Wall clock time and date at job start Tue Mar 9 2021 13:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00164 * 2 1 4 4 O 1.20823 * 120.00173 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00005 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.84656 * 35.51741 * 5 3 2 7 7 C 1.34775 * 120.00255 * 66.99341 * 6 5 3 8 8 O 1.21279 * 119.99794 * 354.94647 * 7 6 5 9 9 C 1.50702 * 120.00087 * 174.94825 * 7 6 5 10 10 O 1.42904 * 109.46796 * 179.97438 * 9 7 6 11 11 C 1.35994 * 116.99442 * 179.97438 * 10 9 7 12 12 C 1.39159 * 120.07150 * 180.02562 * 11 10 9 13 13 O 1.36000 * 120.07011 * 359.75343 * 12 11 10 14 14 C 1.42901 * 116.99607 * 179.97438 * 13 12 11 15 15 C 1.38565 * 119.85477 * 180.02562 * 12 11 10 16 16 C 1.38242 * 119.99852 * 0.02562 * 15 12 11 17 17 C 1.50700 * 119.92253 * 180.02562 * 16 15 12 18 18 O 1.42907 * 109.46658 * 254.97228 * 17 16 15 19 19 Si 1.86298 * 109.47473 * 14.97259 * 17 16 15 20 20 C 1.38251 * 120.14604 * 359.97438 * 16 15 12 21 21 N 1.48008 * 119.92561 * 179.97438 * 20 16 15 22 22 O 1.21800 * 120.00189 * 180.02562 * 21 20 16 23 23 O 1.21806 * 119.99674 * 0.02562 * 21 20 16 24 24 C 1.38243 * 120.14756 * 0.02562 * 20 16 15 25 25 C 1.53782 * 113.69357 * 264.25042 * 5 3 2 26 26 C 1.53778 * 87.08023 * 220.00851 * 25 5 3 27 27 H 1.09001 * 113.69453 * 139.99209 * 26 25 5 28 28 O 1.42901 * 113.61333 * 270.88093 * 26 25 5 29 29 C 1.53777 * 113.61275 * 166.71258 * 5 3 2 30 30 H 1.08996 * 109.47603 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47136 * 299.99669 * 1 2 3 32 32 H 1.08993 * 109.47143 * 59.99552 * 1 2 3 33 33 H 0.97001 * 119.99697 * 246.98642 * 6 5 3 34 34 H 1.09005 * 109.46798 * 60.00477 * 9 7 6 35 35 H 1.08994 * 109.46968 * 299.99919 * 9 7 6 36 36 H 1.08995 * 109.46908 * 60.00175 * 14 13 12 37 37 H 1.09007 * 109.46843 * 179.97438 * 14 13 12 38 38 H 1.08989 * 109.47085 * 299.99279 * 14 13 12 39 39 H 1.08004 * 119.99872 * 179.97438 * 15 12 11 40 40 H 1.09001 * 109.46845 * 134.97533 * 17 16 15 41 41 H 0.96697 * 113.99660 * 180.02562 * 18 17 16 42 42 H 1.48501 * 110.00047 * 178.68433 * 19 17 16 43 43 H 1.48503 * 109.99734 * 299.99907 * 19 17 16 44 44 H 1.08001 * 119.99691 * 180.02562 * 24 20 16 45 45 H 1.09004 * 113.60932 * 334.55624 * 25 5 3 46 46 H 1.08991 * 113.61683 * 105.45882 * 25 5 3 47 47 H 0.96697 * 114.00012 * 277.49478 * 28 26 25 48 48 H 1.09001 * 113.61041 * 254.61349 * 29 5 3 49 49 H 1.08994 * 113.61875 * 25.51885 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1922 0.2070 -0.7833 7 6 4.0356 0.1729 -2.1215 8 8 3.3029 0.9709 -2.6667 9 6 4.7707 -0.8568 -2.9402 10 8 4.4423 -0.6904 -4.3210 11 6 5.0263 -1.5462 -5.2019 12 6 4.7521 -1.4413 -6.5622 13 8 3.8956 -0.4858 -7.0129 14 6 3.6619 -0.4367 -8.4219 15 6 5.3492 -2.3160 -7.4557 16 6 6.2148 -3.2905 -6.9951 17 6 6.8637 -4.2405 -7.9684 18 8 6.2356 -5.5208 -7.8750 19 14 6.6742 -3.5808 -9.7003 20 6 6.4872 -3.3948 -5.6437 21 7 7.4142 -4.4403 -5.1558 22 8 7.6548 -4.5337 -3.9655 23 8 7.9365 -5.2074 -5.9448 24 6 5.8948 -2.5253 -4.7469 25 6 4.1755 1.4483 1.4019 26 6 5.1715 2.4294 0.7615 27 1 5.3800 3.3053 1.3758 28 8 6.3574 1.8018 0.2696 29 6 4.1099 2.6764 -0.3233 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.7194 -0.4754 -0.3391 34 1 4.4785 -1.8554 -2.6154 35 1 5.8447 -0.7300 -2.8040 36 1 3.2424 -1.3863 -8.7538 37 1 2.9614 0.3678 -8.6461 38 1 4.6032 -0.2542 -8.9401 39 1 5.1377 -2.2369 -8.5119 40 1 7.9230 -4.3373 -7.7303 41 1 6.6037 -6.1841 -8.4746 42 1 7.3376 -4.4926 -10.6666 43 1 5.2343 -3.4443 -10.0371 44 1 6.1097 -2.6086 -3.6918 45 1 3.4993 1.9170 2.1169 46 1 4.6426 0.5432 1.7901 47 1 7.0288 1.6439 0.9473 48 1 4.5240 2.7626 -1.3279 49 1 3.4159 3.4808 -0.0800 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12808048_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:08 Heat of formation + Delta-G solvation = -178.116926 kcal Electronic energy + Delta-G solvation = -41366.600787 eV Core-core repulsion = 35654.031091 eV Total energy + Delta-G solvation = -5712.569696 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.20015 -42.50621 -42.00094 -40.74563 -40.12005 -39.33475 -39.00202 -37.58993 -37.43314 -37.12258 -36.29466 -34.18891 -32.74230 -32.51191 -30.14672 -29.15901 -28.86511 -27.83358 -27.27066 -26.59353 -25.67341 -23.94557 -23.06797 -22.71212 -22.07674 -20.73089 -20.46705 -19.68741 -19.45860 -19.21586 -18.82954 -18.81005 -18.36124 -18.19479 -18.00525 -17.80559 -17.70465 -17.64164 -17.22443 -16.90091 -16.78930 -16.49847 -15.99833 -15.76071 -15.65336 -15.33416 -15.24837 -14.87509 -14.74753 -14.36918 -14.28862 -14.08229 -13.92911 -13.86615 -13.66085 -13.48447 -13.31047 -13.10849 -13.05498 -12.66266 -12.58087 -12.49805 -12.43403 -12.30217 -12.20609 -12.07049 -11.93071 -11.86605 -11.74893 -11.57731 -11.28074 -10.99448 -10.47597 -10.41891 -10.29558 -9.46502 -5.17608 -1.16320 -0.43139 0.37011 0.47267 0.95898 1.03167 1.19000 1.33792 1.37961 1.73334 1.73632 1.77941 1.92548 2.16682 2.74514 2.86890 3.02615 3.10627 3.14807 3.27528 3.36474 3.43807 3.47099 3.55646 3.69662 3.73312 3.77098 3.87899 3.94060 3.99725 4.00397 4.08040 4.18319 4.19979 4.27790 4.30579 4.33372 4.39592 4.42697 4.55235 4.61551 4.63103 4.63678 4.74300 4.86050 5.15080 5.37879 5.48366 5.51092 5.97603 6.18047 6.35857 6.43226 6.71034 6.81914 6.96377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.471 3.529 4 O -0.494 6.494 5 C 0.165 3.835 6 N -0.689 5.689 7 C 0.525 3.475 8 O -0.501 6.501 9 C 0.035 3.965 10 O -0.265 6.265 11 C 0.110 3.890 12 C 0.171 3.829 13 O -0.284 6.284 14 C 0.014 3.986 15 C -0.180 4.180 16 C 0.008 3.992 17 C -0.085 4.085 18 O -0.523 6.523 19 Si 0.679 3.321 20 C -0.025 4.025 21 N 0.037 4.963 22 O -0.172 6.172 23 O -0.140 6.140 24 C -0.118 4.118 25 C -0.156 4.156 26 C 0.085 3.915 27 H 0.087 0.913 28 O -0.545 6.545 29 C -0.116 4.116 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.412 0.588 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.163 0.837 40 H 0.104 0.896 41 H 0.388 0.612 42 H -0.249 1.249 43 H -0.252 1.252 44 H 0.167 0.833 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.385 0.615 48 H 0.096 0.904 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 1.387 1.269 3.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.311 3.689 4 O -0.380 6.380 5 C 0.076 3.924 6 N -0.346 5.346 7 C 0.310 3.690 8 O -0.374 6.374 9 C -0.043 4.043 10 O -0.176 6.176 11 C 0.063 3.937 12 C 0.122 3.878 13 O -0.195 6.195 14 C -0.080 4.080 15 C -0.199 4.199 16 C 0.007 3.993 17 C -0.194 4.194 18 O -0.331 6.331 19 Si 0.579 3.421 20 C -0.109 4.109 21 N 0.556 4.444 22 O -0.384 6.384 23 O -0.359 6.359 24 C -0.137 4.137 25 C -0.194 4.194 26 C 0.026 3.974 27 H 0.104 0.896 28 O -0.351 6.351 29 C -0.154 4.154 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.180 0.820 40 H 0.121 0.879 41 H 0.237 0.763 42 H -0.174 1.174 43 H -0.177 1.177 44 H 0.185 0.815 45 H 0.132 0.868 46 H 0.115 0.885 47 H 0.233 0.767 48 H 0.114 0.886 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.300 3.301 -0.210 3.321 hybrid contribution 0.590 -2.216 0.906 2.466 sum 0.890 1.085 0.696 1.567 Atomic orbital electron populations 1.23326 0.75939 1.03952 1.02764 1.86500 1.23718 1.33122 1.83592 1.23670 0.91240 0.81791 0.72194 1.90684 1.66173 1.36409 1.44690 1.21095 0.84743 0.91069 0.95470 1.45151 1.54212 1.29417 1.05787 1.19863 0.81950 0.85087 0.82133 1.90832 1.35929 1.39801 1.70800 1.22584 1.01278 0.99868 0.80581 1.86328 1.64660 1.51560 1.15093 1.17824 0.95968 0.92285 0.87635 1.18415 0.90440 0.89164 0.89762 1.86340 1.58131 1.48822 1.26223 1.23394 1.02750 1.04022 0.77879 1.21033 1.00593 0.97380 1.00906 1.18847 0.94457 0.94861 0.91180 1.24993 1.00215 0.86584 1.07592 1.86530 1.61837 1.19577 1.65160 0.95397 0.82480 0.89751 0.74465 1.20369 1.01570 0.95475 0.93527 1.43296 0.99845 1.00616 1.00687 1.94541 1.66645 1.77572 0.99607 1.94495 1.51529 1.37522 1.52334 1.20770 0.96994 0.94218 1.01753 1.24013 0.99584 1.02515 0.93294 1.22632 0.84992 0.94433 0.95378 0.89566 1.86502 1.27256 1.82078 1.39225 1.23441 0.96216 0.94135 1.01641 0.87910 0.91698 0.91680 0.75141 0.88145 0.87735 0.91942 0.86790 0.91444 0.82004 0.87865 0.76334 1.17355 1.17682 0.81536 0.86848 0.88472 0.76661 0.88589 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 101.05 1.07 1.10 16 2 O -0.35 -0.98 10.41 -39.25 -0.41 -1.38 16 3 C 0.47 1.63 6.42 36.01 0.23 1.86 16 4 O -0.49 -2.99 15.66 -18.75 -0.29 -3.28 16 5 C 0.17 0.06 1.00 -132.16 -0.13 -0.08 16 6 N -0.69 0.62 4.53 -47.92 -0.22 0.40 16 7 C 0.53 0.95 7.39 -10.99 -0.08 0.87 16 8 O -0.50 -3.31 15.22 -14.35 -0.22 -3.53 16 9 C 0.04 -0.03 5.22 36.01 0.19 0.16 16 10 O -0.26 -0.68 9.45 -47.35 -0.45 -1.13 16 11 C 0.11 0.16 6.70 -39.12 -0.26 -0.10 16 12 C 0.17 0.21 6.70 -39.12 -0.26 -0.05 16 13 O -0.28 -0.45 10.28 -34.24 -0.35 -0.80 16 14 C 0.01 -0.03 9.81 101.05 0.99 0.96 16 15 C -0.18 0.01 7.64 -39.46 -0.30 -0.29 16 16 C 0.01 0.01 5.29 -104.62 -0.55 -0.54 16 17 C -0.08 -0.01 1.73 36.01 0.06 0.05 16 18 O -0.52 -0.73 11.77 -55.49 -0.65 -1.39 16 19 Si 0.68 -1.34 30.19 -169.99 -5.13 -6.48 16 20 C -0.03 -0.06 6.85 -79.95 -0.55 -0.61 16 21 N 0.04 0.16 4.45 33.96 0.15 0.31 16 22 O -0.17 -0.83 18.44 -29.46 -0.54 -1.37 16 23 O -0.14 -0.65 14.62 -35.97 -0.53 -1.18 16 24 C -0.12 -0.08 8.54 -39.46 -0.34 -0.42 16 25 C -0.16 0.50 7.20 -25.92 -0.19 0.31 16 26 C 0.09 -0.23 5.28 -25.92 -0.14 -0.37 16 27 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 28 O -0.54 1.59 13.09 -35.23 -0.46 1.13 16 29 C -0.12 -0.07 6.67 -25.92 -0.17 -0.24 16 30 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 31 H 0.06 0.02 8.13 -51.93 -0.42 -0.41 16 32 H 0.06 0.12 8.13 -51.93 -0.42 -0.30 16 33 H 0.41 -1.73 8.67 -40.82 -0.35 -2.08 16 34 H 0.10 -0.34 7.66 -51.93 -0.40 -0.74 16 35 H 0.10 -0.36 7.66 -51.93 -0.40 -0.76 16 36 H 0.06 -0.20 7.65 -51.93 -0.40 -0.59 16 37 H 0.11 -0.42 8.14 -51.93 -0.42 -0.85 16 38 H 0.07 -0.30 7.67 -51.94 -0.40 -0.70 16 39 H 0.16 -0.34 3.13 -52.48 -0.16 -0.51 16 40 H 0.10 -0.02 6.07 -51.93 -0.32 -0.33 16 41 H 0.39 -0.95 8.74 45.56 0.40 -0.55 16 42 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 43 H -0.25 0.05 6.74 56.52 0.38 0.44 16 44 H 0.17 -0.26 5.85 -52.49 -0.31 -0.57 16 45 H 0.11 -0.40 8.10 -51.93 -0.42 -0.82 16 46 H 0.10 -0.49 8.09 -51.93 -0.42 -0.91 16 47 H 0.39 -2.69 9.12 45.56 0.42 -2.28 16 48 H 0.10 0.26 7.41 -51.93 -0.38 -0.12 16 49 H 0.12 0.11 7.35 -51.93 -0.38 -0.27 16 LS Contribution 418.85 15.07 6.31 6.31 Total: 0.00 -15.05 418.85 -8.08 -23.13 By element: Atomic # 1 Polarization: -8.49 SS G_CDS: -4.86 Total: -13.35 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.43 Total: 2.61 kcal Atomic # 7 Polarization: 0.78 SS G_CDS: -0.07 Total: 0.71 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -3.90 Total: -12.94 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: -5.13 Total: -6.48 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -15.05 -8.08 -23.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.986 kcal (2) G-P(sol) polarization free energy of solvation -15.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds