Wall clock time and date at job start Tue Mar 9 2021 13:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47185 * 119.99778 * 2 1 3 5 5 C 1.38274 * 119.94301 * 65.00307 * 4 2 1 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 2 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35897 * 120.05494 * 180.25974 * 7 6 5 9 9 C 1.42901 * 117.00083 * 0.31613 * 8 7 6 10 10 C 1.53000 * 109.47055 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47300 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99936 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00255 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00026 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47072 * 180.02562 * 14 13 11 16 16 H 1.08998 * 112.84956 * 316.19944 * 15 14 13 17 17 C 1.53781 * 113.61434 * 87.50037 * 15 14 13 18 18 C 1.53780 * 87.08039 * 139.97952 * 17 15 14 19 19 H 1.08995 * 113.61678 * 220.02012 * 18 17 15 20 20 O 1.42901 * 113.61286 * 89.11662 * 18 17 15 21 21 C 1.53773 * 87.08089 * 334.57016 * 18 17 15 22 22 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 23 23 C 1.38149 * 119.94512 * 359.70901 * 22 7 6 24 24 H 0.96702 * 114.00258 * 300.00375 * 1 2 3 25 25 H 1.08998 * 109.47382 * 240.00321 * 2 1 3 26 26 H 1.48500 * 109.99835 * 300.00120 * 3 2 1 27 27 H 1.48503 * 109.99893 * 61.31761 * 3 2 1 28 28 H 1.08002 * 119.96836 * 359.97438 * 5 4 2 29 29 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 30 30 H 1.09001 * 109.46722 * 299.99905 * 9 8 7 31 31 H 1.08994 * 109.47228 * 60.00588 * 9 8 7 32 32 H 1.08999 * 109.47401 * 300.00079 * 10 9 8 33 33 H 1.09000 * 109.47100 * 59.99678 * 10 9 8 34 34 H 0.97003 * 120.00017 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.46686 * 299.99897 * 14 13 11 36 36 H 1.08994 * 109.46785 * 60.00304 * 14 13 11 37 37 H 1.08996 * 113.62005 * 254.53165 * 17 15 14 38 38 H 1.09005 * 113.61584 * 25.43354 * 17 15 14 39 39 H 0.96706 * 114.00068 * 82.50235 * 20 18 17 40 40 H 1.09003 * 113.61687 * 270.88097 * 21 18 17 41 41 H 1.09007 * 113.69661 * 139.99105 * 21 18 17 42 42 H 1.07997 * 120.02650 * 179.67529 * 22 7 6 43 43 H 1.07997 * 119.96847 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6841 -2.0605 1.3972 6 6 2.1385 -2.7127 2.5270 7 6 2.8535 -2.0145 3.4893 8 8 3.3061 -2.6550 4.5990 9 6 3.0155 -4.0500 4.7069 10 6 3.6000 -4.5933 6.0123 11 6 3.2929 -6.0643 6.1263 12 8 2.6686 -6.6232 5.2496 13 7 3.7131 -6.7590 7.2021 14 6 3.4151 -8.1891 7.3127 15 6 3.9994 -8.7324 8.6182 16 1 5.0098 -8.3723 8.8118 17 6 3.0526 -8.5930 9.8219 18 6 3.5248 -9.9910 10.2550 19 1 2.7253 -10.6201 10.6464 20 8 4.6789 -9.9699 11.0974 21 6 3.8473 -10.2546 8.7748 22 6 3.1000 -0.6598 3.3198 23 6 2.6383 -0.0109 2.1909 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 1.5615 2.4679 -1.2085 27 1 1.5879 2.4586 1.2242 28 1 1.1309 -2.6045 0.6459 29 1 1.9410 -3.7663 2.6591 30 1 1.9355 -4.1974 4.7036 31 1 3.4571 -4.5795 3.8627 32 1 4.6799 -4.4459 6.0160 33 1 3.1581 -4.0638 6.8563 34 1 4.2128 -6.3120 7.9032 35 1 2.3350 -8.3364 7.3094 36 1 3.8566 -8.7185 6.4685 37 1 3.3397 -7.8014 10.5139 38 1 1.9987 -8.5541 9.5463 39 1 4.4825 -9.8045 12.0297 40 1 3.0107 -10.6699 8.2128 41 1 4.7757 -10.8044 8.6199 42 1 3.6518 -0.1129 4.0699 43 1 2.8297 1.0438 2.0588 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4549602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:41 Heat of formation + Delta-G solvation = -106.233197 kcal Electronic energy + Delta-G solvation = -23991.321839 eV Core-core repulsion = 20197.158407 eV Total energy + Delta-G solvation = -3794.163432 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43313 -40.98859 -40.18032 -39.19221 -37.32326 -36.53353 -34.95776 -33.38380 -32.10991 -31.49317 -29.04397 -26.72653 -26.50950 -25.49494 -23.81232 -23.16796 -22.19720 -21.56586 -20.50341 -19.54374 -18.46013 -18.15491 -17.72316 -17.54793 -17.30889 -16.87049 -16.52621 -16.38236 -16.15703 -16.03642 -15.63290 -15.44085 -14.86993 -14.66720 -14.63872 -14.58537 -14.21184 -13.99305 -13.76805 -13.45692 -13.37211 -13.02496 -12.87017 -12.84117 -12.22615 -12.18106 -12.10431 -11.86035 -11.81236 -11.56744 -11.20558 -11.12996 -10.64391 -10.58831 -10.17347 -10.06060 -9.23579 -4.90592 0.24547 0.31645 1.32987 1.49711 1.60630 1.69486 1.96873 2.47779 2.63615 3.15279 3.43957 3.50858 3.58113 3.60080 3.72606 3.73967 3.82324 3.86784 3.87747 3.96027 4.02707 4.22716 4.26327 4.32630 4.40833 4.49463 4.59271 4.61182 4.62281 4.68012 4.75251 4.75851 4.82511 4.85869 4.98408 5.03830 5.15608 5.18080 5.29407 5.30723 5.45191 5.47307 5.68525 6.29895 6.43137 6.49213 6.85804 7.12219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.081 4.081 3 Si 0.771 3.229 4 C -0.158 4.158 5 C -0.063 4.063 6 C -0.216 4.216 7 C 0.122 3.878 8 O -0.319 6.319 9 C 0.074 3.926 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.587 6.587 13 N -0.714 5.714 14 C 0.130 3.870 15 C -0.110 4.110 16 H 0.100 0.900 17 C -0.160 4.160 18 C 0.073 3.927 19 H 0.080 0.920 20 O -0.572 6.572 21 C -0.132 4.132 22 C -0.151 4.151 23 C -0.078 4.078 24 H 0.385 0.615 25 H 0.121 0.879 26 H -0.305 1.305 27 H -0.278 1.278 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.418 0.582 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.398 0.602 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.151 0.849 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 0.621 6.125 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.190 4.190 3 Si 0.676 3.324 4 C -0.159 4.159 5 C -0.081 4.081 6 C -0.234 4.234 7 C 0.077 3.923 8 O -0.233 6.233 9 C -0.002 4.002 10 C -0.171 4.171 11 C 0.304 3.696 12 O -0.468 6.468 13 N -0.366 5.366 14 C 0.006 3.994 15 C -0.128 4.128 16 H 0.118 0.882 17 C -0.197 4.197 18 C 0.014 3.986 19 H 0.097 0.903 20 O -0.381 6.381 21 C -0.170 4.170 22 C -0.169 4.169 23 C -0.096 4.096 24 H 0.235 0.765 25 H 0.139 0.861 26 H -0.233 1.233 27 H -0.205 1.205 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.255 0.745 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.169 0.831 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.992 0.664 4.596 5.524 hybrid contribution -1.425 -0.391 1.048 1.811 sum 1.567 0.273 5.644 5.864 Atomic orbital electron populations 1.86567 1.18801 1.80437 1.50147 1.25221 0.83244 1.12080 0.98450 0.94034 0.90226 0.71735 0.76394 1.20261 1.02731 0.94775 0.98103 1.20942 0.96643 0.94096 0.96427 1.21462 1.04280 1.01231 0.96473 1.19218 0.94156 0.92703 0.86246 1.85950 1.74096 1.23974 1.39252 1.22421 1.00638 0.78458 0.98643 1.21430 1.05799 0.90868 0.98987 1.20688 0.78124 0.89485 0.81300 1.90741 1.42259 1.72464 1.41328 1.45877 1.57334 1.10426 1.22988 1.21381 1.00164 0.80230 0.97618 1.22661 1.00266 0.96572 0.93315 0.88217 1.23703 0.99887 0.98402 0.97728 1.22736 0.87921 0.96624 0.91309 0.90251 1.86422 1.32974 1.94891 1.23802 1.23105 1.03336 0.95639 0.94872 1.20638 1.04691 0.91407 1.00182 1.21074 0.95853 1.00307 0.92333 0.76544 0.86109 1.23304 1.20478 0.85336 0.85083 0.91969 0.91813 0.85374 0.85403 0.74499 0.91761 0.92387 0.90133 0.88659 0.75163 0.87560 0.91204 0.83112 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.28 12.83 -148.98 -1.91 -4.20 16 2 C -0.08 -0.06 2.80 71.23 0.20 0.14 16 3 Si 0.77 -1.23 29.88 68.60 2.05 0.82 16 4 C -0.16 -0.29 5.35 -19.85 -0.11 -0.40 16 5 C -0.06 -0.25 9.68 22.26 0.22 -0.04 16 6 C -0.22 -1.01 9.04 22.37 0.20 -0.81 16 7 C 0.12 0.53 6.69 22.51 0.15 0.68 16 8 O -0.32 -1.06 10.14 -92.39 -0.94 -2.00 16 9 C 0.07 0.11 4.03 71.98 0.29 0.40 16 10 C -0.13 0.52 6.07 29.85 0.18 0.70 16 11 C 0.52 0.72 7.83 87.66 0.69 1.40 16 12 O -0.59 -6.37 15.98 -3.04 -0.05 -6.42 16 13 N -0.71 2.45 5.56 -463.06 -2.57 -0.13 16 14 C 0.13 -0.22 5.51 86.38 0.48 0.26 16 15 C -0.11 0.46 3.69 -10.27 -0.04 0.43 16 16 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 17 C -0.16 0.92 7.46 31.12 0.23 1.15 16 18 C 0.07 -0.28 5.28 31.12 0.16 -0.11 16 19 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 20 O -0.57 0.84 13.59 -148.98 -2.02 -1.18 16 21 C -0.13 0.39 7.47 31.12 0.23 0.62 16 22 C -0.15 -0.22 9.99 22.37 0.22 0.00 16 23 C -0.08 0.00 8.66 22.25 0.19 0.20 16 24 H 0.39 -0.58 8.70 -74.06 -0.64 -1.23 16 25 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 26 H -0.30 -1.92 7.11 99.48 0.71 -1.22 16 27 H -0.28 -0.39 7.01 99.48 0.70 0.31 16 28 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 29 H 0.13 0.53 6.30 -2.91 -0.02 0.51 16 30 H 0.06 0.21 7.61 -2.39 -0.02 0.19 16 31 H 0.06 0.21 7.63 -2.39 -0.02 0.19 16 32 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H 0.42 -3.87 8.47 -92.71 -0.79 -4.65 16 35 H 0.06 0.00 7.84 -2.39 -0.02 -0.02 16 36 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.09 -0.60 7.90 -2.38 -0.02 -0.62 16 39 H 0.40 -3.76 9.12 -74.05 -0.68 -4.44 16 40 H 0.11 -0.52 8.10 -2.39 -0.02 -0.54 16 41 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 43 H 0.15 -0.70 4.83 -2.91 -0.01 -0.71 16 Total: 0.00 -21.04 359.20 -3.17 -24.21 By element: Atomic # 1 Polarization: -14.69 SS G_CDS: -1.03 Total: -15.72 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 3.30 Total: 4.62 kcal Atomic # 7 Polarization: 2.45 SS G_CDS: -2.57 Total: -0.13 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -4.92 Total: -13.80 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: 2.05 Total: 0.82 kcal Total: -21.04 -3.17 -24.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.024 kcal (2) G-P(sol) polarization free energy of solvation -21.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds