Wall clock time and date at job start Tue Mar 9 2021 12:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 117.00047 * 2 1 4 4 O 1.20824 * 119.99956 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00067 * 179.97438 * 3 2 1 6 6 N 1.46509 * 112.85004 * 35.51338 * 5 3 2 7 7 C 1.34769 * 119.99780 * 66.99133 * 6 5 3 8 8 O 1.21290 * 120.00193 * 354.95139 * 7 6 5 9 9 C 1.50701 * 120.00187 * 174.95448 * 7 6 5 10 10 C 1.53000 * 109.47500 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46956 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47183 * 180.02562 * 11 10 9 13 13 C 1.35896 * 117.00387 * 180.02562 * 12 11 10 14 14 C 1.38706 * 120.05864 * 180.02562 * 13 12 11 15 15 C 1.38166 * 119.94872 * 179.97438 * 14 13 12 16 16 C 1.50704 * 119.97657 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.46739 * 299.99998 * 16 15 14 18 18 Si 1.86304 * 109.47074 * 180.02562 * 16 15 14 19 19 C 1.38247 * 120.05306 * 0.02562 * 15 14 13 20 20 C 1.38285 * 120.11058 * 359.97438 * 19 15 14 21 21 C 1.38119 * 120.05872 * 0.02562 * 20 19 15 22 22 C 1.53780 * 113.69086 * 264.24584 * 5 3 2 23 23 C 1.53789 * 87.07948 * 220.00716 * 22 5 3 24 24 H 1.08999 * 113.69098 * 139.99021 * 23 22 5 25 25 O 1.42897 * 113.61376 * 270.88266 * 23 22 5 26 26 C 1.53777 * 113.61240 * 166.70742 * 5 3 2 27 27 H 1.08996 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46694 * 299.99985 * 1 2 3 29 29 H 1.08994 * 109.47241 * 59.99998 * 1 2 3 30 30 H 0.96993 * 119.99770 * 246.99174 * 6 5 3 31 31 H 1.09001 * 109.47312 * 59.99367 * 9 7 6 32 32 H 1.09000 * 109.46781 * 300.00196 * 9 7 6 33 33 H 1.09002 * 109.46841 * 60.00122 * 10 9 7 34 34 H 1.09000 * 109.47375 * 299.99969 * 10 9 7 35 35 H 1.09002 * 109.46939 * 60.00558 * 11 10 9 36 36 H 1.09000 * 109.47817 * 300.00079 * 11 10 9 37 37 H 1.08004 * 120.02894 * 359.95420 * 14 13 12 38 38 H 1.08996 * 109.46643 * 60.00001 * 16 15 14 39 39 H 0.96705 * 113.99921 * 179.97438 * 17 16 15 40 40 H 1.48503 * 109.99728 * 60.00195 * 18 16 15 41 41 H 1.48501 * 109.99650 * 181.31885 * 18 16 15 42 42 H 1.08002 * 119.94603 * 180.02562 * 19 15 14 43 43 H 1.08006 * 119.97093 * 180.02562 * 20 19 15 44 44 H 1.08004 * 120.03300 * 180.27443 * 21 20 19 45 45 H 1.08997 * 113.61602 * 334.55366 * 22 5 3 46 46 H 1.09000 * 113.61522 * 105.46452 * 22 5 3 47 47 H 0.96700 * 114.00214 * 277.49547 * 25 23 22 48 48 H 1.09000 * 113.61479 * 254.61183 * 26 5 3 49 49 H 1.08998 * 113.61375 * 25.52239 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.1923 0.2071 -0.7832 7 6 4.0357 0.1730 -2.1213 8 8 3.3029 0.9710 -2.6667 9 6 4.7708 -0.8567 -2.9401 10 6 4.4192 -0.6788 -4.4185 11 6 5.1661 -1.7238 -5.2497 12 8 4.8382 -1.5572 -6.6305 13 6 5.4214 -2.4127 -7.5107 14 6 5.1482 -2.3076 -8.8666 15 6 5.7428 -3.1782 -9.7595 16 6 5.4469 -3.0642 -11.2328 17 8 4.0468 -3.2462 -11.4529 18 14 6.3960 -4.3722 -12.1599 19 6 6.6090 -4.1540 -9.3026 20 6 6.8830 -4.2610 -7.9514 21 6 6.2911 -3.3930 -7.0547 22 6 4.1754 1.4485 1.4019 23 6 5.1715 2.4297 0.7614 24 1 5.3799 3.3057 1.3757 25 8 6.3573 1.8020 0.2696 26 6 4.1098 2.6765 -0.3235 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.7195 -0.4753 -0.3390 31 1 4.4788 -1.8554 -2.6152 32 1 5.8448 -0.7300 -2.8038 33 1 4.7111 0.3199 -4.7436 34 1 3.3452 -0.8058 -4.5544 35 1 4.8746 -2.7226 -4.9246 36 1 6.2401 -1.5964 -5.1137 37 1 4.4711 -1.5459 -9.2240 38 1 5.7454 -2.0778 -11.5879 39 1 3.7834 -3.1852 -12.3814 40 1 5.9975 -5.7215 -11.6846 41 1 6.1375 -4.2501 -13.6172 42 1 7.0731 -4.8335 -10.0022 43 1 7.5603 -5.0239 -7.5969 44 1 6.5088 -3.4741 -5.9999 45 1 3.4993 1.9173 2.1169 46 1 4.6426 0.5435 1.7902 47 1 7.0288 1.6442 0.9473 48 1 4.5240 2.7627 -1.3280 49 1 3.4157 3.4809 -0.0801 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:53 Heat of formation + Delta-G solvation = -180.768646 kcal Electronic energy + Delta-G solvation = -32705.687060 eV Core-core repulsion = 27987.163385 eV Total energy + Delta-G solvation = -4718.523675 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.49875 -41.26008 -40.75814 -39.73574 -39.10204 -37.65147 -37.48774 -36.18820 -34.94315 -33.90078 -32.58064 -31.24457 -29.48280 -28.40853 -27.15668 -26.90783 -26.36451 -23.77542 -23.58970 -22.66145 -21.80441 -21.50008 -20.51058 -19.26921 -18.98234 -18.60765 -18.45891 -18.24129 -17.80223 -17.47545 -17.38786 -17.25446 -16.94746 -16.83258 -16.29141 -15.83652 -15.67129 -15.48291 -15.32945 -14.85264 -14.64120 -14.53214 -14.44050 -14.24388 -13.98436 -13.85793 -13.60020 -13.50235 -13.36837 -13.24725 -13.18675 -13.14261 -12.68205 -12.45231 -12.39645 -12.22654 -12.13618 -11.96313 -11.95825 -11.66205 -11.60312 -11.56719 -11.07061 -10.97403 -10.58314 -10.24333 -9.88101 -9.23679 -4.92164 0.22105 0.41668 0.87783 1.27964 1.39056 1.61401 1.72819 1.79805 1.94724 2.28095 2.65129 2.94424 3.14058 3.34764 3.36264 3.52321 3.53614 3.74640 3.78361 3.86540 3.87622 3.98270 4.12278 4.14094 4.15888 4.16623 4.26110 4.28267 4.35134 4.38105 4.41689 4.51487 4.52813 4.55981 4.62776 4.66261 4.69498 4.75056 4.76461 4.85267 4.99206 4.99758 5.14462 5.19821 5.27964 5.31382 5.39141 5.47643 5.74701 6.40104 6.43617 6.52987 6.55335 6.93150 7.15143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.535 6.535 5 C 0.151 3.849 6 N -0.678 5.678 7 C 0.513 3.487 8 O -0.584 6.584 9 C -0.122 4.122 10 C -0.101 4.101 11 C 0.059 3.941 12 O -0.340 6.340 13 C 0.116 3.884 14 C -0.154 4.154 15 C -0.049 4.049 16 C -0.097 4.097 17 O -0.561 6.561 18 Si 0.781 3.219 19 C -0.162 4.162 20 C -0.071 4.071 21 C -0.205 4.205 22 C -0.139 4.139 23 C 0.102 3.898 24 H 0.104 0.896 25 O -0.556 6.556 26 C -0.130 4.130 27 H 0.132 0.868 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.427 0.573 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.395 0.605 40 H -0.295 1.295 41 H -0.286 1.286 42 H 0.147 0.853 43 H 0.163 0.837 44 H 0.157 0.843 45 H 0.115 0.885 46 H 0.124 0.876 47 H 0.404 0.596 48 H 0.066 0.934 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -5.282 6.757 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.307 3.693 4 O -0.423 6.423 5 C 0.061 3.939 6 N -0.333 5.333 7 C 0.302 3.698 8 O -0.463 6.463 9 C -0.161 4.161 10 C -0.139 4.139 11 C -0.016 4.016 12 O -0.254 6.254 13 C 0.071 3.929 14 C -0.173 4.173 15 C -0.049 4.049 16 C -0.204 4.204 17 O -0.371 6.371 18 Si 0.685 3.315 19 C -0.180 4.180 20 C -0.089 4.089 21 C -0.224 4.224 22 C -0.177 4.177 23 C 0.043 3.957 24 H 0.122 0.878 25 O -0.365 6.365 26 C -0.169 4.169 27 H 0.150 0.850 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.267 0.733 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.245 0.755 40 H -0.222 1.222 41 H -0.214 1.214 42 H 0.164 0.836 43 H 0.180 0.820 44 H 0.175 0.825 45 H 0.134 0.866 46 H 0.142 0.858 47 H 0.256 0.744 48 H 0.085 0.915 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.223 -4.991 5.921 11.295 hybrid contribution -1.710 0.473 -0.100 1.777 sum 6.514 -4.518 5.820 9.834 Atomic orbital electron populations 1.23509 0.75310 1.05635 1.02123 1.86501 1.24536 1.32931 1.83289 1.24505 0.92679 0.81322 0.70783 1.90647 1.67368 1.37574 1.46723 1.21324 0.82957 0.91550 0.98063 1.45301 1.53139 1.28829 1.05982 1.21339 0.80784 0.85173 0.82547 1.90768 1.39923 1.43416 1.72219 1.21504 1.03131 0.99359 0.92128 1.21142 1.00561 0.98905 0.93329 1.22987 1.00916 1.00248 0.77410 1.86046 1.66725 1.54100 1.18576 1.19184 0.93578 0.90595 0.89590 1.20320 1.03643 1.02688 0.90687 1.19293 0.96599 0.95128 0.93873 1.25243 0.87329 1.10457 0.97421 1.86555 1.22619 1.94984 1.32908 0.93967 0.88303 0.74382 0.74828 1.21150 1.00691 0.99009 0.97111 1.21308 0.97740 0.97890 0.91958 1.21618 1.00831 0.97641 1.02294 1.24006 0.98832 1.03483 0.91363 1.22453 0.84629 0.95205 0.93454 0.87805 1.86463 1.27534 1.82004 1.40539 1.23435 0.97724 0.94464 1.01228 0.85019 0.91330 0.93418 0.73299 0.85151 0.84930 0.92259 0.92564 0.89830 0.89412 0.86753 0.89120 0.75487 1.22248 1.21350 0.83588 0.81962 0.82550 0.86646 0.85760 0.74413 0.91535 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.56 113.37 1.20 1.29 16 2 O -0.36 -2.53 10.42 -51.46 -0.54 -3.07 16 3 C 0.46 4.38 6.42 71.24 0.46 4.83 16 4 O -0.53 -8.50 15.66 21.97 0.34 -8.15 16 5 C 0.15 0.31 1.00 3.38 0.00 0.32 16 6 N -0.68 1.08 4.53 -423.91 -1.92 -0.84 16 7 C 0.51 1.95 7.31 87.66 0.64 2.59 16 8 O -0.58 -8.85 14.70 -3.06 -0.05 -8.90 16 9 C -0.12 0.58 5.70 29.85 0.17 0.75 16 10 C -0.10 -0.20 4.87 30.59 0.15 -0.05 16 11 C 0.06 -0.05 4.74 71.98 0.34 0.29 16 12 O -0.34 -2.75 10.14 -92.38 -0.94 -3.69 16 13 C 0.12 0.83 6.69 22.51 0.15 0.98 16 14 C -0.15 -1.43 9.55 22.36 0.21 -1.22 16 15 C -0.05 -0.28 5.42 -19.88 -0.11 -0.39 16 16 C -0.10 -0.25 2.81 71.24 0.20 -0.05 16 17 O -0.56 -3.30 12.74 -148.98 -1.90 -5.20 16 18 Si 0.78 -0.80 29.79 68.60 2.04 1.25 16 19 C -0.16 -0.27 8.67 22.28 0.19 -0.08 16 20 C -0.07 0.05 10.04 22.25 0.22 0.27 16 21 C -0.21 -0.22 9.04 22.37 0.20 -0.01 16 22 C -0.14 0.94 7.20 31.12 0.22 1.16 16 23 C 0.10 -0.56 5.28 31.12 0.16 -0.40 16 24 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 25 O -0.56 3.83 13.09 -148.98 -1.95 1.88 16 26 C -0.13 -0.50 6.67 31.12 0.21 -0.30 16 27 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 29 H 0.05 0.32 8.13 -2.39 -0.02 0.30 16 30 H 0.43 -3.98 8.67 -92.71 -0.80 -4.79 16 31 H 0.13 -1.39 8.14 -2.39 -0.02 -1.41 16 32 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 33 H 0.06 0.40 8.10 -2.39 -0.02 0.38 16 34 H 0.06 0.40 8.10 -2.39 -0.02 0.38 16 35 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 36 H 0.09 -0.47 7.66 -2.39 -0.02 -0.49 16 37 H 0.11 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.09 -0.06 7.96 -2.39 -0.02 -0.08 16 39 H 0.39 -1.06 8.74 -74.05 -0.65 -1.71 16 40 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 41 H -0.29 -0.83 7.11 99.48 0.71 -0.13 16 42 H 0.15 -0.42 4.87 -2.91 -0.01 -0.44 16 43 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 44 H 0.16 -0.81 6.30 -2.91 -0.02 -0.83 16 45 H 0.12 -0.82 8.10 -2.39 -0.02 -0.83 16 46 H 0.12 -1.54 8.09 -2.39 -0.02 -1.56 16 47 H 0.40 -6.53 9.12 -74.06 -0.68 -7.21 16 48 H 0.07 0.62 7.41 -2.39 -0.02 0.61 16 49 H 0.11 0.63 7.35 -2.39 -0.02 0.61 16 Total: 0.00 -36.57 410.33 -1.34 -37.92 By element: Atomic # 1 Polarization: -20.11 SS G_CDS: -1.08 Total: -21.19 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 4.63 Total: 9.99 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -1.92 Total: -0.84 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -5.02 Total: -27.12 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.04 Total: 1.25 kcal Total: -36.57 -1.34 -37.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.852 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds