Wall clock time and date at job start Tue Mar 9 2021 13:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20825 * 119.99807 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00179 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.85273 * 35.51101 * 5 3 2 7 7 C 1.34774 * 119.99415 * 66.99461 * 6 5 3 8 8 O 1.21656 * 120.00489 * 354.94952 * 7 6 5 9 9 C 1.46998 * 119.99630 * 175.23190 * 7 6 5 10 10 C 1.35808 * 125.13833 * 179.44344 * 9 7 6 11 11 C 1.46254 * 106.09090 * 179.89141 * 10 9 7 12 12 C 1.39775 * 134.15682 * 180.13396 * 11 10 9 13 13 C 1.50700 * 120.09288 * 0.26576 * 12 11 10 14 14 O 1.42906 * 109.46821 * 74.98349 * 13 12 11 15 15 Si 1.86295 * 109.47243 * 194.98265 * 13 12 11 16 16 C 1.36624 * 119.81239 * 180.25300 * 12 11 10 17 17 C 1.38769 * 120.50012 * 359.97438 * 16 12 11 18 18 C 1.38261 * 120.67236 * 0.02562 * 17 16 12 19 19 O 1.35963 * 120.11916 * 180.02562 * 18 17 16 20 20 C 1.42899 * 117.00319 * 359.97438 * 19 18 17 21 21 C 1.39448 * 119.76065 * 359.97438 * 18 17 16 22 22 O 1.34778 * 133.24195 * 180.02562 * 21 18 17 23 23 C 1.53791 * 113.68931 * 264.24632 * 5 3 2 24 24 C 1.53785 * 87.07858 * 220.00853 * 23 5 3 25 25 H 1.08999 * 113.61353 * 139.98025 * 24 23 5 26 26 O 1.42904 * 113.61298 * 270.88168 * 24 23 5 27 27 C 1.53780 * 87.08349 * 25.43303 * 24 23 5 28 28 H 1.08996 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46807 * 299.99884 * 1 2 3 30 30 H 1.09005 * 109.46883 * 59.99917 * 1 2 3 31 31 H 0.96995 * 120.00462 * 246.99736 * 6 5 3 32 32 H 1.08004 * 126.95873 * 0.02562 * 10 9 7 33 33 H 1.09003 * 109.47362 * 314.98578 * 13 12 11 34 34 H 0.96700 * 114.00128 * 60.00033 * 14 13 12 35 35 H 1.48501 * 110.00301 * 58.68229 * 15 13 12 36 36 H 1.48502 * 110.00030 * 180.02562 * 15 13 12 37 37 H 1.08001 * 119.75451 * 179.97438 * 16 12 11 38 38 H 1.08001 * 119.66738 * 179.97438 * 17 16 12 39 39 H 1.09006 * 109.46891 * 300.00231 * 20 19 18 40 40 H 1.09002 * 109.47333 * 59.99433 * 20 19 18 41 41 H 1.09003 * 109.47591 * 179.97438 * 20 19 18 42 42 H 1.08998 * 113.61311 * 334.55100 * 23 5 3 43 43 H 1.09000 * 113.61227 * 105.46231 * 23 5 3 44 44 H 0.96702 * 114.00035 * 277.50028 * 26 24 23 45 45 H 1.09000 * 113.61264 * 220.02088 * 27 24 23 46 46 H 1.08998 * 113.69142 * 89.12679 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1917 0.2074 -0.7852 7 6 4.0340 0.1739 -2.1233 8 8 3.2987 0.9745 -2.6694 9 6 4.7458 -0.8341 -2.9221 10 6 4.6555 -0.9692 -4.2705 11 6 5.5284 -2.0877 -4.6252 12 6 5.8693 -2.7135 -5.8276 13 6 5.2824 -2.2248 -7.1267 14 8 5.9197 -1.0039 -7.5079 15 14 5.5528 -3.5065 -8.4514 16 6 6.7364 -3.7694 -5.8219 17 6 7.2825 -4.2258 -4.6306 18 6 6.9594 -3.6219 -3.4295 19 8 7.5015 -4.0780 -2.2690 20 6 8.3982 -5.1866 -2.3634 21 6 6.0764 -2.5428 -3.4128 22 8 5.5833 -1.7684 -2.4260 23 6 4.1765 1.4479 1.4004 24 6 5.1721 2.4294 0.7596 25 1 5.3798 3.3047 1.3750 26 8 6.3576 1.8019 0.2666 27 6 4.1096 2.6767 -0.3244 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.7192 -0.4752 -0.3418 32 1 4.0613 -0.3702 -4.9447 33 1 4.2134 -2.0527 -7.0005 34 1 6.8747 -1.0827 -7.6380 35 1 4.9220 -4.7903 -8.0525 36 1 4.9789 -3.0362 -9.7378 37 1 6.9989 -4.2525 -6.7515 38 1 7.9663 -5.0617 -4.6416 39 1 7.8769 -6.0395 -2.7983 40 1 9.2441 -4.9170 -2.9957 41 1 8.7578 -5.4489 -1.3684 42 1 3.5010 1.9164 2.1161 43 1 4.6440 0.5427 1.7879 44 1 7.0296 1.6438 0.9438 45 1 4.5230 2.7633 -1.3292 46 1 3.4151 3.4809 -0.0815 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:45 Heat of formation + Delta-G solvation = -157.365242 kcal Electronic energy + Delta-G solvation = -35893.875349 eV Core-core repulsion = 30912.307287 eV Total energy + Delta-G solvation = -4981.568062 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.81938 -42.57923 -40.94850 -40.54117 -39.70656 -39.07848 -37.70103 -37.01432 -36.33748 -34.25080 -33.70591 -31.92462 -31.04323 -29.44080 -28.54572 -27.24258 -26.95951 -26.26262 -25.04137 -24.01853 -22.79611 -22.15689 -21.82422 -20.64946 -19.98225 -19.38380 -19.05009 -18.63876 -18.41999 -18.00123 -17.80762 -17.68307 -17.49750 -16.99870 -16.95171 -16.58233 -16.24462 -16.07263 -15.82510 -15.76032 -15.39451 -15.06802 -14.74011 -14.56510 -14.52855 -14.47563 -14.19176 -13.96720 -13.63171 -13.54883 -13.41744 -13.38783 -13.27768 -13.21642 -12.53672 -12.40492 -12.29084 -12.24667 -12.09395 -11.98856 -11.91958 -11.87947 -11.49789 -11.17707 -11.04533 -10.48192 -10.45434 -9.87079 -9.02215 -5.00787 -0.74018 0.08806 0.53117 0.77318 1.09643 1.29224 1.47036 1.66287 1.68194 1.81097 1.99942 2.13257 2.38521 2.86956 3.02602 3.07880 3.26198 3.38375 3.46736 3.61382 3.64955 3.66829 3.78670 3.85144 3.94962 4.11608 4.14296 4.15830 4.19379 4.33863 4.39177 4.43977 4.45515 4.47744 4.53657 4.58672 4.62766 4.70019 4.75219 4.77804 4.79355 4.84941 5.02750 5.05600 5.14045 5.19933 5.31708 5.53697 6.02861 6.26505 6.43536 6.63817 6.78052 6.87508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.523 6.523 5 C 0.147 3.853 6 N -0.664 5.664 7 C 0.608 3.392 8 O -0.542 6.542 9 C -0.029 4.029 10 C -0.114 4.114 11 C -0.099 4.099 12 C -0.108 4.108 13 C -0.083 4.083 14 O -0.556 6.556 15 Si 0.799 3.201 16 C -0.078 4.078 17 C -0.163 4.163 18 C 0.138 3.862 19 O -0.333 6.333 20 C 0.013 3.987 21 C 0.022 3.978 22 O -0.177 6.177 23 C -0.139 4.139 24 C 0.099 3.901 25 H 0.114 0.886 26 O -0.562 6.562 27 C -0.128 4.128 28 H 0.129 0.871 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.426 0.574 32 H 0.166 0.834 33 H 0.095 0.905 34 H 0.396 0.604 35 H -0.278 1.278 36 H -0.301 1.301 37 H 0.177 0.823 38 H 0.186 0.814 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.404 0.596 45 H 0.067 0.933 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.915 -7.643 3.533 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.411 6.411 5 C 0.058 3.942 6 N -0.317 5.317 7 C 0.394 3.606 8 O -0.421 6.421 9 C -0.079 4.079 10 C -0.135 4.135 11 C -0.100 4.100 12 C -0.109 4.109 13 C -0.191 4.191 14 O -0.364 6.364 15 Si 0.703 3.297 16 C -0.095 4.095 17 C -0.182 4.182 18 C 0.092 3.908 19 O -0.247 6.247 20 C -0.080 4.080 21 C -0.026 4.026 22 O -0.079 6.079 23 C -0.176 4.176 24 C 0.040 3.960 25 H 0.131 0.869 26 O -0.371 6.371 27 C -0.166 4.166 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.265 0.735 32 H 0.184 0.816 33 H 0.113 0.887 34 H 0.246 0.754 35 H -0.205 1.205 36 H -0.230 1.230 37 H 0.194 0.806 38 H 0.203 0.797 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.255 0.745 45 H 0.086 0.914 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.923 -7.035 2.617 10.211 hybrid contribution -0.742 0.236 0.813 1.125 sum 6.181 -6.799 3.430 9.808 Atomic orbital electron populations 1.23549 0.74907 1.05654 1.02505 1.86519 1.24933 1.32942 1.83256 1.24203 0.92190 0.81504 0.71211 1.90652 1.66979 1.37189 1.46293 1.21511 0.83502 0.90959 0.98204 1.45155 1.52332 1.29140 1.05066 1.16724 0.79939 0.81700 0.82203 1.90916 1.38397 1.40654 1.72120 1.21636 0.98379 0.94432 0.93438 1.22820 0.99610 0.97478 0.93585 1.19568 0.99636 0.97335 0.93508 1.19681 1.00307 0.97480 0.93445 1.25407 0.98650 0.96038 0.99024 1.86508 1.27454 1.31889 1.90533 0.93828 0.89364 0.73357 0.73135 1.20797 0.94804 0.94564 0.99323 1.21450 1.04341 1.03182 0.89208 1.17978 0.93525 0.91594 0.87703 1.86148 1.60143 1.50224 1.28158 1.23507 0.92106 0.86362 1.06072 1.19247 1.01051 0.95968 0.86302 1.84012 1.51220 1.37725 1.34896 1.24073 0.99005 1.03493 0.91075 1.22544 0.84481 0.95365 0.93614 0.86883 1.86504 1.27821 1.82148 1.40662 1.23509 0.97770 0.93920 1.01403 0.85282 0.90904 0.92974 0.73486 0.81610 0.88749 0.75417 1.20480 1.22957 0.80628 0.79722 0.90680 0.90365 0.86647 0.85453 0.86245 0.74456 0.91417 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.31 16 2 O -0.36 -3.32 10.41 -51.43 -0.54 -3.86 16 3 C 0.47 5.00 6.42 71.23 0.46 5.46 16 4 O -0.52 -8.13 15.66 21.97 0.34 -7.79 16 5 C 0.15 0.74 1.00 3.39 0.00 0.75 16 6 N -0.66 -3.91 4.52 -427.53 -1.93 -5.85 16 7 C 0.61 7.46 7.27 86.54 0.63 8.09 16 8 O -0.54 -10.20 15.55 -4.21 -0.07 -10.27 16 9 C -0.03 -0.32 7.07 24.00 0.17 -0.15 16 10 C -0.11 -1.26 10.68 23.79 0.25 -1.00 16 11 C -0.10 -0.78 6.16 -20.24 -0.12 -0.91 16 12 C -0.11 -0.22 5.26 -19.87 -0.10 -0.32 16 13 C -0.08 -0.11 2.70 71.24 0.19 0.08 16 14 O -0.56 -1.41 12.88 -148.98 -1.92 -3.33 16 15 Si 0.80 -2.72 29.93 68.60 2.05 -0.67 16 16 C -0.08 0.33 8.62 22.02 0.19 0.52 16 17 C -0.16 0.66 9.03 22.40 0.20 0.87 16 18 C 0.14 0.39 6.70 22.57 0.15 0.55 16 19 O -0.33 -0.65 10.50 -93.13 -0.98 -1.63 16 20 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 21 C 0.02 0.18 7.35 23.14 0.17 0.35 16 22 O -0.18 -1.75 10.29 -13.39 -0.14 -1.89 16 23 C -0.14 0.60 7.20 31.13 0.22 0.82 16 24 C 0.10 -0.31 5.28 31.12 0.16 -0.15 16 25 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 26 O -0.56 1.18 13.09 -148.98 -1.95 -0.77 16 27 C -0.13 -0.67 6.67 31.12 0.21 -0.46 16 28 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.07 0.18 8.13 -2.39 -0.02 0.16 16 30 H 0.05 0.35 8.13 -2.38 -0.02 0.33 16 31 H 0.43 0.66 8.39 -92.71 -0.78 -0.12 16 32 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.09 0.42 7.96 -2.39 -0.02 0.40 16 34 H 0.40 -2.62 8.70 -74.06 -0.64 -3.26 16 35 H -0.28 -0.17 7.11 99.48 0.71 0.53 16 36 H -0.30 -1.45 7.11 99.48 0.71 -0.75 16 37 H 0.18 -2.09 5.07 -2.91 -0.01 -2.11 16 38 H 0.19 -2.18 6.26 -2.91 -0.02 -2.20 16 39 H 0.07 -0.81 7.66 -2.38 -0.02 -0.83 16 40 H 0.08 -0.88 7.66 -2.39 -0.02 -0.90 16 41 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.13 -0.82 8.10 -2.39 -0.02 -0.84 16 43 H 0.12 -1.02 8.09 -2.39 -0.02 -1.04 16 44 H 0.40 -4.63 9.12 -74.06 -0.68 -5.30 16 45 H 0.07 0.74 7.41 -2.39 -0.02 0.72 16 46 H 0.12 0.64 7.35 -2.39 -0.02 0.62 16 Total: 0.00 -33.37 395.34 -0.99 -34.36 By element: Atomic # 1 Polarization: -14.15 SS G_CDS: -0.97 Total: -15.12 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 5.10 Total: 16.81 kcal Atomic # 7 Polarization: -3.91 SS G_CDS: -1.93 Total: -5.85 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -5.24 Total: -29.53 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.05 Total: -0.67 kcal Total: -33.37 -0.99 -34.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.007 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds