Wall clock time and date at job start Tue Mar 9 2021 13:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47113 * 2 1 4 4 C 1.50705 * 109.47324 * 239.99964 * 2 1 3 5 5 C 1.38263 * 119.94288 * 300.00439 * 4 2 1 6 6 C 1.38140 * 120.05501 * 180.02562 * 5 4 2 7 7 C 1.38729 * 119.94655 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.06055 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00158 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47008 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00164 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99720 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 180.02562 * 12 10 9 14 14 C 1.52991 * 109.47429 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.84801 * 316.19512 * 14 13 12 16 16 C 1.53781 * 113.61611 * 87.50116 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.97702 * 16 14 13 18 18 H 1.08992 * 113.69868 * 220.05225 * 17 16 14 19 19 O 1.42907 * 113.61025 * 89.07067 * 17 16 14 20 20 C 1.53781 * 113.61529 * 184.99923 * 14 13 12 21 21 C 1.38738 * 119.88680 * 0.27548 * 7 6 5 22 22 C 1.38148 * 119.94208 * 359.47626 * 21 7 6 23 23 H 0.96698 * 114.00572 * 300.00237 * 1 2 3 24 24 H 1.09000 * 109.47437 * 120.00002 * 2 1 3 25 25 H 1.48501 * 109.99940 * 299.99847 * 3 2 1 26 26 H 1.48501 * 110.00053 * 61.31746 * 3 2 1 27 27 H 1.08003 * 119.97263 * 359.96820 * 5 4 2 28 28 H 1.08001 * 120.03083 * 180.02562 * 6 5 4 29 29 H 1.08993 * 109.47232 * 60.00091 * 9 8 7 30 30 H 1.09005 * 109.46922 * 300.00168 * 9 8 7 31 31 H 0.96996 * 120.00851 * 359.97438 * 12 10 9 32 32 H 1.08997 * 109.46666 * 59.99730 * 13 12 10 33 33 H 1.09002 * 109.46731 * 300.00370 * 13 12 10 34 34 H 1.09005 * 113.61471 * 254.53285 * 16 14 13 35 35 H 1.08996 * 113.61178 * 25.34627 * 16 14 13 36 36 H 0.96698 * 113.99817 * 82.62157 * 19 17 16 37 37 H 1.09002 * 113.61445 * 334.56787 * 20 14 13 38 38 H 1.09002 * 113.61408 * 105.38518 * 20 14 13 39 39 H 1.07999 * 120.02705 * 179.71962 * 21 7 6 40 40 H 1.07996 * 119.97056 * 180.22267 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5966 -2.0341 -1.4482 6 6 2.0562 -2.6877 -2.5750 7 6 2.8540 -2.0147 -3.4889 8 8 3.3071 -2.6553 -4.5986 9 6 4.1241 -1.9003 -5.4954 10 6 4.5284 -2.7689 -6.6586 11 8 4.1542 -3.9213 -6.7139 12 7 5.3059 -2.2652 -7.6375 13 6 5.6986 -3.1094 -8.7687 14 6 6.5734 -2.3012 -9.7289 15 1 6.1884 -1.2975 -9.9092 16 6 8.0697 -2.3347 -9.3754 17 6 8.3438 -2.4437 -10.8874 18 1 9.1487 -3.1345 -11.1380 19 8 8.4741 -1.1781 -11.5382 20 6 6.9407 -3.0603 -11.0148 21 6 3.1928 -0.6880 -3.2656 22 6 2.7263 -0.0374 -2.1397 23 1 -0.3934 0.4417 0.7650 24 1 1.7923 -0.5138 0.8900 25 1 1.5615 2.4679 -1.2085 26 1 1.5878 2.4586 1.2242 27 1 0.9759 -2.5578 -0.7361 28 1 1.7942 -3.7216 -2.7448 29 1 5.0156 -1.5555 -4.9719 30 1 3.5628 -1.0408 -5.8621 31 1 5.6049 -1.3435 -7.5936 32 1 4.8065 -3.4539 -9.2918 33 1 6.2598 -3.9692 -8.4027 34 1 8.4343 -1.4084 -8.9311 35 1 8.3654 -3.2195 -8.8118 36 1 9.3543 -0.7853 -11.4616 37 1 6.9281 -4.1442 -10.9007 38 1 6.3927 -2.7208 -11.8938 39 1 3.8174 -0.1632 -3.9733 40 1 2.9868 0.9964 -1.9673 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_2989410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:38 Heat of formation + Delta-G solvation = -96.869684 kcal Electronic energy + Delta-G solvation = -22452.547363 eV Core-core repulsion = 18814.327583 eV Total energy + Delta-G solvation = -3638.219780 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57451 -40.84005 -40.10122 -38.93144 -37.33589 -36.50654 -34.98409 -32.49003 -31.82947 -30.51254 -28.08737 -26.68750 -26.14036 -24.14533 -23.42682 -22.27336 -21.72727 -20.52410 -19.47729 -18.67260 -18.48465 -17.82848 -17.49689 -17.34605 -16.79753 -16.70901 -16.36457 -15.88353 -15.71621 -15.56627 -15.32590 -14.93956 -14.48129 -14.42873 -14.09725 -14.00162 -13.85889 -13.52723 -13.41822 -13.35574 -12.95230 -12.49043 -12.21794 -12.14306 -11.91226 -11.84268 -11.75071 -11.18423 -11.07791 -10.62678 -10.47926 -10.21772 -10.04205 -9.22169 -4.91567 0.26379 0.30578 1.32731 1.41996 1.47702 1.62325 1.97024 2.58247 2.61993 3.17086 3.40267 3.46177 3.61180 3.64277 3.75315 3.80363 3.82894 3.96795 3.98117 4.03732 4.08077 4.26701 4.29393 4.41577 4.44864 4.50400 4.63711 4.68293 4.77425 4.83035 4.87875 4.96415 5.05524 5.14947 5.15959 5.24154 5.27480 5.44829 5.50003 5.68206 6.24750 6.44317 6.60502 6.87938 7.09307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.124 4.124 5 C -0.062 4.062 6 C -0.167 4.167 7 C 0.120 3.880 8 O -0.320 6.320 9 C 0.036 3.964 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.707 5.707 13 C 0.131 3.869 14 C -0.108 4.108 15 H 0.102 0.898 16 C -0.158 4.158 17 C 0.073 3.927 18 H 0.080 0.920 19 O -0.572 6.572 20 C -0.133 4.133 21 C -0.199 4.199 22 C -0.078 4.078 23 H 0.394 0.606 24 H 0.093 0.907 25 H -0.296 1.296 26 H -0.290 1.290 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.421 0.579 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.167 0.833 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 5.506 0.955 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.194 4.194 3 Si 0.674 3.326 4 C -0.125 4.125 5 C -0.080 4.080 6 C -0.185 4.185 7 C 0.075 3.925 8 O -0.233 6.233 9 C -0.041 4.041 10 C 0.297 3.703 11 O -0.454 6.454 12 N -0.362 5.362 13 C 0.007 3.993 14 C -0.127 4.127 15 H 0.120 0.880 16 C -0.196 4.196 17 C 0.014 3.986 18 H 0.098 0.902 19 O -0.381 6.381 20 C -0.171 4.171 21 C -0.218 4.218 22 C -0.095 4.095 23 H 0.244 0.756 24 H 0.110 0.890 25 H -0.223 1.223 26 H -0.217 1.217 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.258 0.742 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.249 0.751 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.184 0.816 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.382 4.881 0.150 8.036 hybrid contribution -0.735 0.154 0.547 0.929 sum 5.647 5.036 0.696 7.598 Atomic orbital electron populations 1.86549 1.18832 1.80702 1.50990 1.25039 0.83855 1.12067 0.98413 0.94224 0.90155 0.71788 0.76412 1.19462 1.01035 0.94571 0.97390 1.20918 0.96894 0.94143 0.96005 1.20626 1.01512 1.01386 0.95022 1.19198 0.94770 0.92001 0.86557 1.86125 1.65150 1.40292 1.31720 1.22749 0.97796 0.94142 0.89430 1.20577 0.78252 0.87557 0.83941 1.90763 1.55720 1.20348 1.78615 1.45690 1.51406 1.16949 1.22127 1.21405 0.98368 0.93519 0.85971 1.22657 0.95085 0.99939 0.94996 0.87979 1.23744 0.95096 1.03751 0.96993 1.22779 0.97855 0.85687 0.92257 0.90248 1.86421 1.39072 1.35250 1.77341 1.23112 0.95698 1.00702 0.97553 1.21486 1.05870 0.93311 1.01102 1.21022 0.95921 0.99938 0.92629 0.75585 0.88964 1.22324 1.21706 0.84750 0.85368 0.85204 0.85886 0.74184 0.92492 0.91673 0.89879 0.88650 0.75142 0.87643 0.91254 0.81582 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.61 12.74 -148.98 -1.90 -3.51 16 2 C -0.09 0.03 2.81 71.24 0.20 0.23 16 3 Si 0.77 -2.23 29.78 68.60 2.04 -0.19 16 4 C -0.12 -0.35 5.42 -19.85 -0.11 -0.46 16 5 C -0.06 -0.30 9.60 22.25 0.21 -0.09 16 6 C -0.17 -1.10 9.99 22.36 0.22 -0.88 16 7 C 0.12 0.60 6.69 22.51 0.15 0.75 16 8 O -0.32 -2.28 9.67 -73.43 -0.71 -2.99 16 9 C 0.04 -0.09 5.22 71.24 0.37 0.29 16 10 C 0.51 1.88 7.91 87.66 0.69 2.57 16 11 O -0.58 -9.01 16.50 16.00 0.26 -8.74 16 12 N -0.71 2.38 5.56 -463.06 -2.57 -0.19 16 13 C 0.13 -0.18 5.51 86.37 0.48 0.30 16 14 C -0.11 0.50 3.69 -10.27 -0.04 0.46 16 15 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 16 C -0.16 1.02 7.47 31.21 0.23 1.25 16 17 C 0.07 -0.31 5.29 31.21 0.17 -0.14 16 18 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 19 O -0.57 1.12 13.59 -148.98 -2.02 -0.91 16 20 C -0.13 0.41 7.46 31.12 0.23 0.64 16 21 C -0.20 0.16 9.04 22.37 0.20 0.36 16 22 C -0.08 0.02 8.66 22.25 0.19 0.22 16 23 H 0.39 -2.05 8.74 -74.06 -0.65 -2.70 16 24 H 0.09 -0.37 7.96 -2.39 -0.02 -0.39 16 25 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 26 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 27 H 0.13 0.45 8.06 -2.91 -0.02 0.42 16 28 H 0.13 0.86 8.06 -2.91 -0.02 0.83 16 29 H 0.13 -1.24 7.65 -2.39 -0.02 -1.26 16 30 H 0.12 -1.02 7.67 -2.38 -0.02 -1.04 16 31 H 0.42 -4.48 8.47 -92.71 -0.79 -5.26 16 32 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.06 0.03 7.84 -2.39 -0.02 0.01 16 34 H 0.08 -0.64 8.14 -2.38 -0.02 -0.66 16 35 H 0.10 -0.65 7.89 -2.39 -0.02 -0.67 16 36 H 0.40 -3.98 9.12 -74.06 -0.68 -4.66 16 37 H 0.11 -0.50 8.10 -2.39 -0.02 -0.51 16 38 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.17 -1.43 6.30 -2.91 -0.02 -1.45 16 40 H 0.15 -0.82 4.87 -2.91 -0.01 -0.83 16 Total: 0.00 -27.65 338.28 -2.67 -30.32 By element: Atomic # 1 Polarization: -18.30 SS G_CDS: -0.98 Total: -19.29 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 3.21 Total: 5.49 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -2.57 Total: -0.19 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -4.37 Total: -16.15 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: 2.04 Total: -0.19 kcal Total: -27.65 -2.67 -30.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_2989410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.548 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds