Wall clock time and date at job start Tue Mar 9 2021 13:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47560 * 125.94613 * 180.28489 * 7 6 5 9 9 C 1.39921 * 119.95672 * 359.72916 * 8 7 6 10 10 C 1.36433 * 120.28012 * 179.75983 * 9 8 7 11 11 C 1.39873 * 120.18490 * 0.51431 * 10 9 8 12 12 C 1.47294 * 120.04781 * 179.76178 * 11 10 9 13 13 O 1.21620 * 120.00126 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00534 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47251 * 179.97438 * 15 14 12 17 17 H 1.09002 * 112.85578 * 314.66835 * 16 15 14 18 18 C 1.53788 * 113.61149 * 85.86608 * 16 15 14 19 19 C 1.53956 * 87.01711 * 139.95115 * 18 16 15 20 20 H 1.09002 * 113.66301 * 220.06486 * 19 18 16 21 21 O 1.42901 * 113.61814 * 89.19923 * 19 18 16 22 22 C 1.53773 * 87.11044 * 334.63299 * 19 18 16 23 23 C 1.40409 * 119.90516 * 359.73601 * 11 10 9 24 24 O 1.35686 * 120.13473 * 179.97438 * 23 11 10 25 25 C 1.38269 * 119.72816 * 0.02562 * 23 11 10 26 26 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 27 27 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 28 28 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 29 29 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 30 30 H 1.48497 * 110.00030 * 61.31762 * 3 2 1 31 31 H 1.08005 * 126.47473 * 359.97438 * 5 4 2 32 32 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 33 33 H 1.08004 * 119.86060 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.90818 * 180.23060 * 10 9 8 35 35 H 0.97010 * 119.99913 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.46317 * 299.99889 * 15 14 12 37 37 H 1.08996 * 109.46470 * 59.99106 * 15 14 12 38 38 H 1.09006 * 113.60879 * 254.52270 * 18 16 15 39 39 H 1.08993 * 113.61662 * 25.42608 * 18 16 15 40 40 H 0.96707 * 114.00041 * 82.46056 * 21 19 18 41 41 H 1.08997 * 113.61909 * 270.81392 * 22 19 18 42 42 H 1.09005 * 113.69113 * 139.92487 * 22 19 18 43 43 H 0.96691 * 114.00443 * 270.02927 * 24 23 11 44 44 H 1.08003 * 120.09673 * 179.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6577 -0.8543 4.4128 9 6 3.8738 -1.9164 5.2977 10 6 4.5703 -1.7177 6.4539 11 6 5.0643 -0.4473 6.7679 12 6 5.8113 -0.2351 8.0194 13 8 6.2408 0.8698 8.2914 14 7 6.0189 -1.2652 8.8633 15 6 6.7614 -1.0541 10.1084 16 6 6.8537 -2.3736 10.8772 17 1 5.9044 -2.9079 10.9166 18 6 8.0391 -3.2546 10.4486 19 6 8.2286 -3.5855 11.9402 20 1 9.2728 -3.6238 12.2506 21 8 7.4787 -4.7218 12.3743 22 6 7.5442 -2.2426 12.2450 23 6 4.8474 0.6252 5.8880 24 8 5.3241 1.8596 6.1882 25 6 4.1453 0.4185 4.7149 26 8 2.6271 -0.1463 2.2303 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 1.5615 2.4679 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 1.2458 -2.7432 0.8933 32 1 2.4304 -3.2076 3.2685 33 1 3.4913 -2.8987 5.0624 34 1 4.7368 -2.5426 7.1308 35 1 5.6759 -2.1464 8.6466 36 1 7.7648 -0.6971 9.8768 37 1 6.2442 -0.3137 10.7187 38 1 7.7484 -4.1134 9.8434 39 1 8.8674 -2.6925 10.0173 40 1 7.9041 -5.5695 12.1852 41 1 8.2369 -1.4033 12.3058 42 1 6.8544 -2.2840 13.0880 43 1 4.7076 2.4072 6.6931 44 1 3.9747 1.2394 4.0340 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12857620_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:30 Heat of formation + Delta-G solvation = -79.132652 kcal Electronic energy + Delta-G solvation = -28957.009032 eV Core-core repulsion = 24616.197773 eV Total energy + Delta-G solvation = -4340.811259 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.76155 -41.55436 -40.62623 -39.44960 -38.21548 -37.84924 -36.47242 -34.97078 -34.24936 -33.43053 -31.36309 -30.66112 -28.92339 -26.94370 -26.81324 -24.58758 -24.12723 -23.49071 -22.39841 -21.93657 -21.35535 -20.69052 -19.76968 -18.92045 -18.57866 -18.04040 -17.71849 -17.49912 -17.30638 -16.72932 -16.59730 -16.27068 -16.19377 -15.98334 -15.85157 -15.49125 -15.38195 -14.85531 -14.48412 -14.35503 -14.21837 -14.03285 -13.86729 -13.79133 -13.61835 -13.52922 -13.50195 -12.99691 -12.96704 -12.76197 -12.23859 -12.07481 -11.98242 -11.82806 -11.30547 -11.15609 -10.91108 -10.85947 -10.67217 -10.64257 -10.07922 -9.97268 -9.03844 -5.01172 -0.79876 0.09401 0.63837 1.08356 1.41378 1.43157 1.67933 1.89346 1.98769 2.08445 2.63536 2.96922 3.00160 3.11998 3.31480 3.41766 3.47255 3.52509 3.60270 3.71176 3.82127 3.83417 3.89012 3.92402 4.14359 4.20593 4.28727 4.34607 4.37536 4.55063 4.58475 4.63016 4.64985 4.72104 4.73715 4.77082 4.83264 4.92007 4.98112 5.05637 5.06803 5.15616 5.22513 5.35745 5.41879 5.45348 5.92503 6.19568 6.45374 6.57102 6.67877 7.22976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.034 4.034 3 Si 0.698 3.302 4 C -0.044 4.044 5 C -0.173 4.173 6 C -0.177 4.177 7 C 0.024 3.976 8 C 0.030 3.970 9 C -0.116 4.116 10 C -0.064 4.064 11 C -0.165 4.165 12 C 0.557 3.443 13 O -0.519 6.519 14 N -0.727 5.727 15 C 0.129 3.871 16 C -0.118 4.118 17 H 0.100 0.900 18 C -0.168 4.168 19 C 0.077 3.923 20 H 0.070 0.930 21 O -0.552 6.552 22 C -0.124 4.124 23 C 0.178 3.822 24 O -0.474 6.474 25 C -0.141 4.141 26 O -0.162 6.162 27 H 0.381 0.619 28 H 0.138 0.862 29 H -0.248 1.248 30 H -0.255 1.255 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.383 0.617 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.399 0.601 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -4.635 0.435 4.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.144 4.144 3 Si 0.597 3.403 4 C -0.094 4.094 5 C -0.192 4.192 6 C -0.196 4.196 7 C -0.026 4.026 8 C 0.029 3.971 9 C -0.134 4.134 10 C -0.083 4.083 11 C -0.168 4.168 12 C 0.344 3.656 13 O -0.395 6.395 14 N -0.380 5.380 15 C 0.006 3.994 16 C -0.137 4.137 17 H 0.118 0.882 18 C -0.206 4.206 19 C 0.018 3.982 20 H 0.088 0.912 21 O -0.358 6.358 22 C -0.162 4.162 23 C 0.132 3.868 24 O -0.285 6.285 25 C -0.159 4.159 26 O -0.059 6.059 27 H 0.229 0.771 28 H 0.156 0.844 29 H -0.172 1.172 30 H -0.179 1.179 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.231 0.769 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.257 0.743 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.093 -2.688 0.025 2.902 hybrid contribution -1.273 -1.239 0.455 1.834 sum -0.180 -3.927 0.480 3.960 Atomic orbital electron populations 1.86667 1.16645 1.80154 1.49246 1.24356 0.84011 1.12207 0.93832 0.94407 0.91484 0.73299 0.81087 1.22938 1.00595 0.93789 0.92071 1.21586 1.04020 0.95649 0.97962 1.21911 1.02043 0.98382 0.97307 1.20326 1.03744 0.87550 0.90981 1.17750 0.95682 0.93691 0.89963 1.20704 1.00211 0.98692 0.93801 1.20817 0.95379 0.95541 0.96576 1.20503 1.04688 0.95091 0.96539 1.17973 0.79939 0.84594 0.83099 1.90849 1.49782 1.23632 1.75227 1.45903 1.57857 1.12245 1.21981 1.21423 0.96867 0.97025 0.84133 1.22753 0.99247 0.95478 0.96213 0.88168 1.23784 0.98754 1.00506 0.97530 1.22713 0.94606 0.87089 0.93824 0.91167 1.86463 1.49680 1.16305 1.83325 1.23017 1.00099 0.95912 0.97177 1.18283 0.91375 0.85768 0.91416 1.84773 1.44632 1.22730 1.76401 1.21589 0.98714 0.97516 0.98091 1.83949 1.57543 1.37929 1.26469 0.77109 0.84406 1.17174 1.17923 0.82669 0.82615 0.84348 0.84629 0.76567 0.91021 0.91050 0.90721 0.89004 0.76927 0.88292 0.90032 0.74269 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.20 12.88 -35.23 -0.45 -0.65 16 2 C -0.03 0.03 2.98 36.01 0.11 0.13 16 3 Si 0.70 -0.59 32.11 -169.99 -5.46 -6.05 16 4 C -0.04 -0.02 6.21 -35.51 -0.22 -0.24 16 5 C -0.17 -0.06 10.78 -39.82 -0.43 -0.49 16 6 C -0.18 0.00 10.26 -39.38 -0.40 -0.40 16 7 C 0.02 0.02 7.02 -36.55 -0.26 -0.23 16 8 C 0.03 0.01 5.87 -104.95 -0.62 -0.60 16 9 C -0.12 0.16 9.48 -39.60 -0.38 -0.21 16 10 C -0.06 0.10 9.47 -39.62 -0.38 -0.28 16 11 C -0.16 -0.20 5.89 -104.79 -0.62 -0.82 16 12 C 0.56 1.46 7.75 -12.58 -0.10 1.36 16 13 O -0.52 -3.27 15.14 -16.69 -0.25 -3.53 16 14 N -0.73 0.26 5.50 -61.43 -0.34 -0.07 16 15 C 0.13 -0.05 5.50 -4.04 -0.02 -0.08 16 16 C -0.12 0.21 3.68 -89.81 -0.33 -0.12 16 17 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 18 C -0.17 0.38 7.48 -25.82 -0.19 0.19 16 19 C 0.08 -0.12 5.28 -25.83 -0.14 -0.26 16 20 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 21 O -0.55 0.28 13.59 -35.23 -0.48 -0.20 16 22 C -0.12 0.18 7.47 -25.92 -0.19 -0.02 16 23 C 0.18 0.35 6.71 -38.75 -0.26 0.09 16 24 O -0.47 -1.29 11.56 -40.71 -0.47 -1.76 16 25 C -0.14 -0.15 9.65 -39.06 -0.38 -0.52 16 26 O -0.16 -0.22 8.79 4.72 0.04 -0.18 16 27 H 0.38 -0.88 8.70 45.56 0.40 -0.48 16 28 H 0.14 -0.31 7.96 -51.93 -0.41 -0.73 16 29 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 30 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 31 H 0.16 -0.13 8.06 -52.48 -0.42 -0.55 16 32 H 0.16 -0.37 7.24 -52.49 -0.38 -0.75 16 33 H 0.14 -0.51 6.95 -52.48 -0.36 -0.88 16 34 H 0.14 -0.61 6.37 -52.49 -0.33 -0.94 16 35 H 0.40 -1.17 6.48 -40.82 -0.26 -1.44 16 36 H 0.07 0.03 7.88 -51.93 -0.41 -0.38 16 37 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 38 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 39 H 0.09 -0.21 7.92 -51.93 -0.41 -0.63 16 40 H 0.38 -1.70 9.12 45.56 0.42 -1.28 16 41 H 0.10 -0.24 8.10 -51.93 -0.42 -0.66 16 42 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 43 H 0.40 -0.40 9.06 45.56 0.41 0.02 16 44 H 0.14 0.06 7.90 -52.48 -0.41 -0.35 16 LS Contribution 377.71 15.07 5.69 5.69 Total: 0.00 -10.54 377.71 -10.44 -20.98 By element: Atomic # 1 Polarization: -7.81 SS G_CDS: -3.92 Total: -11.73 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -4.80 Total: -2.51 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -0.34 Total: -0.07 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -1.61 Total: -6.32 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.46 Total: -6.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -10.54 -10.44 -20.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.153 kcal (2) G-P(sol) polarization free energy of solvation -10.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds