -0.02 -0.70 16 43 H 0.12 -0.31 7.39 -2.39 -0.02 -0.33 16 Total: 0.00 -29.30 363.55 -0.68 -29.98 By element: Atomic # 1 Polarization: -16.66 SS G_CDS: -0.98 Total: -17.64 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.39 Total: 8.87 kcal Atomic # 7 Polarization: 0.78 SS G_CDS: -2.02 Total: -1.24 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -4.11 Total: -19.95 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.04 Total: -0.03 kcal Total: -29.30 -0.68 -29.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.524 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds