Wall clock time and date at job start Tue Mar 9 2021 13:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38979 * 119.95801 * 2 1 4 4 O 1.35715 * 119.90727 * 0.02562 * 3 2 1 5 5 C 1.39015 * 120.17835 * 180.02562 * 3 2 1 6 6 C 1.50705 * 119.95612 * 179.97438 * 5 3 2 7 7 O 1.42902 * 109.46979 * 285.00116 * 6 5 3 8 8 Si 1.86297 * 109.47213 * 164.99958 * 6 5 3 9 9 C 1.37679 * 120.08696 * 359.67561 * 5 3 2 10 10 C 1.39753 * 119.91172 * 0.59998 * 9 5 3 11 11 C 1.47599 * 120.08588 * 179.70143 * 10 9 5 12 12 O 1.21581 * 120.00499 * 359.72123 * 11 10 9 13 13 N 1.34782 * 119.99593 * 179.72696 * 11 10 9 14 14 C 1.46503 * 119.99635 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46818 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.85017 * 45.33137 * 15 14 13 17 17 C 1.53786 * 113.61503 * 176.52755 * 15 14 13 18 18 C 1.53783 * 87.08050 * 140.06140 * 17 15 14 19 19 H 1.09000 * 113.61254 * 219.93295 * 18 17 15 20 20 O 1.42901 * 113.61032 * 89.11718 * 18 17 15 21 21 C 1.53781 * 113.61337 * 274.13548 * 15 14 13 22 22 C 1.37719 * 119.95752 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47231 * 269.97795 * 1 2 3 24 24 H 1.09004 * 109.47486 * 29.97910 * 1 2 3 25 25 H 1.09002 * 109.47814 * 149.97917 * 1 2 3 26 26 H 0.96697 * 113.99895 * 90.00406 * 4 3 2 27 27 H 1.08998 * 109.46903 * 44.99537 * 6 5 3 28 28 H 0.96695 * 114.00068 * 299.99878 * 7 6 5 29 29 H 1.48499 * 109.99904 * 180.02562 * 8 6 5 30 30 H 1.48500 * 109.99728 * 301.31916 * 8 6 5 31 31 H 1.08002 * 120.04434 * 180.32514 * 9 5 3 32 32 H 0.96996 * 120.00351 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47388 * 60.00196 * 14 13 11 34 34 H 1.09004 * 109.47244 * 299.99375 * 14 13 11 35 35 H 1.08992 * 113.61675 * 254.61398 * 17 15 14 36 36 H 1.09000 * 113.60973 * 25.51686 * 17 15 14 37 37 H 0.96701 * 114.00084 * 179.97438 * 20 18 17 38 38 H 1.08999 * 113.61567 * 334.48261 * 21 15 14 39 39 H 1.08998 * 113.61196 * 105.38615 * 21 15 14 40 40 H 1.08002 * 120.04693 * 359.95507 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5196 2.3778 0.0005 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5181 -0.0011 7 8 4.2715 3.1043 -1.3026 8 14 6.1199 2.2159 0.4529 9 6 4.2858 0.0208 0.0057 10 6 3.5918 -1.1921 -0.0002 11 6 4.3328 -2.4686 -0.0002 12 8 5.5486 -2.4659 -0.0003 13 7 3.6615 -3.6374 -0.0003 14 6 4.3970 -4.9045 -0.0009 15 6 3.4054 -6.0697 -0.0002 16 1 2.5928 -5.9344 -0.7139 17 6 4.0773 -7.4504 -0.0861 18 6 3.0314 -7.9353 0.9317 19 1 3.4357 -8.6126 1.6841 20 8 1.8320 -8.4266 0.3300 21 6 2.9299 -6.4730 1.4055 22 6 2.1946 -1.1932 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3635 -0.8898 -0.5141 26 1 1.3225 2.7178 0.8841 27 1 3.8880 3.1941 0.7255 28 1 4.6549 2.5564 -2.0010 29 1 6.8678 3.4988 0.4564 30 1 6.2017 1.5772 1.7910 31 1 5.3658 0.0258 0.0106 32 1 2.6916 -3.6397 0.0001 33 1 5.0241 -4.9610 0.8889 34 1 5.0234 -4.9606 -0.8912 35 1 3.9849 -7.9208 -1.0649 36 1 5.0978 -7.4638 0.2965 37 1 1.1705 -8.7335 0.9650 38 1 3.6373 -6.2198 2.1952 39 1 1.9118 -6.1549 1.6300 40 1 1.6547 -2.1286 -0.0002 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_13287732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:54 Heat of formation + Delta-G solvation = -112.120841 kcal Electronic energy + Delta-G solvation = -23476.182980 eV Core-core repulsion = 19837.301860 eV Total energy + Delta-G solvation = -3638.881120 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.74238 -40.75048 -40.00111 -37.86434 -37.51458 -36.52871 -35.00905 -33.98446 -32.01222 -28.90737 -27.99951 -26.85857 -26.68486 -24.82812 -23.29850 -22.03857 -21.59154 -20.50320 -19.58255 -18.90826 -18.09888 -17.94260 -17.37194 -16.89895 -16.61944 -16.41168 -16.13093 -15.97243 -15.58411 -15.50271 -15.05149 -14.73980 -14.46081 -14.34378 -14.17305 -13.91776 -13.79477 -13.35171 -13.29517 -12.99035 -12.90832 -12.77344 -12.35894 -12.21152 -12.15463 -11.83470 -11.62595 -11.19348 -11.13340 -10.62445 -10.47158 -10.23468 -9.98067 -9.65981 -5.05294 -0.41191 0.06071 1.20640 1.53401 1.61980 1.84387 2.03666 2.55880 3.09719 3.17983 3.36258 3.48206 3.56540 3.62495 3.66262 3.74162 3.78113 3.96383 4.03123 4.15651 4.28293 4.32253 4.41906 4.52266 4.60902 4.67165 4.71328 4.78693 4.78954 4.84478 4.88668 5.02771 5.05550 5.08097 5.17001 5.19303 5.30153 5.31074 5.46158 5.58159 6.42082 6.68664 6.70397 6.88006 7.09334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C 0.153 3.847 4 O -0.495 6.495 5 C -0.158 4.158 6 C -0.052 4.052 7 O -0.548 6.548 8 Si 0.743 3.257 9 C -0.056 4.056 10 C -0.150 4.150 11 C 0.557 3.443 12 O -0.575 6.575 13 N -0.710 5.710 14 C 0.130 3.870 15 C -0.110 4.110 16 H 0.099 0.901 17 C -0.130 4.130 18 C 0.074 3.926 19 H 0.079 0.921 20 O -0.572 6.572 21 C -0.160 4.160 22 C -0.056 4.056 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.410 0.590 27 H 0.113 0.887 28 H 0.392 0.608 29 H -0.287 1.287 30 H -0.289 1.289 31 H 0.142 0.858 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.398 0.602 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -4.272 2.323 6.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C 0.108 3.892 4 O -0.309 6.309 5 C -0.159 4.159 6 C -0.163 4.163 7 O -0.355 6.355 8 Si 0.649 3.351 9 C -0.074 4.074 10 C -0.153 4.153 11 C 0.345 3.655 12 O -0.456 6.456 13 N -0.362 5.362 14 C 0.006 3.994 15 C -0.129 4.129 16 H 0.118 0.882 17 C -0.168 4.168 18 C 0.014 3.986 19 H 0.097 0.903 20 O -0.381 6.381 21 C -0.198 4.198 22 C -0.075 4.075 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.270 0.730 27 H 0.131 0.869 28 H 0.241 0.759 29 H -0.214 1.214 30 H -0.216 1.216 31 H 0.159 0.841 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.248 0.752 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.410 -3.560 2.078 5.349 hybrid contribution -1.023 0.184 1.191 1.581 sum -4.433 -3.376 3.269 6.460 Atomic orbital electron populations 1.20764 0.88324 1.04122 1.03639 1.20442 0.98320 0.91745 1.01670 1.18484 0.88817 0.85873 0.96044 1.84739 1.75509 1.35717 1.34921 1.20638 0.94228 0.95738 1.05339 1.24836 1.09140 0.92931 0.89403 1.86507 1.84864 1.47625 1.16552 0.93764 0.76191 0.80818 0.84322 1.21001 1.00040 0.90599 0.95766 1.19823 0.94290 0.92742 1.08480 1.18359 0.86821 0.84484 0.75816 1.90787 1.15005 1.88129 1.51657 1.45808 1.11145 1.05031 1.74254 1.21440 0.94457 0.81374 1.02094 1.22668 0.98248 0.92961 0.98982 0.88236 1.23094 0.98624 0.94689 1.00382 1.22792 0.86293 0.94035 0.95437 0.90275 1.86422 1.28548 1.84220 1.38892 1.23751 1.02942 0.96735 0.96345 1.21358 0.91784 0.98945 0.95369 0.89652 0.91226 0.89676 0.73028 0.86948 0.75852 1.21411 1.21619 0.84086 0.74888 0.91453 0.91942 0.91156 0.87454 0.75195 0.88663 0.90108 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.66 9.78 71.23 0.70 1.35 16 2 C -0.12 0.24 5.89 -19.81 -0.12 0.12 16 3 C 0.15 0.15 6.66 22.63 0.15 0.30 16 4 O -0.50 -0.06 11.84 -90.36 -1.07 -1.13 16 5 C -0.16 -0.30 5.27 -19.81 -0.10 -0.40 16 6 C -0.05 -0.09 2.37 71.24 0.17 0.08 16 7 O -0.55 -1.85 12.88 -148.98 -1.92 -3.77 16 8 Si 0.74 1.57 29.91 68.60 2.05 3.62 16 9 C -0.06 -0.16 8.20 22.50 0.18 0.03 16 10 C -0.15 -0.27 5.87 -20.08 -0.12 -0.38 16 11 C 0.56 2.53 7.76 86.71 0.67 3.20 16 12 O -0.57 -7.13 16.34 -3.97 -0.06 -7.20 16 13 N -0.71 1.24 5.51 -466.19 -2.57 -1.32 16 14 C 0.13 -0.20 5.50 86.38 0.48 0.28 16 15 C -0.11 0.49 3.68 -10.26 -0.04 0.45 16 16 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 17 C -0.13 0.44 7.47 31.12 0.23 0.68 16 18 C 0.07 -0.31 5.28 31.21 0.16 -0.15 16 19 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 20 O -0.57 1.09 13.59 -148.98 -2.02 -0.93 16 21 C -0.16 0.98 7.48 31.21 0.23 1.21 16 22 C -0.06 0.18 9.18 22.50 0.21 0.38 16 23 H 0.08 -0.69 8.14 -2.38 -0.02 -0.71 16 24 H 0.07 -0.25 7.52 -2.38 -0.02 -0.26 16 25 H 0.08 -0.71 8.08 -2.39 -0.02 -0.73 16 26 H 0.41 -3.44 9.06 -74.06 -0.67 -4.11 16 27 H 0.11 0.13 7.82 -2.39 -0.02 0.11 16 28 H 0.39 -1.51 8.70 -74.06 -0.64 -2.15 16 29 H -0.29 -2.34 7.11 99.48 0.71 -1.64 16 30 H -0.29 -2.24 7.11 99.48 0.71 -1.53 16 31 H 0.14 0.39 4.69 -2.91 -0.01 0.38 16 32 H 0.41 -3.09 6.49 -92.71 -0.60 -3.69 16 33 H 0.07 -0.01 7.87 -2.39 -0.02 -0.02 16 34 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 35 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.11 -0.58 8.10 -2.39 -0.02 -0.60 16 37 H 0.40 -3.92 9.12 -74.06 -0.68 -4.59 16 38 H 0.09 -0.62 7.92 -2.39 -0.02 -0.64 16 39 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.16 -1.56 6.39 -2.91 -0.02 -1.58 16 Total: 0.00 -22.68 335.31 -4.22 -26.91 By element: Atomic # 1 Polarization: -21.88 SS G_CDS: -1.44 Total: -23.32 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 2.81 Total: 7.15 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: -2.57 Total: -1.32 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -5.08 Total: -13.03 kcal Atomic # 14 Polarization: 1.57 SS G_CDS: 2.05 Total: 3.62 kcal Total: -22.68 -4.22 -26.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_13287732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.215 kcal (2) G-P(sol) polarization free energy of solvation -22.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds