Wall clock time and date at job start Tue Mar 9 2021 13:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.46807 * 2 1 4 4 C 1.50702 * 109.47117 * 119.99854 * 2 1 3 5 5 C 1.38237 * 119.97048 * 245.02261 * 4 2 1 6 6 C 1.38293 * 120.10846 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05615 * 359.67510 * 6 5 4 8 8 C 1.38758 * 119.94040 * 0.60281 * 7 6 5 9 9 O 1.35904 * 120.05373 * 179.69711 * 8 7 6 10 10 C 1.42902 * 116.99881 * 359.72231 * 9 8 7 11 11 C 1.53000 * 109.46828 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46931 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47151 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99714 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00142 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00040 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47049 * 180.02562 * 16 15 13 18 18 H 1.08999 * 112.84944 * 43.79906 * 17 16 15 19 19 C 1.53777 * 113.61288 * 175.00079 * 17 16 15 20 20 C 1.53781 * 87.08184 * 140.06125 * 19 17 16 21 21 H 1.08993 * 113.61848 * 219.93408 * 20 19 17 22 22 O 1.42905 * 113.61237 * 89.11276 * 20 19 17 23 23 C 1.53779 * 113.68766 * 272.53530 * 17 16 15 24 24 C 1.38164 * 119.97031 * 65.00708 * 4 2 1 25 25 H 0.96695 * 114.00067 * 59.99856 * 1 2 3 26 26 H 1.08999 * 109.47296 * 240.00525 * 2 1 3 27 27 H 1.48500 * 109.99839 * 60.00248 * 3 2 1 28 28 H 1.48501 * 109.99869 * 181.31845 * 3 2 1 29 29 H 1.07992 * 119.95103 * 359.97438 * 5 4 2 30 30 H 1.08004 * 119.97290 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.02998 * 180.31810 * 7 6 5 32 32 H 1.09000 * 109.47205 * 60.00281 * 10 9 8 33 33 H 1.08993 * 109.47753 * 300.00005 * 10 9 8 34 34 H 1.08994 * 109.47581 * 60.00529 * 11 10 9 35 35 H 1.09004 * 109.47239 * 299.99811 * 11 10 9 36 36 H 1.08992 * 109.47205 * 60.00128 * 12 11 10 37 37 H 1.09004 * 109.46648 * 299.99735 * 12 11 10 38 38 H 0.96998 * 120.00268 * 0.02562 * 15 13 12 39 39 H 1.08992 * 109.47034 * 60.00509 * 16 15 13 40 40 H 1.09004 * 109.47158 * 299.99909 * 16 15 13 41 41 H 1.09005 * 113.61435 * 25.51551 * 19 17 16 42 42 H 1.08996 * 113.69073 * 254.62041 * 19 17 16 43 43 H 0.96705 * 113.99788 * 180.02562 * 22 20 19 44 44 H 1.09003 * 113.61721 * 105.45755 * 23 17 16 45 45 H 1.09005 * 113.61708 * 334.55854 * 23 17 16 46 46 H 1.08005 * 120.02968 * 0.03790 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6383 -0.0115 2.1911 6 6 3.1010 -0.6607 3.3211 7 6 2.8520 -2.0080 3.4958 8 6 2.1476 -2.7129 2.5302 9 8 1.9066 -4.0400 2.6967 10 6 2.4129 -4.6469 3.8873 11 6 2.0455 -6.1321 3.8985 12 6 2.5871 -6.7818 5.1735 13 6 2.2258 -8.2448 5.1844 14 8 1.5966 -8.7208 4.2632 15 7 2.6017 -9.0241 6.2176 16 6 2.2500 -10.4463 6.2283 17 6 2.7917 -11.0960 7.5033 18 1 2.6227 -10.4887 8.3925 19 6 2.3717 -12.5656 7.6720 20 6 3.7954 -12.8313 8.1890 21 1 4.2205 -13.7703 7.8348 22 8 3.9336 -12.6570 9.6006 23 6 4.2364 -11.6060 7.3710 24 6 1.6846 -2.0595 1.3977 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5137 -0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7704 -0.0321 29 1 2.8302 1.0429 2.0586 30 1 3.6535 -0.1126 4.0701 31 1 3.2091 -2.5134 4.3808 32 1 1.9760 -4.1583 4.7582 33 1 3.4972 -4.5403 3.9167 34 1 2.4820 -6.6210 3.0277 35 1 0.9610 -6.2384 3.8694 36 1 2.1502 -6.2929 6.0442 37 1 3.6715 -6.6755 5.2030 38 1 3.1046 -8.6434 6.9545 39 1 2.6865 -10.9351 5.3574 40 1 1.1655 -10.5526 6.1993 41 1 2.1486 -13.0669 6.7301 42 1 1.5984 -12.7164 8.4253 43 1 4.8270 -12.8223 9.9317 44 1 4.9687 -10.9806 7.8817 45 1 4.5232 -11.8448 6.3469 46 1 1.1325 -2.6051 0.6466 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4549616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:46 Heat of formation + Delta-G solvation = -112.370237 kcal Electronic energy + Delta-G solvation = -25533.493694 eV Core-core repulsion = 21583.526521 eV Total energy + Delta-G solvation = -3949.967173 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39746 -41.05041 -40.18021 -39.17963 -37.36837 -36.55054 -34.97449 -34.88919 -32.68773 -31.44094 -29.66487 -27.74365 -26.78705 -26.69675 -23.98457 -23.80848 -23.03302 -21.84677 -21.51688 -20.50053 -19.01657 -18.43819 -18.37341 -17.86941 -17.55036 -17.51980 -17.07769 -17.05640 -16.66034 -16.18153 -15.90798 -15.70535 -15.34199 -15.02634 -14.87995 -14.63824 -14.40750 -14.26106 -14.09760 -13.84736 -13.55080 -13.43169 -13.28257 -13.23863 -12.94901 -12.65311 -12.45297 -12.28601 -12.17252 -12.12590 -11.86906 -11.78212 -11.66546 -11.20537 -11.05787 -10.64164 -10.39611 -10.14505 -10.00831 -9.38675 -4.93877 0.07654 0.24015 1.27275 1.57981 1.64981 1.87673 1.96817 2.33218 2.51517 3.13951 3.38409 3.49452 3.59096 3.63142 3.70993 3.74161 3.80335 3.83594 3.84386 3.95124 3.97839 4.10152 4.15219 4.24408 4.29759 4.31878 4.36849 4.40133 4.48813 4.59030 4.60382 4.64308 4.74162 4.82468 4.84506 4.85460 4.97363 5.02514 5.07359 5.14488 5.17075 5.21173 5.29880 5.31289 5.46665 5.58112 6.31980 6.49538 6.84929 6.87774 7.20660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.088 4.088 3 Si 0.787 3.213 4 C -0.053 4.053 5 C -0.183 4.183 6 C -0.074 4.074 7 C -0.205 4.205 8 C 0.123 3.877 9 O -0.333 6.333 10 C 0.056 3.944 11 C -0.101 4.101 12 C -0.127 4.127 13 C 0.506 3.494 14 O -0.592 6.592 15 N -0.717 5.717 16 C 0.129 3.871 17 C -0.109 4.109 18 H 0.100 0.900 19 C -0.133 4.133 20 C 0.074 3.926 21 H 0.080 0.920 22 O -0.572 6.572 23 C -0.159 4.159 24 C -0.147 4.147 25 H 0.404 0.596 26 H 0.091 0.909 27 H -0.294 1.294 28 H -0.286 1.286 29 H 0.121 0.879 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.398 0.602 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 1.443 2.436 6.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.197 4.197 3 Si 0.692 3.308 4 C -0.053 4.053 5 C -0.201 4.201 6 C -0.092 4.092 7 C -0.223 4.223 8 C 0.077 3.923 9 O -0.247 6.247 10 C -0.018 4.018 11 C -0.139 4.139 12 C -0.167 4.167 13 C 0.294 3.706 14 O -0.472 6.472 15 N -0.370 5.370 16 C 0.005 3.995 17 C -0.127 4.127 18 H 0.118 0.882 19 C -0.171 4.171 20 C 0.015 3.985 21 H 0.098 0.902 22 O -0.381 6.381 23 C -0.196 4.196 24 C -0.165 4.165 25 H 0.255 0.745 26 H 0.109 0.891 27 H -0.222 1.222 28 H -0.213 1.213 29 H 0.139 0.861 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.249 0.751 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.868 1.351 2.587 5.676 hybrid contribution 0.668 -0.731 0.605 1.160 sum 5.535 0.620 3.192 6.420 Atomic orbital electron populations 1.86450 1.17193 1.82522 1.51348 1.25011 0.85981 1.11823 0.96908 0.94301 0.77246 0.74684 0.84572 1.19500 0.96910 0.93105 0.95783 1.21021 1.03382 0.99462 0.96249 1.21227 0.97116 0.94096 0.96742 1.21590 1.04049 0.95774 1.00911 1.19189 0.95108 0.83238 0.94748 1.86062 1.74758 1.19882 1.44027 1.23036 1.00045 0.93058 0.85702 1.21149 1.01990 0.92377 0.98402 1.21532 1.05345 0.89918 0.99870 1.21200 0.78130 0.89977 0.81288 1.90736 1.42050 1.76710 1.37725 1.45933 1.57580 1.09833 1.23644 1.21341 0.99616 0.80658 0.97855 1.22655 0.97022 0.96153 0.96920 0.88224 1.23109 0.96591 0.95506 1.01849 1.22730 0.97314 0.97416 0.81048 0.90227 1.86423 1.37189 1.93017 1.21448 1.23693 0.96204 0.98253 1.01475 1.20382 1.03838 0.94169 0.98147 0.74494 0.89073 1.22161 1.21334 0.86147 0.82697 0.82278 0.89923 0.89623 0.91931 0.92171 0.85558 0.85341 0.74580 0.92043 0.92791 0.87664 0.91231 0.75146 0.90029 0.88731 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.57 12.81 -148.98 -1.91 -3.47 16 2 C -0.09 -0.20 2.79 71.24 0.20 0.00 16 3 Si 0.79 -0.71 29.85 68.60 2.05 1.34 16 4 C -0.05 -0.42 5.38 -19.88 -0.11 -0.53 16 5 C -0.18 -1.24 8.67 22.28 0.19 -1.05 16 6 C -0.07 -0.25 10.04 22.26 0.22 -0.03 16 7 C -0.20 -0.63 9.04 22.37 0.20 -0.43 16 8 C 0.12 0.95 6.69 22.51 0.15 1.10 16 9 O -0.33 -2.53 10.14 -92.47 -0.94 -3.47 16 10 C 0.06 -0.05 4.74 71.98 0.34 0.29 16 11 C -0.10 -0.11 4.87 30.60 0.15 0.04 16 12 C -0.13 0.68 5.70 29.85 0.17 0.85 16 13 C 0.51 1.31 7.83 87.66 0.69 1.99 16 14 O -0.59 -8.03 15.98 -3.05 -0.05 -8.08 16 15 N -0.72 1.81 5.56 -463.05 -2.57 -0.77 16 16 C 0.13 -0.04 5.51 86.38 0.48 0.44 16 17 C -0.11 0.37 3.68 -10.27 -0.04 0.33 16 18 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 19 C -0.13 0.28 7.47 31.12 0.23 0.52 16 20 C 0.07 -0.24 5.28 31.12 0.16 -0.08 16 21 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 22 O -0.57 0.66 13.59 -148.98 -2.02 -1.36 16 23 C -0.16 0.83 7.47 31.12 0.23 1.06 16 24 C -0.15 -1.40 9.62 22.36 0.22 -1.19 16 25 H 0.40 -3.38 8.74 -74.06 -0.65 -4.02 16 26 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 27 H -0.29 -1.79 7.05 99.48 0.70 -1.09 16 28 H -0.29 -1.16 7.11 99.48 0.71 -0.46 16 29 H 0.12 0.66 4.86 -2.91 -0.01 0.65 16 30 H 0.16 -0.39 8.06 -2.91 -0.02 -0.41 16 31 H 0.16 -0.56 6.30 -2.91 -0.02 -0.58 16 32 H 0.08 -0.38 7.65 -2.39 -0.02 -0.39 16 33 H 0.09 -0.44 7.67 -2.39 -0.02 -0.46 16 34 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 35 H 0.06 0.35 8.10 -2.38 -0.02 0.33 16 36 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 37 H 0.13 -1.42 8.14 -2.38 -0.02 -1.44 16 38 H 0.42 -3.73 8.47 -92.71 -0.79 -4.51 16 39 H 0.06 0.10 7.85 -2.39 -0.02 0.09 16 40 H 0.05 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.11 -0.40 8.10 -2.38 -0.02 -0.42 16 42 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.40 -3.69 9.12 -74.05 -0.68 -4.36 16 44 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.09 -0.53 7.90 -2.38 -0.02 -0.55 16 46 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 Total: 0.00 -28.24 380.80 -3.02 -31.26 By element: Atomic # 1 Polarization: -17.69 SS G_CDS: -1.07 Total: -18.76 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 3.49 Total: 3.32 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -2.57 Total: -0.77 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -4.92 Total: -16.39 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.05 Total: 1.34 kcal Total: -28.24 -3.02 -31.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.114 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds