Wall clock time and date at job start Tue Mar 9 2021 13:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99655 * 2 1 4 4 O 1.20828 * 120.00232 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00029 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.85133 * 324.06290 * 5 3 2 7 7 C 1.34783 * 119.99579 * 293.64376 * 6 5 3 8 8 O 1.21695 * 120.00082 * 354.98097 * 7 6 5 9 9 C 1.46576 * 119.99864 * 174.98417 * 7 6 5 10 10 C 1.36652 * 125.46009 * 180.02562 * 9 7 6 11 11 C 1.37470 * 113.29859 * 179.97438 * 10 9 7 12 12 C 1.50700 * 122.44572 * 180.02562 * 11 10 9 13 13 C 1.33811 * 115.10114 * 359.97438 * 11 10 9 14 14 C 1.50706 * 124.52397 * 179.97438 * 13 11 10 15 15 O 1.42906 * 109.46799 * 330.00558 * 14 13 11 16 16 Si 1.86297 * 109.47535 * 210.00341 * 14 13 11 17 17 S 1.70612 * 110.95936 * 0.02562 * 13 11 10 18 18 C 1.53785 * 113.61686 * 192.86267 * 5 3 2 19 19 C 1.53783 * 87.08160 * 270.80049 * 18 5 3 20 20 H 1.09002 * 113.61784 * 89.11073 * 19 18 5 21 21 O 1.42898 * 113.61597 * 220.01841 * 19 18 5 22 22 C 1.53784 * 113.69135 * 95.32467 * 5 3 2 23 23 H 1.08999 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47260 * 299.99829 * 1 2 3 25 25 H 1.09002 * 109.47120 * 60.00711 * 1 2 3 26 26 H 0.96996 * 120.00328 * 113.64368 * 6 5 3 27 27 H 1.07998 * 123.34636 * 359.97438 * 10 9 7 28 28 H 1.09000 * 109.47415 * 269.97093 * 12 11 10 29 29 H 1.08998 * 109.47066 * 29.98127 * 12 11 10 30 30 H 1.09002 * 109.46915 * 149.97574 * 12 11 10 31 31 H 1.08997 * 109.46872 * 90.00159 * 14 13 11 32 32 H 0.96700 * 113.99721 * 299.99323 * 15 14 13 33 33 H 1.48507 * 109.99912 * 58.67976 * 16 14 13 34 34 H 1.48494 * 110.00308 * 179.97438 * 16 14 13 35 35 H 1.09003 * 113.60997 * 25.34986 * 18 5 3 36 36 H 1.08994 * 113.61355 * 156.25014 * 18 5 3 37 37 H 0.96698 * 114.00242 * 180.02562 * 21 19 18 38 38 H 1.08996 * 113.61404 * 203.67295 * 22 5 3 39 39 H 1.08993 * 113.61719 * 334.58797 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 4.1913 0.2134 0.7934 7 6 4.0225 0.1825 2.1302 8 8 3.4283 1.0853 2.6896 9 6 4.5546 -0.9385 2.9103 10 6 4.4477 -1.0832 4.2650 11 6 5.0378 -2.2314 4.7375 12 6 5.0409 -2.5961 6.1997 13 6 5.6082 -3.0020 3.8040 14 6 6.3134 -4.3038 4.0853 15 8 6.8886 -4.2611 5.3927 16 14 7.6584 -4.5669 2.8233 17 16 5.4319 -2.3134 2.2530 18 6 4.1094 2.6792 0.3142 19 6 4.0443 2.9561 -1.1971 20 1 3.0865 3.3589 -1.5264 21 8 5.1600 3.6998 -1.6913 22 6 4.1770 1.4376 -1.4014 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 4.7267 -0.4671 0.3562 27 1 3.9492 -0.3667 4.9010 28 1 5.9275 -2.1781 6.6765 29 1 4.1476 -2.1929 6.6766 30 1 5.0500 -3.6811 6.3035 31 1 5.5977 -5.1240 4.0298 32 1 7.5365 -3.5536 5.5144 33 1 8.6235 -3.4390 2.8670 34 1 8.3618 -5.8472 3.0901 35 1 3.4240 3.2915 0.9002 36 1 5.1232 2.6758 0.7142 37 1 5.1245 3.8775 -2.6412 38 1 5.2094 1.0950 -1.4703 39 1 3.5463 1.0479 -2.2003 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12808048_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:48 Heat of formation + Delta-G solvation = -126.751595 kcal Electronic energy + Delta-G solvation = -26335.990258 eV Core-core repulsion = 22338.718615 eV Total energy + Delta-G solvation = -3997.271643 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.51102 -40.71206 -40.08123 -39.45833 -37.50163 -37.44215 -36.47426 -34.20550 -32.09496 -30.30324 -29.25681 -27.26672 -27.16470 -25.71971 -24.46548 -23.08693 -21.79731 -20.73212 -20.27436 -19.50063 -19.31586 -18.24868 -17.93759 -17.62317 -17.58362 -17.16921 -16.81521 -16.57082 -16.07891 -15.91734 -15.58179 -15.37819 -14.67772 -14.56065 -14.49054 -14.31397 -14.02052 -13.92736 -13.72188 -13.51231 -13.36784 -13.16055 -13.13811 -13.00870 -12.56025 -12.43510 -12.28524 -11.92604 -11.87127 -11.81067 -11.73194 -11.17572 -11.07558 -10.94898 -10.42706 -9.72777 -9.45623 -5.24942 -0.66961 0.25244 0.66349 0.94882 1.01082 1.27291 1.44268 1.51469 1.76707 1.78699 2.12156 2.93057 3.06357 3.08246 3.30756 3.45878 3.47229 3.54266 3.75592 4.03505 4.07179 4.14081 4.22997 4.23789 4.33010 4.39836 4.46469 4.54083 4.57329 4.61992 4.74399 4.79337 4.81989 4.94866 4.99342 5.10953 5.31346 5.34529 5.40698 6.15368 6.16999 6.55796 6.63124 6.96234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.479 3.521 4 O -0.488 6.488 5 C 0.157 3.843 6 N -0.707 5.707 7 C 0.597 3.403 8 O -0.513 6.513 9 C -0.262 4.262 10 C -0.044 4.044 11 C -0.096 4.096 12 C -0.096 4.096 13 C -0.234 4.234 14 C -0.033 4.033 15 O -0.517 6.517 16 Si 0.663 3.337 17 S 0.206 5.794 18 C -0.104 4.104 19 C 0.081 3.919 20 H 0.097 0.903 21 O -0.551 6.551 22 C -0.156 4.156 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.407 0.593 27 H 0.155 0.845 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.379 0.621 33 H -0.246 1.246 34 H -0.237 1.237 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.383 0.617 38 H 0.118 0.882 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -4.387 -4.793 6.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.319 3.681 4 O -0.373 6.373 5 C 0.069 3.931 6 N -0.361 5.361 7 C 0.384 3.616 8 O -0.389 6.389 9 C -0.382 4.382 10 C -0.077 4.077 11 C -0.108 4.108 12 C -0.154 4.154 13 C -0.353 4.353 14 C -0.144 4.144 15 O -0.324 6.324 16 Si 0.560 3.440 17 S 0.474 5.526 18 C -0.142 4.142 19 C 0.021 3.979 20 H 0.115 0.885 21 O -0.356 6.356 22 C -0.194 4.194 23 H 0.123 0.877 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.243 0.757 27 H 0.173 0.827 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.147 0.853 32 H 0.227 0.773 33 H -0.170 1.170 34 H -0.161 1.161 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.231 0.769 38 H 0.136 0.864 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.874 -4.523 -5.302 7.216 hybrid contribution -0.366 0.557 1.689 1.816 sum 1.508 -3.966 -3.612 5.572 Atomic orbital electron populations 1.23368 0.75560 1.04164 1.02876 1.86497 1.23913 1.32619 1.83546 1.23078 0.90516 0.81952 0.72566 1.90703 1.65998 1.36318 1.44258 1.21033 0.85984 0.90722 0.95383 1.45594 1.53698 1.30468 1.06387 1.17000 0.78842 0.84533 0.81253 1.90895 1.41184 1.36671 1.70190 1.24453 1.13837 1.01652 0.98269 1.20721 0.97129 0.96936 0.92958 1.18700 0.99592 0.94471 0.98086 1.20640 1.02133 1.03408 0.89267 1.24447 1.08691 1.03736 0.98474 1.24442 1.03154 0.94753 0.92078 1.86643 1.59910 1.57246 1.28601 0.95512 0.81180 0.82590 0.84691 1.82663 1.50616 1.12760 1.06521 1.23330 1.03423 0.91577 0.95911 1.23223 0.90613 0.88822 0.95197 0.88508 1.86540 1.44357 1.75734 1.28991 1.24083 1.03217 0.99166 0.92913 0.87671 0.91582 0.91572 0.75681 0.82746 0.91201 0.91776 0.89672 0.85316 0.77290 1.17007 1.16062 0.88347 0.87212 0.76879 0.86387 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 101.05 1.07 1.07 16 2 O -0.35 -0.81 10.42 -39.27 -0.41 -1.22 16 3 C 0.48 1.56 6.44 36.00 0.23 1.80 16 4 O -0.49 -2.71 15.11 -18.75 -0.28 -3.00 16 5 C 0.16 0.15 1.11 -132.16 -0.15 0.00 16 6 N -0.71 -0.13 5.12 -49.24 -0.25 -0.38 16 7 C 0.60 1.69 7.43 -12.90 -0.10 1.59 16 8 O -0.51 -3.32 15.88 5.19 0.08 -3.24 16 9 C -0.26 -0.33 6.45 -36.79 -0.24 -0.56 16 10 C -0.04 -0.06 9.80 -40.43 -0.40 -0.46 16 11 C -0.10 -0.03 5.75 -106.46 -0.61 -0.64 16 12 C -0.10 0.06 8.67 36.01 0.31 0.37 16 13 C -0.23 0.18 5.53 -35.86 -0.20 -0.02 16 14 C -0.03 0.06 2.76 36.01 0.10 0.16 16 15 O -0.52 0.44 9.86 -35.23 -0.35 0.09 16 16 Si 0.66 -1.43 31.31 -169.99 -5.32 -6.75 16 17 S 0.21 -0.36 19.80 -107.50 -2.13 -2.48 16 18 C -0.10 -0.20 6.15 -25.92 -0.16 -0.36 16 19 C 0.08 -0.01 4.82 -25.91 -0.13 -0.14 16 20 H 0.10 0.00 7.63 -51.93 -0.40 -0.40 16 21 O -0.55 0.07 13.67 -35.23 -0.48 -0.42 16 22 C -0.16 0.31 7.21 -25.91 -0.19 0.13 16 23 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 24 H 0.07 0.06 8.13 -51.93 -0.42 -0.36 16 25 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 26 H 0.41 -1.09 7.83 -40.82 -0.32 -1.41 16 27 H 0.15 0.24 8.06 -52.49 -0.42 -0.19 16 28 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 30 H 0.08 -0.01 6.42 -51.93 -0.33 -0.34 16 31 H 0.13 -0.33 7.96 -51.93 -0.41 -0.74 16 32 H 0.38 -1.20 8.66 45.56 0.39 -0.80 16 33 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 34 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 35 H 0.10 0.39 7.64 -51.93 -0.40 -0.01 16 36 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.38 -1.70 9.12 45.56 0.42 -1.28 16 38 H 0.12 -0.41 8.14 -51.93 -0.42 -0.84 16 39 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 LS Contribution 346.46 15.07 5.22 5.22 Total: 0.00 -9.61 346.46 -8.42 -18.02 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -4.05 Total: -8.79 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.45 Total: 2.94 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.25 Total: -0.38 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -1.44 Total: -7.78 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: -5.32 Total: -6.75 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.13 Total: -2.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -9.61 -8.42 -18.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.729 kcal (2) G-P(sol) polarization free energy of solvation -9.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds