Wall clock time and date at job start Tue Mar 9 2021 13:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.47054 * 2 1 4 4 C 1.50706 * 109.46837 * 240.00008 * 2 1 3 5 5 C 1.34232 * 126.49663 * 104.97658 * 4 2 1 6 6 N 1.36839 * 109.93459 * 180.02562 * 5 4 2 7 7 C 1.46502 * 125.05881 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46944 * 265.02314 * 7 6 5 9 9 O 1.21278 * 120.00011 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00108 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47358 * 180.02562 * 11 10 8 13 13 H 1.09006 * 112.84644 * 314.67157 * 12 11 10 14 14 C 1.53778 * 113.61178 * 85.86083 * 12 11 10 15 15 C 1.53959 * 87.01559 * 139.95499 * 14 12 11 16 16 H 1.08996 * 113.66901 * 220.06469 * 15 14 12 17 17 O 1.42903 * 113.61291 * 89.20042 * 15 14 12 18 18 C 1.53773 * 113.61819 * 183.47378 * 12 11 10 19 19 C 1.37685 * 109.87604 * 359.76444 * 6 5 4 20 20 C 1.39083 * 133.51416 * 179.56457 * 19 6 5 21 21 C 1.37787 * 119.77868 * 180.38979 * 20 19 6 22 22 C 1.38793 * 120.66946 * 0.25323 * 21 20 19 23 23 C 1.36663 * 120.52656 * 0.02562 * 22 21 20 24 24 C 1.39595 * 119.75974 * 359.97438 * 23 22 21 25 25 H 0.96701 * 113.99828 * 59.99915 * 1 2 3 26 26 H 1.09002 * 109.47317 * 119.99817 * 2 1 3 27 27 H 1.48494 * 110.00217 * 60.00108 * 3 2 1 28 28 H 1.48499 * 109.99678 * 181.32363 * 3 2 1 29 29 H 1.08000 * 125.03614 * 0.05767 * 5 4 2 30 30 H 1.08994 * 109.47474 * 25.02200 * 7 6 5 31 31 H 1.08998 * 109.46903 * 145.02442 * 7 6 5 32 32 H 0.96999 * 119.99799 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.47541 * 300.00216 * 11 10 8 34 34 H 1.08998 * 109.47087 * 60.00149 * 11 10 8 35 35 H 1.08998 * 113.61617 * 254.53090 * 14 12 11 36 36 H 1.09001 * 113.61666 * 25.44291 * 14 12 11 37 37 H 0.96699 * 114.00077 * 82.46605 * 17 15 14 38 38 H 1.09007 * 113.61114 * 334.56622 * 18 12 11 39 39 H 1.08997 * 113.61807 * 105.38498 * 18 12 11 40 40 H 1.08002 * 120.11260 * 0.67091 * 20 19 6 41 41 H 1.08001 * 119.67092 * 180.23237 * 21 20 19 42 42 H 1.08001 * 119.73567 * 180.02562 * 22 21 20 43 43 H 1.07992 * 120.12186 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4603 -0.1376 -2.3231 6 7 2.8019 -1.0990 -3.2350 7 6 3.4056 -0.8402 -4.5445 8 6 2.3251 -0.7835 -5.5935 9 8 1.1649 -0.9430 -5.2782 10 7 2.6479 -0.5555 -6.8820 11 6 1.5976 -0.5010 -7.9017 12 6 2.2281 -0.2319 -9.2696 13 1 2.9750 0.5617 -9.2426 14 6 2.7070 -1.5043 -9.9881 15 6 2.1638 -0.8790 -11.2859 16 1 1.6628 -1.5931 -11.9394 17 8 3.1198 -0.0714 -11.9760 18 6 1.1995 -0.0714 -10.4013 19 6 2.4980 -2.3459 -2.7366 20 6 2.6279 -3.6361 -3.2397 21 6 2.2143 -4.7106 -2.4829 22 6 1.6637 -4.5193 -1.2233 23 6 1.5215 -3.2600 -0.7118 24 6 1.9338 -2.1570 -1.4616 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5616 2.4679 1.2084 28 1 3.5346 1.7702 -0.0322 29 1 2.5967 0.9248 -2.4618 30 1 3.9367 0.1113 -4.5182 31 1 4.1053 -1.6402 -4.7865 32 1 3.5759 -0.4283 -7.1342 33 1 1.0666 -1.4525 -7.9277 34 1 0.8978 0.2990 -7.6601 35 1 3.7899 -1.6280 -9.9819 36 1 2.1752 -2.4051 -9.6818 37 1 3.7292 -0.5737 -12.5340 38 1 0.2548 -0.5798 -10.2080 39 1 1.0660 0.9601 -10.7271 40 1 3.0556 -3.7954 -4.2186 41 1 2.3195 -5.7119 -2.8737 42 1 1.3449 -5.3724 -0.6428 43 1 1.0925 -3.1187 0.2691 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:46 Heat of formation + Delta-G solvation = -21.257014 kcal Electronic energy + Delta-G solvation = -26049.391049 eV Core-core repulsion = 22255.716461 eV Total energy + Delta-G solvation = -3793.674588 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53157 -40.93238 -40.06159 -38.11035 -37.63160 -36.48972 -34.95012 -34.04980 -31.57414 -30.24854 -29.76647 -28.07118 -26.70302 -25.69106 -23.87903 -23.44413 -22.62668 -21.72501 -20.72673 -20.48262 -18.77562 -18.41653 -17.90896 -17.75045 -17.30444 -16.82914 -16.60040 -16.41474 -16.16612 -15.95527 -15.69870 -15.37255 -15.21537 -14.87442 -14.72767 -14.46256 -14.39631 -14.06616 -13.85197 -13.64812 -13.36558 -13.20495 -12.90068 -12.73209 -12.57651 -12.24269 -12.18654 -12.11030 -11.84077 -11.81641 -11.20156 -11.15058 -10.66868 -10.53550 -10.30549 -10.16115 -9.16820 -8.63470 -4.99640 0.13150 0.62014 1.36704 1.41444 1.48426 1.68749 1.70903 1.99901 2.23628 2.93195 3.16453 3.49941 3.59335 3.61471 3.68688 3.69544 3.74618 3.80732 3.88091 3.97836 4.04531 4.16004 4.20267 4.27651 4.29135 4.46984 4.50132 4.55292 4.65441 4.70692 4.76584 4.77576 4.83606 4.87047 4.87834 5.04991 5.12077 5.17193 5.30461 5.46507 5.49113 5.64513 5.72273 5.74404 6.19317 6.22967 6.48733 6.81749 6.86814 7.14904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.047 4.047 3 Si 0.794 3.206 4 C -0.225 4.225 5 C 0.079 3.921 6 N -0.467 5.467 7 C 0.088 3.912 8 C 0.491 3.509 9 O -0.572 6.572 10 N -0.710 5.710 11 C 0.133 3.867 12 C -0.106 4.106 13 H 0.103 0.897 14 C -0.159 4.159 15 C 0.073 3.927 16 H 0.077 0.923 17 O -0.572 6.572 18 C -0.132 4.132 19 C 0.090 3.910 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.154 4.154 23 C -0.091 4.091 24 C -0.118 4.118 25 H 0.390 0.610 26 H 0.092 0.908 27 H -0.301 1.301 28 H -0.274 1.274 29 H 0.209 0.791 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.419 0.581 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 1.473 -7.840 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.698 3.302 4 C -0.232 4.232 5 C -0.046 4.046 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.276 3.724 9 O -0.450 6.450 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.125 4.125 13 H 0.121 0.879 14 C -0.197 4.197 15 C 0.013 3.987 16 H 0.095 0.905 17 O -0.380 6.380 18 C -0.170 4.170 19 C -0.015 4.015 20 C -0.154 4.154 21 C -0.127 4.127 22 C -0.173 4.173 23 C -0.110 4.110 24 C -0.123 4.123 25 H 0.240 0.760 26 H 0.109 0.891 27 H -0.229 1.229 28 H -0.201 1.201 29 H 0.225 0.775 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.256 0.744 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.248 0.752 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.412 2.187 -6.666 8.861 hybrid contribution 0.347 -1.259 -0.041 1.306 sum 5.759 0.928 -6.707 8.889 Atomic orbital electron populations 1.86440 1.18307 1.82425 1.49986 1.24702 0.84382 1.11013 0.95485 0.93970 0.77492 0.73582 0.85170 1.20800 1.11509 0.91882 0.99051 1.22086 0.99124 0.95293 0.88126 1.43453 1.53351 1.03783 1.14351 1.21980 0.93814 1.09119 0.78747 1.21413 0.90439 0.76186 0.84363 1.90804 1.22334 1.50177 1.81712 1.45819 1.11992 1.72409 1.06146 1.21317 0.90125 1.01221 0.86417 1.22641 0.98956 0.99372 0.91498 0.87918 1.23713 1.02416 0.97133 0.96394 1.22772 0.90623 0.92937 0.92326 0.90517 1.86419 1.48661 1.38173 1.64776 1.23093 0.97597 1.01649 0.94692 1.18398 1.01805 0.87100 0.94206 1.20257 1.04976 0.89153 1.00983 1.21129 0.98281 0.99071 0.94259 1.20915 1.02343 0.96968 0.97062 1.20448 0.99215 0.91855 0.99491 1.19389 1.03718 0.93981 0.95187 0.76036 0.89056 1.22854 1.20055 0.77490 0.81771 0.84088 0.74364 0.92354 0.92415 0.89944 0.88919 0.75173 0.87837 0.91147 0.84864 0.83627 0.84636 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.89 12.88 -148.98 -1.92 -5.81 16 2 C -0.05 -0.22 3.06 71.24 0.22 -0.01 16 3 Si 0.79 -0.72 30.75 68.60 2.11 1.39 16 4 C -0.23 -1.41 5.57 -18.63 -0.10 -1.52 16 5 C 0.08 0.07 9.89 83.00 0.82 0.89 16 6 N -0.47 -0.86 2.27 -520.00 -1.18 -2.04 16 7 C 0.09 -0.63 6.48 85.63 0.56 -0.07 16 8 C 0.49 -0.55 7.90 87.66 0.69 0.14 16 9 O -0.57 -6.04 16.43 -3.02 -0.05 -6.09 16 10 N -0.71 4.71 5.56 -463.07 -2.57 2.14 16 11 C 0.13 -0.47 5.50 86.38 0.47 0.00 16 12 C -0.11 0.65 3.68 -10.27 -0.04 0.61 16 13 H 0.10 -0.63 8.14 -2.38 -0.02 -0.65 16 14 C -0.16 1.15 7.48 31.18 0.23 1.38 16 15 C 0.07 -0.35 5.28 31.18 0.16 -0.19 16 16 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 17 O -0.57 1.52 13.59 -148.98 -2.02 -0.51 16 18 C -0.13 0.54 7.47 31.12 0.23 0.77 16 19 C 0.09 0.71 6.81 39.03 0.27 0.97 16 20 C -0.13 -0.77 10.00 22.37 0.22 -0.55 16 21 C -0.11 -0.60 10.01 22.30 0.22 -0.38 16 22 C -0.15 -1.17 9.97 22.03 0.22 -0.95 16 23 C -0.09 -0.99 10.05 22.23 0.22 -0.77 16 24 C -0.12 -1.29 6.35 -20.20 -0.13 -1.42 16 25 H 0.39 -0.21 8.70 -74.06 -0.64 -0.86 16 26 H 0.09 0.66 7.96 -2.39 -0.02 0.64 16 27 H -0.30 -2.02 7.11 99.48 0.71 -1.31 16 28 H -0.27 -0.60 7.11 99.48 0.71 0.11 16 29 H 0.21 -1.67 6.35 -2.91 -0.02 -1.69 16 30 H 0.16 -2.54 8.12 -2.39 -0.02 -2.56 16 31 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 32 H 0.42 -5.59 8.47 -92.71 -0.79 -6.37 16 33 H 0.06 -0.04 7.87 -2.39 -0.02 -0.06 16 34 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.09 -0.67 7.92 -2.39 -0.02 -0.69 16 37 H 0.40 -4.19 9.12 -74.06 -0.68 -4.86 16 38 H 0.10 -0.56 8.10 -2.38 -0.02 -0.58 16 39 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 41 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16 43 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -29.89 364.88 -2.37 -32.27 By element: Atomic # 1 Polarization: -19.26 SS G_CDS: -1.02 Total: -20.28 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 4.28 Total: -1.07 kcal Atomic # 7 Polarization: 3.85 SS G_CDS: -3.75 Total: 0.10 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -3.99 Total: -12.41 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.11 Total: 1.39 kcal Total: -29.89 -2.37 -32.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.011 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds