Wall clock time and date at job start Tue Mar 9 2021 13:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.46833 * 2 1 4 4 C 1.50693 * 109.47248 * 240.00198 * 2 1 3 5 5 C 1.38239 * 119.97438 * 120.00137 * 4 2 1 6 6 C 1.38291 * 120.11193 * 180.02562 * 5 4 2 7 7 C 1.38117 * 120.05623 * 359.97438 * 6 5 4 8 8 C 1.38752 * 119.94579 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.05807 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99844 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.47327 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99684 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00461 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00237 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46998 * 180.02562 * 14 13 11 16 16 H 1.09003 * 112.85166 * 43.80692 * 15 14 13 17 17 C 1.53784 * 113.61135 * 175.00066 * 15 14 13 18 18 C 1.53781 * 87.07913 * 139.98262 * 17 15 14 19 19 H 1.09003 * 113.60746 * 220.02045 * 18 17 15 20 20 O 1.42893 * 113.61578 * 89.11827 * 18 17 15 21 21 C 1.53780 * 113.61185 * 272.49628 * 15 14 13 22 22 C 1.38170 * 119.97215 * 300.24773 * 4 2 1 23 23 H 0.96699 * 114.00241 * 60.00519 * 1 2 3 24 24 H 1.09001 * 109.46956 * 119.99804 * 2 1 3 25 25 H 1.48505 * 110.00148 * 298.67795 * 3 2 1 26 26 H 1.48503 * 110.00269 * 59.99788 * 3 2 1 27 27 H 1.07997 * 119.94611 * 359.97438 * 5 4 2 28 28 H 1.08005 * 119.97123 * 179.97438 * 6 5 4 29 29 H 1.08007 * 120.03253 * 180.02562 * 7 6 5 30 30 H 1.08996 * 109.47554 * 59.99244 * 10 9 8 31 31 H 1.09004 * 109.47340 * 299.99465 * 10 9 8 32 32 H 0.97010 * 119.99854 * 0.02562 * 13 11 10 33 33 H 1.08993 * 109.47452 * 60.00368 * 14 13 11 34 34 H 1.09000 * 109.47175 * 300.00158 * 14 13 11 35 35 H 1.09004 * 113.61147 * 254.52694 * 17 15 14 36 36 H 1.09000 * 113.61360 * 25.42691 * 17 15 14 37 37 H 0.96704 * 114.00141 * 180.02562 * 20 18 17 38 38 H 1.08996 * 113.61507 * 334.56463 * 21 15 14 39 39 H 1.08996 * 113.61313 * 105.47850 * 21 15 14 40 40 H 1.08001 * 120.02490 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7261 -0.0380 -2.1400 6 6 3.1882 -0.6869 -3.2704 7 6 2.8570 -2.0092 -3.4930 8 6 2.0603 -2.6866 -2.5811 9 8 1.7326 -3.9876 -2.7981 10 6 2.2436 -4.5958 -3.9859 11 6 1.7804 -6.0281 -4.0561 12 8 1.0818 -6.4834 -3.1754 13 7 2.1423 -6.8032 -5.0975 14 6 1.6915 -8.1954 -5.1660 15 6 2.2387 -8.8467 -6.4378 16 1 3.2863 -8.6063 -6.6194 17 6 1.9237 -10.3481 -6.5456 18 6 1.6617 -10.1055 -8.0414 19 1 0.8060 -10.6577 -8.4299 20 8 2.8278 -10.2412 -8.8561 21 6 1.3371 -8.6494 -7.6678 22 6 1.5930 -2.0317 -1.4511 23 1 -0.3933 0.4416 -0.7651 24 1 1.7923 -0.5138 0.8900 25 1 1.5878 2.4586 -1.2243 26 1 1.5613 2.4679 1.2085 27 1 2.9859 0.9961 -1.9680 28 1 3.8087 -0.1593 -3.9797 29 1 3.2185 -2.5157 -4.3757 30 1 3.3330 -4.5670 -3.9691 31 1 1.8793 -4.0527 -4.8579 32 1 2.7013 -6.4392 -5.8018 33 1 0.6021 -8.2242 -5.1826 34 1 2.0561 -8.7387 -4.2942 35 1 2.7833 -10.9896 -6.3513 36 1 1.0356 -10.6488 -5.9898 37 1 2.6694 -10.0894 -9.7979 38 1 0.2886 -8.4859 -7.4190 39 1 1.7232 -7.9197 -8.3796 40 1 0.9685 -2.5552 -0.7425 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:11 Heat of formation + Delta-G solvation = -97.943472 kcal Electronic energy + Delta-G solvation = -22541.787773 eV Core-core repulsion = 18903.521430 eV Total energy + Delta-G solvation = -3638.266343 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.60004 -40.87895 -40.14545 -38.99748 -37.37062 -36.52645 -35.00816 -32.49581 -31.81372 -30.21211 -27.99015 -26.78868 -26.69346 -23.69403 -23.66193 -22.54547 -21.67486 -20.53796 -19.36326 -18.72545 -18.04857 -17.71700 -17.52535 -17.32886 -17.01638 -16.65947 -16.37458 -16.23220 -15.88554 -15.58559 -15.32643 -14.95838 -14.70865 -14.43960 -14.16063 -13.99654 -13.87728 -13.46086 -13.37851 -13.01677 -12.95400 -12.61463 -12.20383 -12.12845 -12.03117 -11.86113 -11.61931 -11.20150 -11.10311 -10.69883 -10.64332 -10.24500 -9.93531 -9.29861 -4.91021 0.19747 0.38342 1.27276 1.38974 1.47878 1.61996 1.96762 2.56978 2.66010 3.15378 3.38646 3.43728 3.59015 3.63093 3.65536 3.73976 3.84609 3.95534 3.98668 4.04576 4.12326 4.24255 4.24726 4.36486 4.48399 4.54109 4.61609 4.63721 4.75535 4.80930 4.86067 4.97767 5.03547 5.13512 5.23713 5.25309 5.36424 5.42874 5.44127 5.68627 6.24957 6.42653 6.45597 6.86521 7.06668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.096 4.096 3 Si 0.787 3.213 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.324 6.324 10 C 0.039 3.961 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.707 5.707 14 C 0.131 3.869 15 C -0.108 4.108 16 H 0.103 0.897 17 C -0.133 4.133 18 C 0.074 3.926 19 H 0.079 0.921 20 O -0.572 6.572 21 C -0.159 4.159 22 C -0.151 4.151 23 H 0.386 0.614 24 H 0.119 0.881 25 H -0.276 1.276 26 H -0.305 1.305 27 H 0.150 0.850 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.421 0.579 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.398 0.602 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 2.121 -8.641 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.203 4.203 3 Si 0.691 3.309 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.238 6.238 10 C -0.039 4.039 11 C 0.296 3.704 12 O -0.455 6.455 13 N -0.361 5.361 14 C 0.007 3.993 15 C -0.126 4.126 16 H 0.121 0.879 17 C -0.170 4.170 18 C 0.015 3.985 19 H 0.097 0.903 20 O -0.380 6.380 21 C -0.197 4.197 22 C -0.170 4.170 23 H 0.235 0.765 24 H 0.137 0.863 25 H -0.202 1.202 26 H -0.234 1.234 27 H 0.167 0.833 28 H 0.181 0.819 29 H 0.178 0.822 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.258 0.742 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.249 0.751 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.943 2.019 -6.799 8.645 hybrid contribution -1.369 -0.295 -1.064 1.759 sum 3.574 1.723 -7.862 8.807 Atomic orbital electron populations 1.86579 1.18698 1.80568 1.50113 1.25489 0.83453 1.12928 0.98432 0.93877 0.89991 0.70604 0.76469 1.20137 0.97896 0.93155 0.97032 1.21222 0.99996 1.00960 0.95218 1.21340 0.97261 0.93429 0.96740 1.21638 1.02400 0.96921 1.01086 1.19207 0.95822 0.82848 0.95346 1.86124 1.71409 1.23423 1.42830 1.22715 1.01980 0.90458 0.88703 1.20602 0.79919 0.88176 0.81725 1.90766 1.39120 1.75577 1.40068 1.45687 1.53634 1.12378 1.24421 1.21410 0.99229 0.80464 0.98185 1.22668 1.00689 0.96003 0.93272 0.87859 1.23113 1.03200 0.95783 0.94944 1.22722 0.87985 0.96146 0.91680 0.90304 1.86419 1.34234 1.93654 1.23721 1.23705 1.00405 0.97932 0.97645 1.20297 1.03977 0.94977 0.97716 0.76458 0.86310 1.20213 1.23406 0.83273 0.81883 0.82191 0.85609 0.85683 0.74169 0.91811 0.92416 0.91128 0.87683 0.75139 0.88757 0.89875 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.22 12.76 -148.98 -1.90 -5.12 16 2 C -0.10 -0.18 2.82 71.23 0.20 0.02 16 3 Si 0.79 -1.44 29.79 68.60 2.04 0.61 16 4 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 5 C -0.16 0.33 8.67 22.28 0.19 0.52 16 6 C -0.07 0.30 10.04 22.25 0.22 0.52 16 7 C -0.20 0.49 9.04 22.36 0.20 0.69 16 8 C 0.11 0.55 6.69 22.51 0.15 0.70 16 9 O -0.32 -2.56 9.67 -73.45 -0.71 -3.27 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 11 C 0.51 2.13 7.91 87.66 0.69 2.82 16 12 O -0.58 -9.46 16.50 16.00 0.26 -9.19 16 13 N -0.71 2.17 5.56 -463.06 -2.57 -0.40 16 14 C 0.13 -0.14 5.51 86.38 0.48 0.33 16 15 C -0.11 0.49 3.69 -10.26 -0.04 0.45 16 16 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 17 C -0.13 0.39 7.47 31.12 0.23 0.63 16 18 C 0.07 -0.30 5.28 31.12 0.16 -0.14 16 19 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 20 O -0.57 1.13 13.59 -148.98 -2.02 -0.90 16 21 C -0.16 0.98 7.46 31.12 0.23 1.22 16 22 C -0.15 -1.07 9.55 22.37 0.21 -0.86 16 23 H 0.39 -0.13 8.70 -74.06 -0.64 -0.78 16 24 H 0.12 0.17 7.96 -2.39 -0.02 0.15 16 25 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 26 H -0.31 -1.91 7.11 99.48 0.71 -1.20 16 27 H 0.15 -1.00 4.87 -2.91 -0.01 -1.01 16 28 H 0.16 -1.73 8.06 -2.91 -0.02 -1.75 16 29 H 0.16 -1.50 6.30 -2.91 -0.02 -1.52 16 30 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 31 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 32 H 0.42 -4.41 8.47 -92.70 -0.79 -5.20 16 33 H 0.06 0.07 7.84 -2.39 -0.02 0.05 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.10 -0.47 8.10 -2.39 -0.02 -0.49 16 37 H 0.40 -3.98 9.12 -74.05 -0.68 -4.65 16 38 H 0.09 -0.60 7.90 -2.39 -0.02 -0.62 16 39 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.11 1.19 8.06 -2.91 -0.02 1.17 16 Total: 0.00 -27.86 338.22 -2.67 -30.54 By element: Atomic # 1 Polarization: -18.16 SS G_CDS: -0.98 Total: -19.14 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 3.21 Total: 6.88 kcal Atomic # 7 Polarization: 2.17 SS G_CDS: -2.57 Total: -0.40 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -4.37 Total: -18.48 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: 2.04 Total: 0.61 kcal Total: -27.86 -2.67 -30.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.408 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds