Wall clock time and date at job start Tue Mar 9 2021 13:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46807 * 2 1 4 4 C 1.50702 * 109.47117 * 119.99854 * 2 1 3 5 5 C 1.38237 * 119.97048 * 245.02261 * 4 2 1 6 6 C 1.38293 * 120.10846 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05615 * 359.67510 * 6 5 4 8 8 C 1.38758 * 119.94040 * 0.60281 * 7 6 5 9 9 O 1.35904 * 120.05373 * 179.69711 * 8 7 6 10 10 C 1.42902 * 116.99881 * 359.72231 * 9 8 7 11 11 C 1.53000 * 109.46828 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46931 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47151 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99714 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00142 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00040 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47049 * 180.02562 * 16 15 13 18 18 H 1.08999 * 112.84944 * 43.79906 * 17 16 15 19 19 C 1.53777 * 113.61288 * 175.00079 * 17 16 15 20 20 C 1.53781 * 87.08184 * 140.06125 * 19 17 16 21 21 H 1.08993 * 113.61848 * 219.93408 * 20 19 17 22 22 O 1.42905 * 113.61237 * 89.11276 * 20 19 17 23 23 C 1.53779 * 113.68766 * 272.53530 * 17 16 15 24 24 C 1.38164 * 119.97031 * 65.00708 * 4 2 1 25 25 H 0.96695 * 114.00067 * 59.99856 * 1 2 3 26 26 H 1.08999 * 109.47296 * 240.00525 * 2 1 3 27 27 H 1.48500 * 109.99839 * 60.00248 * 3 2 1 28 28 H 1.48501 * 109.99869 * 181.31845 * 3 2 1 29 29 H 1.07992 * 119.95103 * 359.97438 * 5 4 2 30 30 H 1.08004 * 119.97290 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.02998 * 180.31810 * 7 6 5 32 32 H 1.09000 * 109.47205 * 60.00281 * 10 9 8 33 33 H 1.08993 * 109.47753 * 300.00005 * 10 9 8 34 34 H 1.08994 * 109.47581 * 60.00529 * 11 10 9 35 35 H 1.09004 * 109.47239 * 299.99811 * 11 10 9 36 36 H 1.08992 * 109.47205 * 60.00128 * 12 11 10 37 37 H 1.09004 * 109.46648 * 299.99735 * 12 11 10 38 38 H 0.96998 * 120.00268 * 0.02562 * 15 13 12 39 39 H 1.08992 * 109.47034 * 60.00509 * 16 15 13 40 40 H 1.09004 * 109.47158 * 299.99909 * 16 15 13 41 41 H 1.09005 * 113.61435 * 25.51551 * 19 17 16 42 42 H 1.08996 * 113.69073 * 254.62041 * 19 17 16 43 43 H 0.96705 * 113.99788 * 180.02562 * 22 20 19 44 44 H 1.09003 * 113.61721 * 105.45755 * 23 17 16 45 45 H 1.09005 * 113.61708 * 334.55854 * 23 17 16 46 46 H 1.08005 * 120.02968 * 0.03790 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6383 -0.0115 2.1911 6 6 3.1010 -0.6607 3.3211 7 6 2.8520 -2.0080 3.4958 8 6 2.1476 -2.7129 2.5302 9 8 1.9066 -4.0400 2.6967 10 6 2.4129 -4.6469 3.8873 11 6 2.0455 -6.1321 3.8985 12 6 2.5871 -6.7818 5.1735 13 6 2.2258 -8.2448 5.1844 14 8 1.5966 -8.7208 4.2632 15 7 2.6017 -9.0241 6.2176 16 6 2.2500 -10.4463 6.2283 17 6 2.7917 -11.0960 7.5033 18 1 2.6227 -10.4887 8.3925 19 6 2.3717 -12.5656 7.6720 20 6 3.7954 -12.8313 8.1890 21 1 4.2205 -13.7703 7.8348 22 8 3.9336 -12.6570 9.6006 23 6 4.2364 -11.6060 7.3710 24 6 1.6846 -2.0595 1.3977 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5137 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7704 -0.0321 29 1 2.8302 1.0429 2.0586 30 1 3.6535 -0.1126 4.0701 31 1 3.2091 -2.5134 4.3808 32 1 1.9760 -4.1583 4.7582 33 1 3.4972 -4.5403 3.9167 34 1 2.4820 -6.6210 3.0277 35 1 0.9610 -6.2384 3.8694 36 1 2.1502 -6.2929 6.0442 37 1 3.6715 -6.6755 5.2030 38 1 3.1046 -8.6434 6.9545 39 1 2.6865 -10.9351 5.3574 40 1 1.1655 -10.5526 6.1993 41 1 2.1486 -13.0669 6.7301 42 1 1.5984 -12.7164 8.4253 43 1 4.8270 -12.8223 9.9317 44 1 4.9687 -10.9806 7.8817 45 1 4.5232 -11.8448 6.3469 46 1 1.1325 -2.6051 0.6466 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12857620_4549616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:46 Heat of formation + Delta-G solvation = -107.974367 kcal Electronic energy + Delta-G solvation = -25533.303075 eV Core-core repulsion = 21583.526521 eV Total energy + Delta-G solvation = -3949.776554 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27748 -41.02980 -40.20249 -39.06941 -37.31440 -36.58112 -34.92581 -34.90544 -32.56847 -31.31421 -29.65108 -27.76841 -26.86949 -26.69176 -24.01096 -23.66444 -23.02767 -21.75645 -21.51173 -20.59197 -18.92251 -18.42911 -18.38154 -17.90667 -17.52433 -17.39581 -17.06923 -16.93691 -16.64657 -16.23473 -15.84744 -15.74204 -15.30329 -15.00659 -14.85347 -14.53010 -14.30309 -14.18938 -14.03761 -13.84408 -13.56191 -13.48954 -13.30389 -13.24330 -12.98249 -12.57903 -12.43298 -12.24616 -12.17728 -12.02691 -11.98944 -11.70439 -11.64551 -11.32000 -10.98395 -10.71670 -10.35669 -10.09643 -9.87527 -9.20945 -4.95978 0.22986 0.42875 1.27421 1.64025 1.65458 1.89614 1.98949 2.34281 2.66403 2.95142 3.38791 3.41319 3.46680 3.56867 3.63883 3.76722 3.78907 3.81679 3.84516 3.91031 3.99586 4.10722 4.17352 4.19763 4.22946 4.26936 4.29896 4.35944 4.43180 4.53328 4.56366 4.61221 4.65755 4.70214 4.77191 4.90736 4.96490 4.99241 5.03851 5.14978 5.21064 5.28266 5.37261 5.42423 5.46671 5.70021 6.42481 6.43970 6.55552 6.63567 7.20540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.074 4.074 3 Si 0.688 3.312 4 C -0.036 4.036 5 C -0.163 4.163 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.134 3.866 9 O -0.310 6.310 10 C 0.059 3.941 11 C -0.105 4.105 12 C -0.138 4.138 13 C 0.512 3.488 14 O -0.536 6.536 15 N -0.731 5.731 16 C 0.127 3.873 17 C -0.118 4.118 18 H 0.100 0.900 19 C -0.125 4.125 20 C 0.077 3.923 21 H 0.070 0.930 22 O -0.552 6.552 23 C -0.168 4.168 24 C -0.122 4.122 25 H 0.383 0.617 26 H 0.076 0.924 27 H -0.250 1.250 28 H -0.255 1.255 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.383 0.617 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 0.743 1.296 4.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.184 4.184 3 Si 0.589 3.411 4 C -0.036 4.036 5 C -0.181 4.181 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.089 3.911 9 O -0.224 6.224 10 C -0.016 4.016 11 C -0.143 4.143 12 C -0.178 4.178 13 C 0.299 3.701 14 O -0.412 6.412 15 N -0.383 5.383 16 C 0.003 3.997 17 C -0.136 4.136 18 H 0.118 0.882 19 C -0.163 4.163 20 C 0.017 3.983 21 H 0.088 0.912 22 O -0.358 6.358 23 C -0.205 4.205 24 C -0.141 4.141 25 H 0.230 0.770 26 H 0.094 0.906 27 H -0.175 1.175 28 H -0.180 1.180 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.231 0.769 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.441 0.663 1.433 3.786 hybrid contribution 1.117 -0.460 0.905 1.510 sum 4.559 0.202 2.338 5.127 Atomic orbital electron populations 1.86505 1.17010 1.81853 1.49674 1.24736 0.85899 1.10525 0.97279 0.95356 0.80685 0.77870 0.87197 1.19118 0.96830 0.93014 0.94656 1.20798 1.02654 0.99145 0.95469 1.20858 0.97642 0.93816 0.96719 1.21297 1.04801 0.95768 1.00506 1.18993 0.94749 0.83003 0.94373 1.86086 1.74207 1.19762 1.42299 1.22838 0.98715 0.93842 0.86223 1.21230 1.03559 0.91718 0.97776 1.21528 1.03437 0.92544 1.00280 1.20573 0.79090 0.88592 0.81873 1.90755 1.39372 1.75497 1.35556 1.46011 1.58358 1.10205 1.23748 1.21421 1.00594 0.80162 0.97491 1.22749 0.96485 0.96571 0.97832 0.88170 1.23028 0.96472 0.95011 1.01767 1.22678 0.97657 0.96629 0.81286 0.91164 1.86466 1.35556 1.92866 1.20883 1.23753 0.96731 0.98687 1.01374 1.20253 1.02762 0.93598 0.97499 0.76951 0.90569 1.17531 1.17967 0.86294 0.85242 0.85076 0.91746 0.91761 0.89785 0.89751 0.88369 0.88412 0.76446 0.91178 0.91156 0.88314 0.90036 0.76924 0.90747 0.89062 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.62 12.81 -35.23 -0.45 -1.07 16 2 C -0.07 -0.06 2.79 36.01 0.10 0.04 16 3 Si 0.69 -0.38 29.85 -169.99 -5.07 -5.45 16 4 C -0.04 -0.12 5.38 -104.65 -0.56 -0.69 16 5 C -0.16 -0.51 8.67 -39.56 -0.34 -0.86 16 6 C -0.07 -0.15 10.04 -39.60 -0.40 -0.54 16 7 C -0.21 -0.41 9.04 -39.43 -0.36 -0.76 16 8 C 0.13 0.48 6.69 -39.22 -0.26 0.22 16 9 O -0.31 -1.05 10.14 -19.44 -0.20 -1.25 16 10 C 0.06 -0.01 4.74 37.16 0.18 0.17 16 11 C -0.10 -0.03 4.87 -26.73 -0.13 -0.16 16 12 C -0.14 0.28 5.70 -27.88 -0.16 0.12 16 13 C 0.51 0.60 7.83 -10.99 -0.09 0.51 16 14 O -0.54 -3.11 15.98 5.55 0.09 -3.02 16 15 N -0.73 0.80 5.56 -60.29 -0.33 0.46 16 16 C 0.13 -0.06 5.51 -4.04 -0.02 -0.08 16 17 C -0.12 0.20 3.68 -89.81 -0.33 -0.13 16 18 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 19 C -0.12 0.16 7.47 -25.92 -0.19 -0.03 16 20 C 0.08 -0.11 5.28 -25.92 -0.14 -0.25 16 21 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 22 O -0.55 0.20 13.59 -35.23 -0.48 -0.28 16 23 C -0.17 0.37 7.47 -25.92 -0.19 0.18 16 24 C -0.12 -0.49 9.62 -39.44 -0.38 -0.87 16 25 H 0.38 -1.58 8.74 45.56 0.40 -1.18 16 26 H 0.08 -0.06 7.96 -51.93 -0.41 -0.48 16 27 H -0.25 -0.64 7.05 56.52 0.40 -0.24 16 28 H -0.25 -0.47 7.11 56.52 0.40 -0.06 16 29 H 0.12 0.29 4.86 -52.49 -0.26 0.03 16 30 H 0.13 -0.05 8.06 -52.48 -0.42 -0.47 16 31 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 32 H 0.06 -0.09 7.65 -51.93 -0.40 -0.48 16 33 H 0.06 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.08 0.15 8.10 -51.93 -0.42 -0.27 16 35 H 0.08 0.16 8.10 -51.93 -0.42 -0.26 16 36 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 37 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.40 -1.49 8.47 -40.82 -0.35 -1.84 16 39 H 0.07 0.02 7.85 -51.93 -0.41 -0.39 16 40 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.10 -0.22 8.10 -51.93 -0.42 -0.64 16 42 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.38 -1.65 9.12 45.56 0.42 -1.24 16 44 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 45 H 0.09 -0.22 7.90 -51.93 -0.41 -0.63 16 46 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 LS Contribution 380.80 15.07 5.74 5.74 Total: 0.00 -10.80 380.80 -10.40 -21.19 By element: Atomic # 1 Polarization: -6.77 SS G_CDS: -6.41 Total: -13.18 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.28 Total: -3.14 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -0.33 Total: 0.46 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -1.04 Total: -5.62 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: -5.07 Total: -5.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -10.80 -10.40 -21.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.780 kcal (2) G-P(sol) polarization free energy of solvation -10.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds