Wall clock time and date at job start Tue Mar 9 2021 13:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99655 * 2 1 4 4 O 1.20828 * 120.00232 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00029 * 179.97438 * 3 2 1 6 6 N 1.46499 * 112.85133 * 324.06290 * 5 3 2 7 7 C 1.34783 * 119.99579 * 293.64376 * 6 5 3 8 8 O 1.21695 * 120.00082 * 354.98097 * 7 6 5 9 9 C 1.46576 * 119.99864 * 174.98417 * 7 6 5 10 10 C 1.36652 * 125.46009 * 180.02562 * 9 7 6 11 11 C 1.37470 * 113.29859 * 179.97438 * 10 9 7 12 12 C 1.50700 * 122.44572 * 180.02562 * 11 10 9 13 13 C 1.33811 * 115.10114 * 359.97438 * 11 10 9 14 14 C 1.50706 * 124.52397 * 179.97438 * 13 11 10 15 15 O 1.42906 * 109.46799 * 330.00558 * 14 13 11 16 16 Si 1.86297 * 109.47535 * 210.00341 * 14 13 11 17 17 S 1.70612 * 110.95936 * 0.02562 * 13 11 10 18 18 C 1.53785 * 113.61686 * 192.86267 * 5 3 2 19 19 C 1.53783 * 87.08160 * 270.80049 * 18 5 3 20 20 H 1.09002 * 113.61784 * 89.11073 * 19 18 5 21 21 O 1.42898 * 113.61597 * 220.01841 * 19 18 5 22 22 C 1.53784 * 113.69135 * 95.32467 * 5 3 2 23 23 H 1.08999 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47260 * 299.99829 * 1 2 3 25 25 H 1.09002 * 109.47120 * 60.00711 * 1 2 3 26 26 H 0.96996 * 120.00328 * 113.64368 * 6 5 3 27 27 H 1.07998 * 123.34636 * 359.97438 * 10 9 7 28 28 H 1.09000 * 109.47415 * 269.97093 * 12 11 10 29 29 H 1.08998 * 109.47066 * 29.98127 * 12 11 10 30 30 H 1.09002 * 109.46915 * 149.97574 * 12 11 10 31 31 H 1.08997 * 109.46872 * 90.00159 * 14 13 11 32 32 H 0.96700 * 113.99721 * 299.99323 * 15 14 13 33 33 H 1.48507 * 109.99912 * 58.67976 * 16 14 13 34 34 H 1.48494 * 110.00308 * 179.97438 * 16 14 13 35 35 H 1.09003 * 113.60997 * 25.34986 * 18 5 3 36 36 H 1.08994 * 113.61355 * 156.25014 * 18 5 3 37 37 H 0.96698 * 114.00242 * 180.02562 * 21 19 18 38 38 H 1.08996 * 113.61404 * 203.67295 * 22 5 3 39 39 H 1.08993 * 113.61719 * 334.58797 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 4.1913 0.2134 0.7934 7 6 4.0225 0.1825 2.1302 8 8 3.4283 1.0853 2.6896 9 6 4.5546 -0.9385 2.9103 10 6 4.4477 -1.0832 4.2650 11 6 5.0378 -2.2314 4.7375 12 6 5.0409 -2.5961 6.1997 13 6 5.6082 -3.0020 3.8040 14 6 6.3134 -4.3038 4.0853 15 8 6.8886 -4.2611 5.3927 16 14 7.6584 -4.5669 2.8233 17 16 5.4319 -2.3134 2.2530 18 6 4.1094 2.6792 0.3142 19 6 4.0443 2.9561 -1.1971 20 1 3.0865 3.3589 -1.5264 21 8 5.1600 3.6998 -1.6913 22 6 4.1770 1.4376 -1.4014 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 4.7267 -0.4671 0.3562 27 1 3.9492 -0.3667 4.9010 28 1 5.9275 -2.1781 6.6765 29 1 4.1476 -2.1929 6.6766 30 1 5.0500 -3.6811 6.3035 31 1 5.5977 -5.1240 4.0298 32 1 7.5365 -3.5536 5.5144 33 1 8.6235 -3.4390 2.8670 34 1 8.3618 -5.8472 3.0901 35 1 3.4240 3.2915 0.9002 36 1 5.1232 2.6758 0.7142 37 1 5.1245 3.8775 -2.6412 38 1 5.2094 1.0950 -1.4703 39 1 3.5463 1.0479 -2.2003 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:48 Heat of formation + Delta-G solvation = -130.395973 kcal Electronic energy + Delta-G solvation = -26336.148290 eV Core-core repulsion = 22338.718615 eV Total energy + Delta-G solvation = -3997.429676 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.64366 -40.86891 -40.09929 -39.52360 -37.65138 -37.44354 -36.53828 -34.31567 -32.09205 -30.24543 -29.33132 -27.31695 -27.14775 -25.73877 -24.48346 -23.15724 -21.87531 -20.83952 -20.27987 -19.51977 -19.38854 -18.34043 -18.01070 -17.67501 -17.60746 -17.25954 -16.87358 -16.50723 -16.10882 -16.04967 -15.59596 -15.43878 -14.71846 -14.57663 -14.48735 -14.43483 -13.97289 -13.88101 -13.68911 -13.51235 -13.45994 -13.20826 -13.13808 -13.00027 -12.65918 -12.42233 -12.25483 -11.99359 -11.96728 -11.85463 -11.83346 -11.32107 -11.06833 -10.88419 -10.57016 -9.70351 -9.38029 -5.10628 -0.70598 0.28826 0.68269 0.77007 1.04633 1.27802 1.42846 1.56377 1.69347 1.89875 1.99835 2.93797 3.09162 3.24089 3.31737 3.41561 3.48569 3.58448 3.74967 4.04602 4.07734 4.17078 4.20924 4.26995 4.47564 4.50426 4.54845 4.56217 4.59929 4.66191 4.73703 4.77017 4.80958 4.84967 4.98039 5.04772 5.18201 5.36669 5.42630 6.14355 6.37184 6.43700 6.82746 6.85311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.520 6.520 5 C 0.152 3.848 6 N -0.691 5.691 7 C 0.594 3.406 8 O -0.561 6.561 9 C -0.289 4.289 10 C -0.056 4.056 11 C -0.110 4.110 12 C -0.092 4.092 13 C -0.235 4.235 14 C -0.039 4.039 15 O -0.530 6.530 16 Si 0.740 3.260 17 S 0.278 5.722 18 C -0.115 4.115 19 C 0.086 3.914 20 H 0.092 0.908 21 O -0.565 6.565 22 C -0.132 4.132 23 H 0.134 0.866 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.422 0.578 27 H 0.141 0.859 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.388 0.612 33 H -0.273 1.273 34 H -0.276 1.276 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.402 0.598 38 H 0.141 0.859 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -6.145 -6.485 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.317 3.683 4 O -0.407 6.407 5 C 0.063 3.937 6 N -0.346 5.346 7 C 0.382 3.618 8 O -0.441 6.441 9 C -0.409 4.409 10 C -0.091 4.091 11 C -0.122 4.122 12 C -0.151 4.151 13 C -0.355 4.355 14 C -0.150 4.150 15 O -0.338 6.338 16 Si 0.641 3.359 17 S 0.547 5.453 18 C -0.153 4.153 19 C 0.026 3.974 20 H 0.109 0.891 21 O -0.374 6.374 22 C -0.170 4.170 23 H 0.152 0.848 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.262 0.738 27 H 0.159 0.841 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.238 0.762 33 H -0.199 1.199 34 H -0.202 1.202 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.253 0.747 38 H 0.159 0.841 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.823 -6.306 -7.040 9.864 hybrid contribution -0.619 1.058 2.238 2.552 sum 2.204 -5.248 -4.802 7.447 Atomic orbital electron populations 1.23597 0.74531 1.05972 1.02497 1.86491 1.25040 1.32099 1.83166 1.23552 0.91432 0.81750 0.71588 1.90682 1.66891 1.37311 1.45856 1.21091 0.84926 0.90279 0.97415 1.45455 1.53091 1.30512 1.05581 1.17293 0.78182 0.84352 0.81944 1.90870 1.43440 1.38539 1.71215 1.24460 1.15190 1.02785 0.98431 1.20737 0.97701 0.97369 0.93252 1.18709 1.00348 0.94436 0.98710 1.20604 1.02299 1.03141 0.89026 1.24721 1.07777 1.03842 0.99153 1.24694 1.03677 0.94558 0.92040 1.86624 1.60322 1.57803 1.29074 0.94705 0.79178 0.78869 0.83147 1.82312 1.48311 1.09942 1.04714 1.23332 1.02480 0.92194 0.97310 1.23073 0.90460 0.90367 0.93504 0.89074 1.86493 1.44140 1.75878 1.30871 1.24066 1.04575 0.97204 0.91142 0.84767 0.93025 0.90957 0.73813 0.84110 0.90636 0.92108 0.89894 0.84021 0.76236 1.19883 1.20170 0.91524 0.87412 0.74690 0.84055 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.21 16 2 O -0.35 -1.75 10.42 -51.44 -0.54 -2.28 16 3 C 0.48 3.64 6.44 71.24 0.46 4.10 16 4 O -0.52 -6.91 15.11 21.96 0.33 -6.58 16 5 C 0.15 0.35 1.11 3.39 0.00 0.36 16 6 N -0.69 -0.24 5.12 -427.93 -2.19 -2.43 16 7 C 0.59 4.09 7.43 86.42 0.64 4.74 16 8 O -0.56 -8.85 15.88 -4.33 -0.07 -8.92 16 9 C -0.29 -0.87 6.45 24.08 0.16 -0.72 16 10 C -0.06 -0.24 9.80 21.72 0.21 -0.03 16 11 C -0.11 -0.10 5.75 -21.05 -0.12 -0.22 16 12 C -0.09 0.06 8.67 71.24 0.62 0.68 16 13 C -0.23 0.57 5.53 24.68 0.14 0.71 16 14 C -0.04 0.18 2.76 71.24 0.20 0.38 16 15 O -0.53 1.28 9.86 -148.98 -1.47 -0.19 16 16 Si 0.74 -4.13 31.31 68.60 2.15 -1.98 16 17 S 0.28 -1.35 19.80 -56.49 -1.12 -2.47 16 18 C -0.11 -0.63 6.15 31.12 0.19 -0.43 16 19 C 0.09 -0.01 4.82 31.12 0.15 0.14 16 20 H 0.09 0.08 7.63 -2.39 -0.02 0.06 16 21 O -0.57 0.40 13.67 -148.98 -2.04 -1.64 16 22 C -0.13 0.72 7.21 31.12 0.22 0.95 16 23 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 24 H 0.05 0.19 8.13 -2.39 -0.02 0.17 16 25 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 26 H 0.42 -2.88 7.83 -92.71 -0.73 -3.60 16 27 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 28 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 30 H 0.08 -0.01 6.42 -2.39 -0.02 -0.03 16 31 H 0.14 -0.99 7.96 -2.39 -0.02 -1.01 16 32 H 0.39 -2.68 8.66 -74.06 -0.64 -3.32 16 33 H -0.27 0.26 7.11 99.48 0.71 0.96 16 34 H -0.28 -0.30 7.11 99.48 0.71 0.41 16 35 H 0.07 0.77 7.64 -2.39 -0.02 0.76 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.40 -3.97 9.12 -74.06 -0.68 -4.65 16 38 H 0.14 -1.40 8.14 -2.39 -0.02 -1.42 16 39 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16 Total: 0.00 -25.22 346.46 -1.75 -26.98 By element: Atomic # 1 Polarization: -11.47 SS G_CDS: -0.88 Total: -12.35 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 4.07 Total: 11.86 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -2.19 Total: -2.43 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -3.78 Total: -19.61 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.15 Total: -1.98 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -1.12 Total: -2.47 kcal Total: -25.22 -1.75 -26.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.419 kcal (2) G-P(sol) polarization free energy of solvation -25.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds