Wall clock time and date at job start Tue Mar 9 2021 13:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00090 * 2 1 4 4 O 1.20832 * 119.99401 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00582 * 179.97438 * 3 2 1 6 6 N 1.46500 * 112.84575 * 25.33478 * 5 3 2 7 7 C 1.34785 * 120.00002 * 309.66357 * 6 5 3 8 8 O 1.21275 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99912 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.47036 * 180.02562 * 9 7 6 11 11 C 1.36831 * 125.06490 * 265.08328 * 10 9 7 12 12 C 1.34231 * 109.93657 * 180.34279 * 11 10 9 13 13 C 1.50706 * 126.49949 * 179.71710 * 12 11 10 14 14 O 1.42898 * 109.47176 * 255.04162 * 13 12 11 15 15 Si 1.86306 * 109.47055 * 15.04177 * 13 12 11 16 16 C 1.46484 * 107.00213 * 359.75218 * 12 11 10 17 17 C 1.39592 * 134.04094 * 179.97438 * 16 12 11 18 18 C 1.36663 * 119.76983 * 180.02562 * 17 16 12 19 19 C 1.38791 * 120.52190 * 359.97438 * 18 17 16 20 20 C 1.37780 * 120.67101 * 0.02562 * 19 18 17 21 21 C 1.37692 * 125.05907 * 84.99675 * 10 9 7 22 22 C 1.53774 * 113.61737 * 254.13964 * 5 3 2 23 23 C 1.54048 * 86.98552 * 219.97649 * 22 5 3 24 24 H 1.09010 * 113.69399 * 139.98536 * 23 22 5 25 25 O 1.42896 * 113.61457 * 270.88117 * 23 22 5 26 26 C 1.53778 * 113.61583 * 156.52600 * 5 3 2 27 27 H 1.09003 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47328 * 299.99392 * 1 2 3 29 29 H 1.08994 * 109.47448 * 60.00385 * 1 2 3 30 30 H 0.96999 * 120.00512 * 129.66775 * 6 5 3 31 31 H 1.08996 * 109.46974 * 60.00310 * 9 7 6 32 32 H 1.08997 * 109.47252 * 300.00364 * 9 7 6 33 33 H 1.08002 * 125.03246 * 0.09206 * 11 10 9 34 34 H 1.09005 * 109.46903 * 135.03862 * 13 12 11 35 35 H 0.96696 * 114.00040 * 59.99621 * 14 13 12 36 36 H 1.48497 * 110.00044 * 58.67611 * 15 13 12 37 37 H 1.48496 * 110.00069 * 180.02562 * 15 13 12 38 38 H 1.08002 * 120.11376 * 0.03135 * 17 16 12 39 39 H 1.07998 * 119.73772 * 180.02562 * 18 17 16 40 40 H 1.07999 * 119.66055 * 180.02562 * 19 18 17 41 41 H 1.07998 * 120.11554 * 179.97438 * 20 19 18 42 42 H 1.09002 * 113.61381 * 334.48186 * 22 5 3 43 43 H 1.09003 * 113.61577 * 105.38186 * 22 5 3 44 44 H 0.96703 * 114.00010 * 277.48974 * 25 23 22 45 45 H 1.08999 * 113.61686 * 254.61451 * 26 5 3 46 46 H 1.08995 * 113.61381 * 25.52148 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1985 0.0861 -0.5766 7 6 3.8373 -1.1417 -0.1539 8 8 2.9886 -1.2623 0.7039 9 6 4.4880 -2.3646 -0.7473 10 7 3.9267 -3.5666 -0.1258 11 6 4.4722 -4.2282 0.9405 12 6 3.7148 -5.2905 1.2563 13 6 3.9739 -6.2786 2.3643 14 8 4.4600 -7.5017 1.8078 15 14 5.2446 -5.5805 3.5343 16 6 2.5892 -5.3077 0.3191 17 6 1.4874 -6.1462 0.1410 18 6 0.5895 -5.8844 -0.8554 19 6 0.7637 -4.7908 -1.6919 20 6 1.8440 -3.9502 -1.5339 21 6 2.7706 -4.1980 -0.5267 22 6 4.1608 1.6921 1.3560 23 6 5.1653 2.5471 0.5605 24 1 5.3687 3.5180 1.0125 25 8 6.3551 1.8435 0.1982 26 6 4.1140 2.5978 -0.5607 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 4.8771 0.1825 -1.2630 31 1 5.5621 -2.3290 -0.5654 32 1 4.3020 -2.3904 -1.8210 33 1 5.3801 -3.9407 1.4500 34 1 3.0471 -6.4686 2.9057 35 1 5.2841 -7.4076 1.3108 36 1 4.7648 -4.2921 4.0955 37 1 5.5095 -6.5457 4.6313 38 1 1.3451 -6.9988 0.7885 39 1 -0.2630 -6.5333 -0.9924 40 1 0.0453 -4.5967 -2.4746 41 1 1.9710 -3.1020 -2.1902 42 1 3.4779 2.2791 1.9702 43 1 4.6220 0.8693 1.9023 44 1 7.0202 1.8083 0.8993 45 1 4.5375 2.5057 -1.5608 46 1 3.4184 3.4320 -0.4697 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:59 Heat of formation + Delta-G solvation = -81.211598 kcal Electronic energy + Delta-G solvation = -34069.612316 eV Core-core repulsion = 29507.747377 eV Total energy + Delta-G solvation = -4561.864938 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63531 -42.27430 -40.51325 -39.64931 -38.07456 -37.62115 -37.47487 -36.07907 -34.25711 -33.68201 -31.40636 -30.20815 -29.50362 -28.73435 -27.14797 -26.66497 -25.58306 -23.76657 -22.98654 -22.52040 -21.72962 -20.63513 -20.45647 -19.22833 -18.87827 -18.42608 -18.10789 -17.81410 -17.45686 -17.44362 -17.15875 -16.65393 -16.40528 -16.04029 -15.97120 -15.47157 -15.41209 -15.30975 -15.01843 -14.77051 -14.68151 -14.48825 -14.34217 -14.04931 -13.86856 -13.71213 -13.56787 -13.34419 -13.14840 -12.99212 -12.69706 -12.54040 -12.47140 -12.24740 -12.10254 -11.99315 -11.87506 -11.79936 -11.59891 -11.00184 -10.87091 -10.50628 -10.29138 -10.21446 -9.12515 -8.59375 -5.04291 0.16967 0.65341 0.88984 1.35607 1.43877 1.55077 1.65560 1.70720 1.77545 2.01041 2.11550 2.93016 2.97061 3.08079 3.37605 3.52316 3.61803 3.65444 3.73718 3.75351 3.86032 3.91540 4.08177 4.09372 4.15004 4.21106 4.23305 4.26868 4.33158 4.50158 4.50789 4.53554 4.58371 4.65439 4.72554 4.73822 4.74441 4.81130 4.86219 4.90442 5.15461 5.28728 5.30549 5.52872 5.68116 5.75765 5.78427 6.23092 6.26182 6.48429 6.56812 6.86043 6.90651 7.20470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.322 6.322 3 C 0.457 3.543 4 O -0.538 6.538 5 C 0.155 3.845 6 N -0.684 5.684 7 C 0.485 3.515 8 O -0.522 6.522 9 C 0.094 3.906 10 N -0.463 5.463 11 C 0.083 3.917 12 C -0.226 4.226 13 C -0.041 4.041 14 O -0.561 6.561 15 Si 0.802 3.198 16 C -0.116 4.116 17 C -0.092 4.092 18 C -0.154 4.154 19 C -0.109 4.109 20 C -0.128 4.128 21 C 0.095 3.905 22 C -0.162 4.162 23 C 0.105 3.895 24 H 0.102 0.898 25 O -0.552 6.552 26 C -0.113 4.113 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.427 0.573 31 H 0.168 0.832 32 H 0.138 0.862 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.393 0.607 36 H -0.293 1.293 37 H -0.300 1.300 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.403 0.597 45 H 0.109 0.891 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 3.972 -4.057 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.301 3.699 4 O -0.428 6.428 5 C 0.065 3.935 6 N -0.341 5.341 7 C 0.270 3.730 8 O -0.397 6.397 9 C -0.031 4.031 10 N -0.145 5.145 11 C -0.043 4.043 12 C -0.234 4.234 13 C -0.151 4.151 14 O -0.369 6.369 15 Si 0.708 3.292 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.173 4.173 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.010 4.010 22 C -0.201 4.201 23 C 0.045 3.955 24 H 0.119 0.881 25 O -0.361 6.361 26 C -0.150 4.150 27 H 0.125 0.875 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.266 0.734 31 H 0.186 0.814 32 H 0.156 0.844 33 H 0.225 0.775 34 H 0.104 0.896 35 H 0.243 0.757 36 H -0.221 1.221 37 H -0.228 1.228 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.255 0.745 45 H 0.127 0.873 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.272 4.347 -3.050 9.830 hybrid contribution -1.251 -0.040 0.395 1.313 sum 7.021 4.307 -2.655 8.654 Atomic orbital electron populations 1.23339 0.77353 1.04173 1.01865 1.87040 1.22766 1.31704 1.82115 1.24495 0.92600 0.81626 0.71218 1.90658 1.67271 1.37414 1.47440 1.21254 0.83236 0.89250 0.99738 1.45365 1.43018 1.02596 1.43130 1.21505 0.82809 0.85385 0.83279 1.90852 1.31084 1.86054 1.31668 1.21906 1.01646 0.79478 1.00054 1.43424 1.20141 1.22963 1.27997 1.22043 0.99825 0.92536 0.89851 1.20752 0.98298 1.01511 1.02797 1.24573 1.05050 0.86612 0.98833 1.86451 1.46213 1.30244 1.73960 0.94139 0.82754 0.75239 0.77094 1.19338 0.97260 0.97045 0.98343 1.20418 0.93604 0.98623 0.98388 1.20873 1.00354 0.99292 0.96750 1.21072 0.97438 0.94504 0.99799 1.20190 0.94741 1.01552 0.98386 1.18328 0.89931 0.94414 0.98307 1.24143 0.99825 1.01577 0.94587 1.22475 0.84508 0.94772 0.93702 0.88065 1.86347 1.27428 1.77574 1.44721 1.23441 0.96909 0.93276 1.01413 0.87465 0.92879 0.91780 0.73359 0.81441 0.84392 0.77536 0.89618 0.75694 1.22101 1.22751 0.86813 0.84909 0.83980 0.85285 0.88806 0.89588 0.74527 0.87279 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 113.37 1.20 1.38 16 2 O -0.32 -3.11 6.31 -43.44 -0.27 -3.39 16 3 C 0.46 3.59 7.07 71.24 0.50 4.10 16 4 O -0.54 -6.66 15.79 21.94 0.35 -6.32 16 5 C 0.16 -0.11 1.11 3.38 0.00 -0.10 16 6 N -0.68 3.68 4.76 -423.93 -2.02 1.66 16 7 C 0.48 -0.66 7.25 87.66 0.64 -0.02 16 8 O -0.52 -4.65 12.95 21.11 0.27 -4.37 16 9 C 0.09 -0.74 6.48 85.63 0.56 -0.18 16 10 N -0.46 -0.16 2.27 -519.99 -1.18 -1.34 16 11 C 0.08 -0.05 9.89 83.00 0.82 0.77 16 12 C -0.23 -1.13 5.57 -18.63 -0.10 -1.23 16 13 C -0.04 -0.16 3.06 71.24 0.22 0.06 16 14 O -0.56 -2.22 12.88 -148.98 -1.92 -4.14 16 15 Si 0.80 -0.75 30.76 68.60 2.11 1.36 16 16 C -0.12 -1.11 6.35 -20.20 -0.13 -1.24 16 17 C -0.09 -0.91 10.05 22.23 0.22 -0.69 16 18 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 19 C -0.11 -0.54 10.01 22.29 0.22 -0.32 16 20 C -0.13 -0.65 10.00 22.36 0.22 -0.43 16 21 C 0.10 0.63 6.80 39.03 0.27 0.89 16 22 C -0.16 0.43 7.27 31.21 0.23 0.65 16 23 C 0.11 -0.86 5.28 31.21 0.16 -0.69 16 24 H 0.10 -1.10 8.14 -2.38 -0.02 -1.12 16 25 O -0.55 5.82 12.95 -148.98 -1.93 3.89 16 26 C -0.11 0.58 7.06 31.12 0.22 0.80 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.41 8.13 -2.39 -0.02 0.39 16 29 H 0.06 0.33 8.13 -2.39 -0.02 0.31 16 30 H 0.43 -4.87 8.47 -92.71 -0.79 -5.66 16 31 H 0.17 -2.79 8.12 -2.39 -0.02 -2.81 16 32 H 0.14 -1.64 8.14 -2.39 -0.02 -1.66 16 33 H 0.21 -1.97 6.35 -2.91 -0.02 -1.99 16 34 H 0.09 0.66 7.96 -2.38 -0.02 0.64 16 35 H 0.39 -2.07 8.70 -74.06 -0.64 -2.71 16 36 H -0.29 -1.55 7.11 99.48 0.71 -0.84 16 37 H -0.30 -1.90 7.11 99.48 0.71 -1.20 16 38 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.13 0.43 8.06 -2.91 -0.02 0.40 16 40 H 0.14 0.02 8.06 -2.91 -0.02 -0.01 16 41 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 42 H 0.09 -0.04 8.09 -2.39 -0.02 -0.06 16 43 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.40 -6.91 9.12 -74.06 -0.68 -7.58 16 45 H 0.11 -0.86 8.11 -2.39 -0.02 -0.88 16 46 H 0.12 -0.36 7.38 -2.39 -0.02 -0.38 16 Total: 0.00 -33.30 390.02 -0.14 -33.44 By element: Atomic # 1 Polarization: -22.66 SS G_CDS: -1.01 Total: -23.67 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.47 Total: 2.88 kcal Atomic # 7 Polarization: 3.52 SS G_CDS: -3.20 Total: 0.32 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -3.50 Total: -14.33 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.11 Total: 1.36 kcal Total: -33.30 -0.14 -33.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.772 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds