Wall clock time and date at job start Tue Mar 9 2021 13:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47560 * 125.94613 * 180.28489 * 7 6 5 9 9 C 1.39921 * 119.95672 * 359.72916 * 8 7 6 10 10 C 1.36433 * 120.28012 * 179.75983 * 9 8 7 11 11 C 1.39873 * 120.18490 * 0.51431 * 10 9 8 12 12 C 1.47294 * 120.04781 * 179.76178 * 11 10 9 13 13 O 1.21620 * 120.00126 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00534 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47251 * 179.97438 * 15 14 12 17 17 H 1.09002 * 112.85578 * 314.66835 * 16 15 14 18 18 C 1.53788 * 113.61149 * 85.86608 * 16 15 14 19 19 C 1.53956 * 87.01711 * 139.95115 * 18 16 15 20 20 H 1.09002 * 113.66301 * 220.06486 * 19 18 16 21 21 O 1.42901 * 113.61814 * 89.19923 * 19 18 16 22 22 C 1.53773 * 87.11044 * 334.63299 * 19 18 16 23 23 C 1.40409 * 119.90516 * 359.73601 * 11 10 9 24 24 O 1.35686 * 120.13473 * 179.97438 * 23 11 10 25 25 C 1.38269 * 119.72816 * 0.02562 * 23 11 10 26 26 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 27 27 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 28 28 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 29 29 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 30 30 H 1.48497 * 110.00030 * 61.31762 * 3 2 1 31 31 H 1.08005 * 126.47473 * 359.97438 * 5 4 2 32 32 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 33 33 H 1.08004 * 119.86060 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.90818 * 180.23060 * 10 9 8 35 35 H 0.97010 * 119.99913 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.46317 * 299.99889 * 15 14 12 37 37 H 1.08996 * 109.46470 * 59.99106 * 15 14 12 38 38 H 1.09006 * 113.60879 * 254.52270 * 18 16 15 39 39 H 1.08993 * 113.61662 * 25.42608 * 18 16 15 40 40 H 0.96707 * 114.00041 * 82.46056 * 21 19 18 41 41 H 1.08997 * 113.61909 * 270.81392 * 22 19 18 42 42 H 1.09005 * 113.69113 * 139.92487 * 22 19 18 43 43 H 0.96691 * 114.00443 * 270.02927 * 24 23 11 44 44 H 1.08003 * 120.09673 * 179.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6577 -0.8543 4.4128 9 6 3.8738 -1.9164 5.2977 10 6 4.5703 -1.7177 6.4539 11 6 5.0643 -0.4473 6.7679 12 6 5.8113 -0.2351 8.0194 13 8 6.2408 0.8698 8.2914 14 7 6.0189 -1.2652 8.8633 15 6 6.7614 -1.0541 10.1084 16 6 6.8537 -2.3736 10.8772 17 1 5.9044 -2.9079 10.9166 18 6 8.0391 -3.2546 10.4486 19 6 8.2286 -3.5855 11.9402 20 1 9.2728 -3.6238 12.2506 21 8 7.4787 -4.7218 12.3743 22 6 7.5442 -2.2426 12.2450 23 6 4.8474 0.6252 5.8880 24 8 5.3241 1.8596 6.1882 25 6 4.1453 0.4185 4.7149 26 8 2.6271 -0.1463 2.2303 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 1.5615 2.4679 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 1.2458 -2.7432 0.8933 32 1 2.4304 -3.2076 3.2685 33 1 3.4913 -2.8987 5.0624 34 1 4.7368 -2.5426 7.1308 35 1 5.6759 -2.1464 8.6466 36 1 7.7648 -0.6971 9.8768 37 1 6.2442 -0.3137 10.7187 38 1 7.7484 -4.1134 9.8434 39 1 8.8674 -2.6925 10.0173 40 1 7.9041 -5.5695 12.1852 41 1 8.2369 -1.4033 12.3058 42 1 6.8544 -2.2840 13.0880 43 1 4.7076 2.4072 6.6931 44 1 3.9747 1.2394 4.0340 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:30 Heat of formation + Delta-G solvation = -82.748106 kcal Electronic energy + Delta-G solvation = -28957.165810 eV Core-core repulsion = 24616.197773 eV Total energy + Delta-G solvation = -4340.968036 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.74915 -41.61370 -40.52544 -39.53036 -38.21454 -37.89225 -36.45734 -35.01108 -34.23443 -33.40766 -31.35592 -30.65057 -28.90372 -26.90066 -26.67705 -24.56985 -24.09191 -23.42396 -22.39122 -21.99180 -21.36059 -20.58408 -19.78245 -18.91848 -18.59558 -17.93018 -17.73143 -17.51023 -17.33924 -16.75070 -16.55736 -16.32606 -16.16564 -15.96747 -15.82622 -15.44735 -15.42639 -14.75495 -14.46311 -14.39012 -14.27453 -13.98032 -13.82634 -13.79702 -13.59501 -13.51463 -13.35158 -12.96337 -12.93074 -12.72472 -12.19685 -12.15925 -11.93842 -11.81212 -11.17254 -11.14286 -10.99909 -10.85107 -10.64400 -10.60985 -10.15039 -9.96664 -9.02387 -4.98912 -0.80550 0.13200 0.63447 1.12098 1.42584 1.44252 1.68681 1.87383 1.91494 2.04980 2.63021 3.00697 3.17508 3.20852 3.34950 3.51783 3.58514 3.63354 3.71136 3.78541 3.86282 3.97552 3.98298 4.00241 4.21616 4.27820 4.35913 4.42542 4.50360 4.62893 4.65799 4.69537 4.77505 4.78711 4.83726 4.88134 4.89916 5.05234 5.05738 5.09654 5.17419 5.20451 5.30652 5.42590 5.46391 5.52396 5.95392 6.31117 6.45165 6.67897 6.88226 7.14245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.032 4.032 3 Si 0.761 3.239 4 C -0.051 4.051 5 C -0.182 4.182 6 C -0.171 4.171 7 C 0.005 3.995 8 C 0.026 3.974 9 C -0.109 4.109 10 C -0.051 4.051 11 C -0.180 4.180 12 C 0.553 3.447 13 O -0.566 6.566 14 N -0.711 5.711 15 C 0.131 3.869 16 C -0.109 4.109 17 H 0.101 0.899 18 C -0.160 4.160 19 C 0.075 3.925 20 H 0.079 0.921 21 O -0.572 6.572 22 C -0.131 4.131 23 C 0.160 3.840 24 O -0.495 6.495 25 C -0.153 4.153 26 O -0.177 6.177 27 H 0.390 0.610 28 H 0.157 0.843 29 H -0.281 1.281 30 H -0.295 1.295 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.414 0.586 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.398 0.602 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.408 0.592 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -7.329 0.224 7.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.142 4.142 3 Si 0.665 3.335 4 C -0.101 4.101 5 C -0.201 4.201 6 C -0.190 4.190 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.127 4.127 10 C -0.070 4.070 11 C -0.183 4.183 12 C 0.341 3.659 13 O -0.446 6.446 14 N -0.364 5.364 15 C 0.008 3.992 16 C -0.128 4.128 17 H 0.120 0.880 18 C -0.198 4.198 19 C 0.015 3.985 20 H 0.097 0.903 21 O -0.380 6.380 22 C -0.169 4.169 23 C 0.114 3.886 24 O -0.308 6.308 25 C -0.171 4.171 26 O -0.075 6.075 27 H 0.240 0.760 28 H 0.175 0.825 29 H -0.207 1.207 30 H -0.222 1.222 31 H 0.185 0.815 32 H 0.200 0.800 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.248 0.752 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.945 -5.441 -0.179 5.525 hybrid contribution -1.281 -0.393 0.532 1.441 sum -0.336 -5.833 0.352 5.854 Atomic orbital electron populations 1.86639 1.17198 1.80367 1.50041 1.24454 0.83549 1.11936 0.94269 0.93617 0.90624 0.72197 0.77039 1.23162 1.00591 0.94199 0.92142 1.21846 1.04097 0.95717 0.98398 1.22249 1.00827 0.98912 0.97027 1.20566 1.04626 0.87993 0.91253 1.17947 0.95413 0.93860 0.90259 1.21055 0.99290 0.99383 0.92975 1.21157 0.93798 0.95124 0.96893 1.20535 1.05573 0.96176 0.96059 1.18263 0.79559 0.84383 0.83668 1.90819 1.51925 1.25500 1.76338 1.45795 1.56934 1.12348 1.21337 1.21388 0.96169 0.97626 0.84016 1.22667 0.99615 0.94652 0.95831 0.88036 1.23733 0.98321 1.00464 0.97249 1.22757 0.94863 0.86638 0.94207 0.90289 1.86420 1.50571 1.17412 1.83617 1.23094 1.00244 0.96673 0.96885 1.18489 0.92244 0.85729 0.92150 1.84726 1.45708 1.23599 1.76774 1.21570 0.99448 0.98148 0.97946 1.83937 1.57957 1.38627 1.26931 0.76047 0.82532 1.20709 1.22177 0.81511 0.80045 0.81243 0.81229 0.74830 0.91872 0.92260 0.89911 0.88818 0.75160 0.87635 0.91115 0.73219 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.31 12.88 -148.98 -1.92 -2.23 16 2 C -0.03 0.05 2.98 71.24 0.21 0.27 16 3 Si 0.76 -0.49 32.11 68.60 2.20 1.71 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.12 16 5 C -0.18 0.10 10.78 22.11 0.24 0.34 16 6 C -0.17 0.31 10.26 22.40 0.23 0.54 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.01 5.87 -20.08 -0.12 -0.10 16 9 C -0.11 0.53 9.48 22.26 0.21 0.74 16 10 C -0.05 0.24 9.47 22.24 0.21 0.45 16 11 C -0.18 -0.50 5.89 -19.97 -0.12 -0.62 16 12 C 0.55 3.38 7.75 86.63 0.67 4.05 16 13 O -0.57 -8.37 15.14 16.90 0.26 -8.11 16 14 N -0.71 0.68 5.50 -466.52 -2.57 -1.89 16 15 C 0.13 -0.05 5.50 86.38 0.47 0.42 16 16 C -0.11 0.43 3.68 -10.27 -0.04 0.39 16 17 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 18 C -0.16 0.89 7.48 31.18 0.23 1.12 16 19 C 0.07 -0.28 5.28 31.18 0.16 -0.12 16 20 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 21 O -0.57 1.02 13.59 -148.98 -2.02 -1.00 16 22 C -0.13 0.37 7.47 31.12 0.23 0.60 16 23 C 0.16 0.89 6.71 22.81 0.15 1.04 16 24 O -0.50 -4.04 11.56 -69.05 -0.80 -4.84 16 25 C -0.15 -0.53 9.65 22.61 0.22 -0.31 16 26 O -0.18 -0.56 8.79 -6.03 -0.05 -0.62 16 27 H 0.39 -1.67 8.70 -74.06 -0.64 -2.31 16 28 H 0.16 -0.88 7.96 -2.39 -0.02 -0.90 16 29 H -0.28 -1.33 7.11 99.48 0.71 -0.62 16 30 H -0.30 -1.72 7.11 99.48 0.71 -1.01 16 31 H 0.17 -0.56 8.06 -2.91 -0.02 -0.59 16 32 H 0.18 -1.45 7.24 -2.91 -0.02 -1.47 16 33 H 0.17 -1.90 6.95 -2.91 -0.02 -1.92 16 34 H 0.17 -2.08 6.37 -2.91 -0.02 -2.10 16 35 H 0.41 -3.08 6.48 -92.70 -0.60 -3.68 16 36 H 0.06 0.11 7.88 -2.39 -0.02 0.09 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 -0.57 8.14 -2.38 -0.02 -0.58 16 39 H 0.09 -0.52 7.92 -2.39 -0.02 -0.54 16 40 H 0.40 -3.90 9.12 -74.05 -0.68 -4.57 16 41 H 0.11 -0.47 8.10 -2.39 -0.02 -0.49 16 42 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 43 H 0.41 0.48 9.06 -74.06 -0.67 -0.19 16 44 H 0.14 0.46 7.90 -2.91 -0.02 0.44 16 Total: 0.00 -26.07 377.71 -3.06 -29.13 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -1.46 Total: -21.27 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.30 Total: 9.11 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -2.57 Total: -1.89 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -4.54 Total: -16.80 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: 2.20 Total: 1.71 kcal Total: -26.07 -3.06 -29.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.617 kcal (2) G-P(sol) polarization free energy of solvation -26.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds