Wall clock time and date at job start Tue Mar 9 2021 13:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38237 * 119.94208 * 300.00368 * 4 2 1 6 6 C 1.38193 * 120.07646 * 179.97438 * 5 4 2 7 7 C 1.38665 * 119.95605 * 0.02562 * 6 5 4 8 8 O 1.35928 * 120.05918 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99439 * 359.97438 * 8 7 6 10 10 C 1.53005 * 109.46613 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46963 * 179.97438 * 10 9 8 12 12 C 1.34818 * 126.59119 * 124.71361 * 11 10 9 13 13 C 1.36594 * 106.83642 * 179.90929 * 12 11 10 14 14 C 1.47524 * 125.77155 * 180.13543 * 13 12 11 15 15 O 1.21590 * 120.00156 * 0.23808 * 14 13 12 16 16 N 1.34779 * 120.00424 * 180.23861 * 14 13 12 17 17 C 1.46496 * 120.00427 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47051 * 179.97438 * 17 16 14 19 19 H 1.08990 * 112.85001 * 316.19733 * 18 17 16 20 20 C 1.53779 * 113.61282 * 87.50587 * 18 17 16 21 21 C 1.53782 * 87.08234 * 139.97795 * 20 18 17 22 22 H 1.09002 * 113.61302 * 220.02180 * 21 20 18 23 23 O 1.42891 * 113.68973 * 89.12662 * 21 20 18 24 24 C 1.53784 * 113.61072 * 185.00191 * 18 17 16 25 25 N 1.34408 * 108.45940 * 0.35675 * 13 12 11 26 26 N 1.28760 * 109.52119 * 359.78021 * 25 13 12 27 27 C 1.38853 * 119.88532 * 359.97438 * 7 6 5 28 28 Cl 1.73599 * 120.04224 * 180.02562 * 27 7 6 29 29 C 1.38221 * 119.91936 * 359.71097 * 27 7 6 30 30 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 31 31 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 32 32 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 33 33 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 34 34 H 1.07999 * 119.96012 * 0.02562 * 5 4 2 35 35 H 1.07997 * 120.01876 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47486 * 299.99493 * 9 8 7 37 37 H 1.08994 * 109.47492 * 60.00495 * 9 8 7 38 38 H 1.09000 * 109.47323 * 300.00019 * 10 9 8 39 39 H 1.09004 * 109.47090 * 59.99914 * 10 9 8 40 40 H 1.07995 * 126.58189 * 0.03365 * 12 11 10 41 41 H 0.97008 * 119.99641 * 359.97438 * 16 14 13 42 42 H 1.08994 * 109.47125 * 300.00313 * 17 16 14 43 43 H 1.09000 * 109.46761 * 60.00269 * 17 16 14 44 44 H 1.08993 * 113.61630 * 254.52989 * 20 18 17 45 45 H 1.09005 * 113.61318 * 25.42731 * 20 18 17 46 46 H 0.96700 * 114.00082 * 82.46441 * 23 21 20 47 47 H 1.09005 * 113.61153 * 334.56591 * 24 18 17 48 48 H 1.08996 * 113.61818 * 105.39002 * 24 18 17 49 49 H 1.07996 * 119.97928 * 180.28938 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 1.5968 -2.0340 -1.4477 6 6 2.0556 -2.6881 -2.5753 7 6 2.8531 -2.0162 -3.4892 8 8 3.3059 -2.6577 -4.5988 9 6 2.9220 -4.0247 -4.7597 10 6 3.5223 -4.5738 -6.0555 11 7 3.1292 -5.9754 -6.2203 12 6 2.5020 -6.5143 -7.2851 13 6 2.3345 -7.8428 -7.0150 14 6 1.6938 -8.8296 -7.9050 15 8 1.2634 -8.4825 -8.9879 16 7 1.5855 -10.1160 -7.5178 17 6 0.9489 -11.0959 -8.4013 18 6 0.9560 -12.4699 -7.7282 19 1 1.9096 -12.7048 -7.2557 20 6 -0.2608 -12.7177 -6.8211 21 6 -0.2806 -14.1531 -7.3726 22 1 -1.2840 -14.5331 -7.5650 23 8 0.5248 -15.0666 -6.6251 24 6 0.4184 -13.5978 -8.6248 25 7 2.8476 -8.0979 -5.7992 26 7 3.3276 -7.0130 -5.2985 27 6 3.1882 -0.6868 -3.2691 28 17 4.1857 0.1586 -4.4110 29 6 2.7212 -0.0354 -2.1430 30 1 -0.3934 0.4417 0.7649 31 1 1.7923 -0.5138 0.8901 32 1 3.5346 1.7703 0.0322 33 1 1.5616 2.4678 -1.2086 34 1 0.9754 -2.5571 -0.7360 35 1 1.7933 -3.7220 -2.7444 36 1 3.2887 -4.6071 -3.9146 37 1 1.8352 -4.0940 -4.8045 38 1 3.1560 -3.9915 -6.9010 39 1 4.6092 -4.5045 -6.0104 40 1 2.1933 -5.9957 -8.1807 41 1 1.9292 -10.3931 -6.6539 42 1 -0.0793 -10.7929 -8.5987 43 1 1.4988 -11.1491 -9.3409 44 1 -0.0308 -12.6619 -5.7571 45 1 -1.1376 -12.1318 -7.0969 46 1 0.0906 -15.4193 -5.8363 47 1 -0.2728 -13.2524 -9.3936 48 1 1.1968 -14.2516 -9.0181 49 1 2.9774 0.9999 -1.9732 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_7143556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:40 Heat of formation + Delta-G solvation = -1.056335 kcal Electronic energy + Delta-G solvation = -34152.801369 eV Core-core repulsion = 29111.367563 eV Total energy + Delta-G solvation = -5041.433806 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.40623 -41.63180 -40.89856 -39.99983 -39.48340 -37.86819 -37.19893 -36.53475 -36.20417 -34.91398 -32.62952 -32.34502 -32.10491 -30.83909 -28.90915 -26.76332 -26.68786 -25.82532 -24.90660 -24.13084 -23.22570 -22.89786 -22.42415 -21.58690 -20.56426 -19.90445 -19.14880 -18.43217 -18.00441 -17.90368 -17.53749 -17.42991 -17.25423 -17.08047 -17.03112 -16.47790 -16.32037 -16.00805 -15.75616 -15.61690 -15.58898 -15.19728 -15.15211 -14.88790 -14.73749 -14.38320 -14.20267 -14.01762 -13.89702 -13.82931 -13.53405 -13.35288 -13.24409 -12.95114 -12.75657 -12.63630 -12.49763 -12.42937 -12.19131 -12.17920 -12.07758 -11.86050 -11.85158 -11.54545 -11.38267 -11.16615 -10.64694 -10.56326 -10.36201 -10.21932 -10.11515 -9.44231 -4.99762 -0.18717 -0.10054 -0.03023 0.48934 0.65751 0.89638 1.26232 1.59732 1.85331 1.93514 2.03183 2.13067 2.22979 3.05151 3.12602 3.17546 3.24667 3.39810 3.53936 3.56034 3.61399 3.64862 3.70470 3.74355 3.76908 3.83777 3.91041 3.93241 3.96794 3.99717 4.13809 4.28003 4.28178 4.36516 4.39052 4.50257 4.54804 4.62038 4.64291 4.67218 4.77864 4.83667 4.88212 4.88245 5.05781 5.14673 5.16187 5.18450 5.28838 5.29822 5.44872 5.88804 6.30514 6.75009 6.87117 6.89178 7.02932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.067 4.067 3 Si 0.759 3.241 4 C -0.111 4.111 5 C -0.044 4.044 6 C -0.189 4.189 7 C 0.139 3.861 8 O -0.304 6.304 9 C 0.045 3.955 10 C 0.124 3.876 11 N -0.351 5.351 12 C 0.119 3.881 13 C -0.123 4.123 14 C 0.604 3.396 15 O -0.568 6.568 16 N -0.707 5.707 17 C 0.131 3.869 18 C -0.113 4.113 19 H 0.093 0.907 20 C -0.162 4.162 21 C 0.074 3.926 22 H 0.083 0.917 23 O -0.573 6.573 24 C -0.127 4.127 25 N -0.216 5.216 26 N -0.082 5.082 27 C -0.078 4.078 28 Cl -0.058 7.058 29 C -0.095 4.095 30 H 0.406 0.594 31 H 0.105 0.895 32 H -0.287 1.287 33 H -0.298 1.298 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.238 0.762 41 H 0.414 0.586 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.397 0.603 47 H 0.112 0.888 48 H 0.070 0.930 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 0.712 5.437 6.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.177 4.177 3 Si 0.666 3.334 4 C -0.112 4.112 5 C -0.062 4.062 6 C -0.208 4.208 7 C 0.092 3.908 8 O -0.216 6.216 9 C -0.030 4.030 10 C 0.004 3.996 11 N -0.136 5.136 12 C -0.038 4.038 13 C -0.263 4.263 14 C 0.389 3.611 15 O -0.447 6.447 16 N -0.357 5.357 17 C 0.008 3.992 18 C -0.132 4.132 19 H 0.111 0.889 20 C -0.199 4.199 21 C 0.015 3.985 22 H 0.101 0.899 23 O -0.382 6.382 24 C -0.165 4.165 25 N -0.090 5.090 26 N -0.063 5.063 27 C -0.105 4.105 28 Cl -0.029 7.029 29 C -0.113 4.113 30 H 0.257 0.743 31 H 0.122 0.878 32 H -0.215 1.215 33 H -0.226 1.226 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.254 0.746 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.248 0.752 47 H 0.130 0.870 48 H 0.088 0.912 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.379 1.166 4.363 5.105 hybrid contribution -0.194 -0.252 -0.431 0.536 sum -2.574 0.914 3.933 4.788 Atomic orbital electron populations 1.86425 1.16809 1.82354 1.51615 1.24586 0.86126 1.10111 0.96891 0.94469 0.77627 0.76258 0.85068 1.19562 0.99596 0.95230 0.96782 1.21194 0.95590 0.93042 0.96343 1.21562 1.01406 1.02154 0.95659 1.18601 0.94573 0.90107 0.87489 1.85995 1.70557 1.25778 1.39284 1.23011 1.01076 0.80006 0.98956 1.21910 1.03782 0.73808 1.00130 1.50338 1.39693 1.10506 1.13075 1.23917 0.92227 0.93542 0.94102 1.21483 1.13867 0.95039 0.95879 1.16876 0.77921 0.81979 0.84341 1.90817 1.50814 1.80110 1.22919 1.45788 1.59926 1.07558 1.22420 1.21492 0.98145 0.86606 0.92953 1.22673 0.99615 0.92795 0.98135 0.88880 1.23723 0.98371 0.97615 1.00216 1.22748 0.94229 0.88578 0.92927 0.89930 1.86422 1.45604 1.62738 1.43429 1.23096 1.00924 0.96191 0.96243 1.74623 1.07292 1.19612 1.07445 1.81987 1.21983 0.89169 1.13113 1.20133 1.03487 0.91578 0.95327 1.98379 1.67877 1.77058 1.59582 1.20738 0.98529 0.99282 0.92735 0.74265 0.87780 1.21471 1.22566 0.82455 0.82091 0.89857 0.89866 0.83214 0.85848 0.74552 0.74964 0.90809 0.91567 0.90743 0.88290 0.75228 0.87000 0.91156 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.70 12.74 -148.98 -1.90 -0.19 16 2 C -0.07 0.19 2.81 71.23 0.20 0.39 16 3 Si 0.76 -1.90 29.78 68.60 2.04 0.14 16 4 C -0.11 -0.28 5.42 -19.85 -0.11 -0.39 16 5 C -0.04 -0.01 9.60 22.26 0.21 0.20 16 6 C -0.19 0.04 9.04 22.36 0.20 0.24 16 7 C 0.14 0.41 6.68 22.52 0.15 0.56 16 8 O -0.30 -0.03 9.60 -92.74 -0.89 -0.92 16 9 C 0.05 -0.24 4.94 71.98 0.36 0.12 16 10 C 0.12 -1.00 6.91 86.38 0.60 -0.40 16 11 N -0.35 0.91 3.69 -347.08 -1.28 -0.38 16 12 C 0.12 -0.26 11.27 83.85 0.95 0.69 16 13 C -0.12 -0.45 6.99 40.81 0.29 -0.16 16 14 C 0.60 3.64 7.82 86.69 0.68 4.32 16 15 O -0.57 -6.38 16.86 -4.00 -0.07 -6.45 16 16 N -0.71 -1.65 5.55 -466.29 -2.59 -4.24 16 17 C 0.13 0.06 5.51 86.38 0.48 0.54 16 18 C -0.11 0.17 3.69 -10.27 -0.04 0.14 16 19 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 20 C -0.16 0.53 7.47 31.12 0.23 0.76 16 21 C 0.07 -0.17 5.27 31.12 0.16 -0.01 16 22 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 23 O -0.57 -0.26 13.59 -148.98 -2.03 -2.28 16 24 C -0.13 0.24 7.47 31.12 0.23 0.47 16 25 N -0.22 -1.20 12.04 -49.99 -0.60 -1.80 16 26 N -0.08 -0.33 13.65 37.02 0.51 0.18 16 27 C -0.08 -0.47 6.33 22.41 0.14 -0.33 16 28 Cl -0.06 -0.37 28.51 -2.72 -0.08 -0.45 16 29 C -0.09 -0.53 8.45 22.28 0.19 -0.34 16 30 H 0.41 -5.39 8.74 -74.06 -0.65 -6.03 16 31 H 0.10 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H -0.29 -0.92 7.11 99.48 0.71 -0.22 16 33 H -0.30 -1.69 7.11 99.48 0.71 -0.99 16 34 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 35 H 0.16 -0.78 6.30 -2.91 -0.02 -0.79 16 36 H 0.08 -0.38 7.66 -2.39 -0.02 -0.40 16 37 H 0.08 -0.55 7.66 -2.39 -0.02 -0.56 16 38 H 0.15 -2.00 8.08 -2.39 -0.02 -2.02 16 39 H 0.12 -1.10 8.14 -2.38 -0.02 -1.12 16 40 H 0.24 -2.11 8.06 -2.91 -0.02 -2.13 16 41 H 0.41 0.20 8.16 -92.70 -0.76 -0.55 16 42 H 0.07 0.05 7.84 -2.39 -0.02 0.03 16 43 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.10 -0.45 7.90 -2.38 -0.02 -0.47 16 46 H 0.40 -2.99 9.12 -74.06 -0.68 -3.67 16 47 H 0.11 -0.54 8.10 -2.38 -0.02 -0.56 16 48 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.13 0.75 4.87 -2.91 -0.01 0.74 16 Total: 0.00 -27.33 433.28 -2.96 -30.29 By element: Atomic # 1 Polarization: -19.69 SS G_CDS: -0.99 Total: -20.69 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.92 Total: 6.80 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -3.97 Total: -6.24 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -4.88 Total: -9.85 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.04 Total: 0.14 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -27.33 -2.96 -30.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_7143556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.233 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds