Wall clock time and date at job start Tue Mar 9 2021 13:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99878 * 2 1 4 4 O 1.20834 * 120.00211 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00203 * 180.02562 * 3 2 1 6 6 N 1.46501 * 112.84672 * 35.51566 * 5 3 2 7 7 C 1.34772 * 119.99877 * 66.99688 * 6 5 3 8 8 O 1.21277 * 120.00448 * 354.94909 * 7 6 5 9 9 C 1.50702 * 119.99782 * 174.95174 * 7 6 5 10 10 O 1.42906 * 109.47123 * 179.97438 * 9 7 6 11 11 C 1.35898 * 116.99972 * 179.97438 * 10 9 7 12 12 C 1.38708 * 120.05498 * 180.25197 * 11 10 9 13 13 C 1.38164 * 119.94794 * 180.25366 * 12 11 10 14 14 C 1.50694 * 119.97841 * 179.74684 * 13 12 11 15 15 O 1.42905 * 109.46880 * 64.72456 * 14 13 12 16 16 Si 1.86301 * 109.47288 * 184.72499 * 14 13 12 17 17 C 1.38245 * 120.04817 * 359.47328 * 13 12 11 18 18 C 1.38285 * 120.11909 * 0.27579 * 17 13 12 19 19 C 1.38132 * 120.05039 * 359.97438 * 18 17 13 20 20 C 1.53783 * 113.69373 * 264.25017 * 5 3 2 21 21 C 1.53783 * 87.08185 * 220.00686 * 20 5 3 22 22 H 1.08996 * 113.69088 * 139.98791 * 21 20 5 23 23 O 1.42903 * 113.60989 * 270.88195 * 21 20 5 24 24 C 1.53780 * 87.08310 * 25.42848 * 21 20 5 25 25 H 1.08995 * 109.46781 * 59.99337 * 1 2 3 26 26 H 1.08997 * 109.46567 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46570 * 299.99928 * 1 2 3 28 28 H 0.97003 * 119.99898 * 246.98637 * 6 5 3 29 29 H 1.08997 * 109.47590 * 59.99833 * 9 7 6 30 30 H 1.08999 * 109.47315 * 299.99488 * 9 7 6 31 31 H 1.08011 * 120.03055 * 359.97438 * 12 11 10 32 32 H 1.09000 * 109.47115 * 304.72535 * 14 13 12 33 33 H 0.96696 * 114.00064 * 60.00052 * 15 14 13 34 34 H 1.48498 * 109.99963 * 58.68118 * 16 14 13 35 35 H 1.48507 * 109.99928 * 180.02562 * 16 14 13 36 36 H 1.08005 * 119.94303 * 180.25060 * 17 13 12 37 37 H 1.07993 * 119.97806 * 179.97438 * 18 17 13 38 38 H 1.07994 * 120.02626 * 179.97438 * 19 18 17 39 39 H 1.09005 * 113.61150 * 334.55283 * 20 5 3 40 40 H 1.09001 * 113.61896 * 105.45649 * 20 5 3 41 41 H 0.96698 * 113.99887 * 277.49022 * 23 21 20 42 42 H 1.08994 * 113.61726 * 220.02235 * 24 21 20 43 43 H 1.09001 * 113.61190 * 89.11546 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1916 0.2075 -0.7853 7 6 4.0339 0.1740 -2.1234 8 8 3.3009 0.9722 -2.6678 9 6 4.7685 -0.8553 -2.9431 10 8 4.4391 -0.6884 -4.3236 11 6 5.0220 -1.5433 -5.2047 12 6 4.7510 -1.4348 -6.5607 13 6 5.3408 -2.3084 -7.4540 14 6 5.0424 -2.1948 -8.9268 15 8 5.5367 -0.9471 -9.4180 16 14 5.8706 -3.5929 -9.8379 17 6 6.2088 -3.2831 -6.9984 18 6 6.4847 -3.3901 -5.6476 19 6 5.8936 -2.5224 -4.7500 20 6 4.1766 1.4479 1.4003 21 6 5.1721 2.4294 0.7595 22 1 5.3809 3.3051 1.3741 23 8 6.3575 1.8019 0.2665 24 6 4.1097 2.6767 -0.3244 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 4.7193 -0.4751 -0.3419 29 1 4.4767 -1.8541 -2.6185 30 1 5.8426 -0.7287 -2.8077 31 1 4.0760 -0.6708 -6.9177 32 1 3.9651 -2.2461 -9.0843 33 1 6.4908 -0.8322 -9.3104 34 1 5.3887 -4.8963 -9.3143 35 1 5.5845 -3.4918 -11.2916 36 1 6.6720 -3.9625 -7.6986 37 1 7.1628 -4.1527 -5.2941 38 1 6.1090 -2.6066 -3.6951 39 1 3.5010 1.9164 2.1161 40 1 4.6441 0.5427 1.7879 41 1 7.0296 1.6438 0.9436 42 1 4.5229 2.7634 -1.3292 43 1 3.4157 3.4810 -0.0802 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:21 Heat of formation + Delta-G solvation = -166.689487 kcal Electronic energy + Delta-G solvation = -29589.162882 eV Core-core repulsion = 25182.324963 eV Total energy + Delta-G solvation = -4406.837919 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57098 -41.46403 -40.68717 -39.78828 -38.86274 -37.67521 -37.23857 -36.20974 -34.19493 -32.47650 -31.66041 -29.78651 -28.98754 -27.17860 -26.90074 -26.40246 -23.68239 -23.15303 -22.54517 -21.70238 -20.59250 -19.46076 -19.18039 -18.79364 -18.37276 -17.94859 -17.57854 -17.47083 -17.39516 -17.20203 -16.91294 -16.66098 -16.18277 -15.73817 -15.56358 -15.27250 -15.13101 -14.86744 -14.68255 -14.47942 -14.19759 -14.05140 -13.92675 -13.60317 -13.41104 -13.37681 -13.20430 -12.93059 -12.62179 -12.47328 -12.16532 -12.15540 -12.02267 -11.97666 -11.70647 -11.58956 -11.12460 -11.04740 -10.49836 -10.35170 -9.94160 -9.29681 -4.99051 0.20165 0.38312 0.82050 1.19988 1.27310 1.38652 1.64317 1.66042 1.97133 2.45294 2.66815 2.91810 3.09286 3.30729 3.38371 3.50586 3.51865 3.67720 3.74530 3.84615 3.97178 4.04703 4.12671 4.12924 4.15453 4.23860 4.25005 4.33784 4.48222 4.50555 4.54634 4.63082 4.65099 4.70851 4.74693 4.80697 4.97161 5.17253 5.18643 5.24091 5.36556 5.44385 5.68890 6.18913 6.36797 6.48468 6.74422 6.93195 6.97839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.532 6.532 5 C 0.153 3.847 6 N -0.669 5.669 7 C 0.516 3.484 8 O -0.567 6.567 9 C 0.044 3.956 10 O -0.325 6.325 11 C 0.113 3.887 12 C -0.152 4.152 13 C -0.085 4.085 14 C -0.089 4.089 15 O -0.559 6.559 16 Si 0.799 3.201 17 C -0.155 4.155 18 C -0.068 4.068 19 C -0.201 4.201 20 C -0.136 4.136 21 C 0.103 3.897 22 H 0.107 0.893 23 O -0.558 6.558 24 C -0.133 4.133 25 H 0.046 0.954 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.430 0.570 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.396 0.604 34 H -0.280 1.280 35 H -0.302 1.302 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.405 0.595 42 H 0.064 0.936 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 -7.036 8.628 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.421 6.421 5 C 0.064 3.936 6 N -0.326 5.326 7 C 0.303 3.697 8 O -0.445 6.445 9 C -0.033 4.033 10 O -0.239 6.239 11 C 0.068 3.932 12 C -0.171 4.171 13 C -0.085 4.085 14 C -0.197 4.197 15 O -0.367 6.367 16 Si 0.704 3.296 17 C -0.172 4.172 18 C -0.086 4.086 19 C -0.219 4.219 20 C -0.174 4.174 21 C 0.043 3.957 22 H 0.124 0.876 23 O -0.367 6.367 24 C -0.171 4.171 25 H 0.065 0.935 26 H 0.150 0.850 27 H 0.089 0.911 28 H 0.271 0.729 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.246 0.754 34 H -0.206 1.206 35 H -0.230 1.230 36 H 0.170 0.830 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.257 0.743 42 H 0.083 0.917 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.662 -6.602 7.016 12.310 hybrid contribution -1.120 0.458 0.640 1.369 sum 6.543 -6.144 7.656 11.797 Atomic orbital electron populations 1.23522 0.75221 1.05674 1.02169 1.86495 1.24615 1.32869 1.83272 1.24461 0.92635 0.81401 0.70919 1.90656 1.67297 1.37533 1.46589 1.21362 0.82975 0.91164 0.98129 1.45015 1.53327 1.29284 1.05001 1.20703 0.81154 0.84889 0.82960 1.90795 1.38946 1.42515 1.72208 1.22648 1.01900 0.99460 0.79305 1.86118 1.66633 1.54377 1.16776 1.19204 0.94032 0.90691 0.89301 1.20292 1.04137 1.02150 0.90568 1.20206 0.97119 0.95598 0.95625 1.25472 1.03605 0.97272 0.93337 1.86482 1.30058 1.36810 1.83330 0.93531 0.88903 0.72671 0.74543 1.21225 0.99597 0.99147 0.97248 1.21367 0.97525 0.97706 0.92014 1.21650 1.00315 0.97358 1.02611 1.24028 0.98748 1.03607 0.91002 1.22461 0.84592 0.95331 0.93308 0.87571 1.86463 1.27578 1.82009 1.40636 1.23476 0.97905 0.94420 1.01292 0.93510 0.84994 0.91141 0.72915 0.85455 0.85205 0.87483 0.88462 0.75432 1.20620 1.23040 0.83003 0.81614 0.82031 0.86321 0.85415 0.74295 0.91717 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.56 113.37 1.20 1.29 16 2 O -0.36 -2.49 10.41 -51.38 -0.54 -3.03 16 3 C 0.46 4.31 6.42 71.23 0.46 4.77 16 4 O -0.53 -8.39 15.66 21.94 0.34 -8.05 16 5 C 0.15 0.28 1.00 3.38 0.00 0.28 16 6 N -0.67 1.02 4.53 -423.92 -1.92 -0.90 16 7 C 0.52 3.02 7.39 87.66 0.65 3.66 16 8 O -0.57 -10.32 15.22 16.02 0.24 -10.08 16 9 C 0.04 -0.04 5.22 71.24 0.37 0.33 16 10 O -0.33 -2.90 9.67 -73.37 -0.71 -3.61 16 11 C 0.11 0.63 6.69 22.50 0.15 0.78 16 12 C -0.15 -1.24 9.62 22.36 0.22 -1.02 16 13 C -0.08 -0.26 5.35 -19.88 -0.11 -0.37 16 14 C -0.09 -0.24 2.80 71.23 0.20 -0.04 16 15 O -0.56 -2.34 12.83 -148.98 -1.91 -4.25 16 16 Si 0.80 -1.36 29.80 68.60 2.04 0.69 16 17 C -0.15 0.33 8.67 22.28 0.19 0.53 16 18 C -0.07 0.30 10.04 22.26 0.22 0.53 16 19 C -0.20 0.45 9.04 22.37 0.20 0.65 16 20 C -0.14 1.05 7.20 31.12 0.22 1.27 16 21 C 0.10 -0.63 5.28 31.12 0.16 -0.46 16 22 H 0.11 -1.03 8.14 -2.39 -0.02 -1.05 16 23 O -0.56 4.14 13.09 -148.98 -1.95 2.19 16 24 C -0.13 -0.50 6.67 31.12 0.21 -0.30 16 25 H 0.05 0.32 8.13 -2.39 -0.02 0.31 16 26 H 0.13 -0.43 8.14 -2.39 -0.02 -0.44 16 27 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 28 H 0.43 -4.42 8.67 -92.71 -0.80 -5.22 16 29 H 0.13 -1.01 7.66 -2.39 -0.02 -1.03 16 30 H 0.13 -0.99 7.66 -2.39 -0.02 -1.01 16 31 H 0.11 1.31 8.06 -2.90 -0.02 1.29 16 32 H 0.10 0.51 7.96 -2.39 -0.02 0.49 16 33 H 0.40 -1.86 8.70 -74.06 -0.64 -2.51 16 34 H -0.28 -0.56 7.11 99.48 0.71 0.14 16 35 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 36 H 0.15 -1.13 4.90 -2.91 -0.01 -1.14 16 37 H 0.17 -1.86 8.06 -2.91 -0.02 -1.88 16 38 H 0.16 -1.52 6.30 -2.91 -0.02 -1.54 16 39 H 0.12 -0.97 8.10 -2.38 -0.02 -0.99 16 40 H 0.13 -1.76 8.09 -2.39 -0.02 -1.78 16 41 H 0.41 -6.85 9.12 -74.06 -0.68 -7.53 16 42 H 0.06 0.64 7.41 -2.39 -0.02 0.62 16 43 H 0.11 0.62 7.35 -2.39 -0.02 0.60 16 Total: 0.00 -37.79 367.95 -1.04 -38.83 By element: Atomic # 1 Polarization: -22.69 SS G_CDS: -1.00 Total: -23.69 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 4.35 Total: 11.89 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -1.92 Total: -0.90 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -4.52 Total: -26.82 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.04 Total: 0.69 kcal Total: -37.79 -1.04 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.858 kcal (2) G-P(sol) polarization free energy of solvation -37.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds