Wall clock time and date at job start Tue Mar 9 2021 13:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46744 * 2 1 4 4 C 1.50698 * 109.47148 * 240.00302 * 2 1 3 5 5 C 1.37815 * 119.93474 * 254.99456 * 4 2 1 6 6 C 1.39671 * 119.87688 * 179.70134 * 5 4 2 7 7 C 1.47724 * 120.11860 * 180.30566 * 6 5 4 8 8 O 1.21569 * 120.00142 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00133 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46738 * 180.02562 * 10 9 7 12 12 H 1.08993 * 112.85457 * 43.80184 * 11 10 9 13 13 C 1.53782 * 113.60872 * 175.00079 * 11 10 9 14 14 C 1.53786 * 87.08228 * 139.97705 * 13 11 10 15 15 H 1.08995 * 113.61402 * 219.93558 * 14 13 11 16 16 O 1.42895 * 113.61504 * 89.11026 * 14 13 11 17 17 C 1.53784 * 87.08028 * 334.56518 * 14 13 11 18 18 C 1.39637 * 119.76595 * 0.27549 * 6 5 4 19 19 C 1.37851 * 119.87440 * 0.02562 * 18 6 5 20 20 C 1.38638 * 120.12383 * 359.97438 * 19 18 6 21 21 F 1.35099 * 119.87894 * 180.02562 * 20 19 18 22 22 H 0.96698 * 114.00384 * 59.99926 * 1 2 3 23 23 H 1.09001 * 109.47220 * 119.99445 * 2 1 3 24 24 H 1.48500 * 109.99966 * 59.99967 * 3 2 1 25 25 H 1.48502 * 109.99832 * 181.31655 * 3 2 1 26 26 H 1.08002 * 120.06547 * 359.97438 * 5 4 2 27 27 H 0.96995 * 119.99703 * 359.97438 * 9 7 6 28 28 H 1.09002 * 109.46778 * 299.99953 * 10 9 7 29 29 H 1.08994 * 109.47434 * 59.99716 * 10 9 7 30 30 H 1.08995 * 113.61259 * 254.52040 * 13 11 10 31 31 H 1.09003 * 113.61834 * 25.43066 * 13 11 10 32 32 H 0.96698 * 114.00436 * 180.02562 * 16 14 13 33 33 H 1.09000 * 113.61230 * 270.88719 * 17 14 13 34 34 H 1.08998 * 113.61622 * 139.97955 * 17 14 13 35 35 H 1.07998 * 120.06105 * 179.97438 * 18 6 5 36 36 H 1.08003 * 119.93897 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4521 -1.9820 -1.1260 6 6 2.9116 -2.6417 -2.2682 7 6 3.4646 -4.0075 -2.1633 8 8 3.5208 -4.5592 -1.0815 9 7 3.9078 -4.6417 -3.2670 10 6 4.4567 -5.9960 -3.1629 11 6 4.8840 -6.4809 -4.5496 12 1 5.4201 -5.7206 -5.1174 13 6 5.5874 -7.8484 -4.5342 14 6 4.8027 -8.1784 -5.8150 15 1 4.4340 -9.2035 -5.8492 16 8 5.4755 -7.7903 -7.0144 17 6 3.7530 -7.1597 -5.3403 18 6 2.8458 -2.0058 -3.5096 19 6 2.3287 -0.7313 -3.6017 20 6 1.8740 -0.0810 -2.4649 21 9 1.3677 1.1678 -2.5609 22 1 -0.3934 0.4417 -0.7650 23 1 1.7923 -0.5137 0.8900 24 1 1.5613 2.4679 1.2085 25 1 3.5345 1.7704 -0.0321 26 1 2.5008 -2.4694 -0.1634 27 1 3.8633 -4.2014 -4.1301 28 1 5.3212 -5.9875 -2.4989 29 1 3.6968 -6.6662 -2.7613 30 1 6.6649 -7.7868 -4.6860 31 1 5.3138 -8.4706 -3.6820 32 1 4.9868 -7.9949 -7.8234 33 1 2.9780 -7.5936 -4.7085 34 1 3.3498 -6.5421 -6.1429 35 1 3.2001 -2.5113 -4.3958 36 1 2.2777 -0.2384 -4.5614 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_12496548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:21 Heat of formation + Delta-G solvation = -106.853322 kcal Electronic energy + Delta-G solvation = -21549.542286 eV Core-core repulsion = 17915.655418 eV Total energy + Delta-G solvation = -3633.886868 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.36867 -41.50190 -40.45472 -39.56602 -37.71416 -36.56209 -35.06552 -32.95569 -32.07867 -28.98468 -26.98893 -26.69988 -25.00771 -23.54413 -23.30327 -21.62628 -20.53405 -19.31283 -18.67158 -18.22254 -17.87161 -17.76063 -17.03128 -16.91395 -16.62406 -16.28199 -16.05076 -15.67996 -15.51840 -15.10508 -15.04269 -14.47884 -14.45895 -14.23008 -14.01566 -13.86492 -13.41396 -13.35953 -12.97205 -12.90967 -12.49712 -12.18818 -12.00162 -11.84508 -11.31060 -11.16687 -10.72894 -10.62621 -10.30976 -10.13864 -9.85461 -4.92820 -0.54368 -0.02010 1.14222 1.48510 1.58634 1.84445 1.99037 2.52415 2.90867 3.16931 3.24555 3.44682 3.52923 3.56097 3.60631 3.66320 3.75668 3.91780 3.98236 4.06991 4.23672 4.27685 4.49340 4.59713 4.63796 4.72918 4.77068 4.82017 4.85924 4.87705 4.96471 5.04539 5.06592 5.14945 5.26549 5.44118 5.58029 6.37912 6.57077 6.88078 7.04569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.074 4.074 3 Si 0.747 3.253 4 C -0.165 4.165 5 C -0.033 4.033 6 C -0.156 4.156 7 C 0.555 3.445 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.129 3.871 11 C -0.109 4.109 12 H 0.102 0.898 13 C -0.132 4.132 14 C 0.074 3.926 15 H 0.079 0.921 16 O -0.572 6.572 17 C -0.159 4.159 18 C -0.042 4.042 19 C -0.140 4.140 20 C 0.122 3.878 21 F -0.099 7.099 22 H 0.393 0.607 23 H 0.111 0.889 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.129 0.871 27 H 0.416 0.584 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.398 0.602 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.174 0.826 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 0.037 -9.244 9.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.184 4.184 3 Si 0.652 3.348 4 C -0.166 4.166 5 C -0.052 4.052 6 C -0.159 4.159 7 C 0.344 3.656 8 O -0.463 6.463 9 N -0.359 5.359 10 C 0.006 3.994 11 C -0.127 4.127 12 H 0.121 0.879 13 C -0.170 4.170 14 C 0.015 3.985 15 H 0.097 0.903 16 O -0.381 6.381 17 C -0.197 4.197 18 C -0.061 4.061 19 C -0.159 4.159 20 C 0.102 3.898 21 F -0.077 7.077 22 H 0.242 0.758 23 H 0.129 0.871 24 H -0.214 1.214 25 H -0.213 1.213 26 H 0.147 0.853 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.249 0.751 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.192 0.808 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.025 0.142 -7.126 7.127 hybrid contribution -0.317 -0.555 -0.019 0.639 sum -0.292 -0.412 -7.145 7.163 Atomic orbital electron populations 1.86521 1.16764 1.81970 1.50404 1.25065 0.85503 1.11051 0.96775 0.93884 0.78201 0.76834 0.85885 1.20280 1.04665 0.96353 0.95343 1.20997 0.92929 0.92222 0.99040 1.19984 1.05716 0.94741 0.95478 1.18441 0.77353 0.85831 0.83999 1.90794 1.57797 1.68586 1.29170 1.45778 1.62564 1.17324 1.10244 1.21441 0.98179 0.82186 0.97613 1.22672 0.98459 0.97413 0.94202 0.87948 1.23107 1.00421 0.96358 0.97079 1.22723 0.93286 0.97191 0.85313 0.90314 1.86418 1.49425 1.85575 1.16634 1.23709 0.96618 0.98788 1.00571 1.21549 0.94110 0.93808 0.96590 1.21473 0.99966 0.95493 0.98929 1.17880 0.97292 0.80441 0.94162 1.91187 1.84357 1.37426 1.94735 0.75755 0.87109 1.21385 1.21255 0.85291 0.74555 0.92256 0.91573 0.91179 0.87626 0.75142 0.88719 0.89853 0.80840 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.67 12.88 -148.98 -1.92 -3.59 16 2 C -0.07 -0.18 2.81 71.24 0.20 0.02 16 3 Si 0.75 1.28 29.55 68.60 2.03 3.31 16 4 C -0.17 -0.22 4.78 -19.86 -0.09 -0.31 16 5 C -0.03 -0.13 9.21 22.52 0.21 0.08 16 6 C -0.16 -0.15 5.87 -20.09 -0.12 -0.27 16 7 C 0.56 2.69 7.77 86.75 0.67 3.36 16 8 O -0.58 -8.37 16.34 -3.93 -0.06 -8.43 16 9 N -0.71 1.59 5.51 -466.08 -2.57 -0.98 16 10 C 0.13 -0.17 5.51 86.38 0.48 0.30 16 11 C -0.11 0.52 3.69 -10.26 -0.04 0.48 16 12 H 0.10 -0.49 8.14 -2.39 -0.02 -0.50 16 13 C -0.13 0.44 7.47 31.12 0.23 0.67 16 14 C 0.07 -0.33 5.28 31.12 0.16 -0.16 16 15 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 16 O -0.57 1.31 13.59 -148.98 -2.02 -0.72 16 17 C -0.16 1.03 7.46 31.12 0.23 1.26 16 18 C -0.04 0.29 9.54 22.52 0.21 0.50 16 19 C -0.14 1.05 10.01 22.27 0.22 1.28 16 20 C 0.12 -0.39 6.63 22.47 0.15 -0.24 16 21 F -0.10 0.51 13.46 44.97 0.61 1.12 16 22 H 0.39 -1.92 8.45 -74.06 -0.63 -2.54 16 23 H 0.11 0.41 7.77 -2.39 -0.02 0.39 16 24 H -0.29 -2.32 7.11 99.48 0.71 -1.61 16 25 H -0.29 -2.00 7.11 99.48 0.71 -1.30 16 26 H 0.13 0.90 7.59 -2.91 -0.02 0.87 16 27 H 0.42 -3.79 6.50 -92.71 -0.60 -4.39 16 28 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.07 0.03 7.84 -2.39 -0.02 0.01 16 30 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.11 -0.53 8.10 -2.39 -0.02 -0.55 16 32 H 0.40 -4.10 9.12 -74.06 -0.68 -4.77 16 33 H 0.09 -0.63 7.90 -2.39 -0.02 -0.65 16 34 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.17 -2.51 6.40 -2.91 -0.02 -2.53 16 36 H 0.18 -2.53 8.06 -2.91 -0.02 -2.56 16 Total: 0.00 -21.47 310.00 -2.15 -23.62 By element: Atomic # 1 Polarization: -20.57 SS G_CDS: -0.73 Total: -21.30 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 2.52 Total: 6.98 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -2.57 Total: -0.98 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -4.01 Total: -12.74 kcal Atomic # 9 Polarization: 0.51 SS G_CDS: 0.61 Total: 1.12 kcal Atomic # 14 Polarization: 1.28 SS G_CDS: 2.03 Total: 3.31 kcal Total: -21.47 -2.15 -23.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_12496548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.235 kcal (2) G-P(sol) polarization free energy of solvation -21.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds