Wall clock time and date at job start Tue Mar 9 2021 13:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.53004 * 109.46789 * 240.00133 * 2 1 3 5 5 O 1.45206 * 109.46900 * 120.00471 * 2 1 3 6 6 C 1.34230 * 117.00115 * 59.99400 * 5 2 1 7 7 O 1.20823 * 119.99724 * 0.02562 * 6 5 2 8 8 C 1.50697 * 119.99616 * 179.97438 * 6 5 2 9 9 H 1.09000 * 112.85148 * 48.80853 * 8 6 5 10 10 C 1.53787 * 113.60917 * 180.02562 * 8 6 5 11 11 C 1.53784 * 87.07923 * 140.06705 * 10 8 6 12 12 H 1.09004 * 113.61162 * 220.01809 * 11 10 8 13 13 N 1.46499 * 113.61434 * 89.11404 * 11 10 8 14 14 C 1.34778 * 119.99940 * 155.00095 * 13 11 10 15 15 O 1.21280 * 119.99860 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99817 * 180.02562 * 14 13 11 17 17 O 1.42904 * 109.46869 * 179.97438 * 16 14 13 18 18 C 1.35915 * 117.00072 * 179.97438 * 17 16 14 19 19 C 1.38788 * 120.05757 * 179.72228 * 18 17 16 20 20 Br 1.89100 * 120.03870 * 0.02562 * 19 18 17 21 21 C 1.38247 * 119.92464 * 179.81376 * 19 18 17 22 22 C 1.38239 * 120.04371 * 0.44206 * 21 19 18 23 23 C 1.50700 * 119.93987 * 179.76601 * 22 21 19 24 24 O 1.42892 * 109.47447 * 245.02104 * 23 22 21 25 25 Si 1.86302 * 109.46909 * 5.02260 * 23 22 21 26 26 C 1.38278 * 120.11895 * 359.78907 * 22 21 19 27 27 C 1.38141 * 120.07338 * 359.97438 * 26 22 21 28 28 C 1.53779 * 87.08045 * 334.56667 * 11 10 8 29 29 H 1.09004 * 109.47282 * 300.00331 * 1 2 3 30 30 H 1.09003 * 109.46753 * 59.99868 * 1 2 3 31 31 H 1.08994 * 109.47837 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46752 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47484 * 300.00184 * 3 2 1 34 34 H 1.08999 * 109.46807 * 60.00220 * 3 2 1 35 35 H 1.09004 * 109.47150 * 300.00069 * 4 2 1 36 36 H 1.08997 * 109.47066 * 60.00341 * 4 2 1 37 37 H 1.09003 * 109.46763 * 180.02562 * 4 2 1 38 38 H 1.09004 * 113.61202 * 254.61458 * 10 8 6 39 39 H 1.08994 * 113.61447 * 25.51889 * 10 8 6 40 40 H 0.97000 * 120.00274 * 334.99936 * 13 11 10 41 41 H 1.08994 * 109.47235 * 299.99749 * 16 14 13 42 42 H 1.08990 * 109.47141 * 60.00062 * 16 14 13 43 43 H 1.07995 * 119.97408 * 180.18468 * 21 19 18 44 44 H 1.09001 * 109.46922 * 125.01911 * 23 22 21 45 45 H 0.96702 * 113.99835 * 60.00300 * 24 23 22 46 46 H 1.48504 * 109.99906 * 179.97438 * 25 23 22 47 47 H 1.48497 * 110.00120 * 301.31545 * 25 23 22 48 48 H 1.08000 * 119.96210 * 179.97438 * 26 22 21 49 49 H 1.08000 * 120.02395 * 179.97438 * 27 26 22 50 50 H 1.09006 * 113.61307 * 270.88660 * 28 11 10 51 51 H 1.08999 * 113.69146 * 139.99146 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1856 6 6 1.6532 -1.9685 1.3378 7 8 0.9565 -2.5027 0.5078 8 6 2.1181 -2.7438 2.5435 9 1 1.9549 -2.2092 3.4793 10 6 1.6203 -4.1987 2.5698 11 6 3.0137 -4.5831 3.0948 12 1 3.4017 -5.5076 2.6669 13 7 3.1229 -4.5406 4.5551 14 6 4.0453 -5.2956 5.1841 15 8 4.7846 -6.0105 4.5412 16 6 4.1572 -5.2523 6.6863 17 8 5.1991 -6.1330 7.1119 18 6 5.4326 -6.2121 8.4485 19 6 6.4260 -7.0521 8.9321 20 35 7.4571 -8.0876 7.7320 21 6 6.6638 -7.1275 10.2919 22 6 5.9069 -6.3741 11.1697 23 6 6.1646 -6.4622 12.6519 24 8 5.0229 -7.0250 13.3013 25 14 7.6503 -7.5430 12.9607 26 6 4.9135 -5.5403 10.6902 27 6 4.6750 -5.4574 9.3321 28 6 3.5386 -3.3152 2.4007 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 0.8195 -4.3732 3.2883 39 1 1.3993 -4.6024 1.5818 40 1 2.5314 -3.9691 5.0693 41 1 4.3878 -4.2356 7.0044 42 1 3.2127 -5.5664 7.1302 43 1 7.4385 -7.7786 10.6688 44 1 6.3526 -5.4642 13.0479 45 1 4.7966 -7.9148 12.9977 46 1 7.9153 -7.6374 14.4189 47 1 7.4191 -8.8973 12.3974 48 1 4.3234 -4.9531 11.3783 49 1 3.8987 -4.8062 8.9585 50 1 3.8420 -3.4775 1.3663 51 1 4.2867 -2.7757 2.9815 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12862686_6201210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:37 Heat of formation + Delta-G solvation = -121.674800 kcal Electronic energy + Delta-G solvation = -34077.982777 eV Core-core repulsion = 29185.348174 eV Total energy + Delta-G solvation = -4892.634603 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 442.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23427 -41.65564 -40.93026 -39.66435 -38.91095 -37.74376 -37.30840 -35.11139 -34.44022 -33.47660 -32.13159 -30.53491 -29.69530 -28.42943 -28.34377 -27.65850 -26.84504 -26.32117 -24.17808 -23.33644 -22.49282 -21.88406 -21.04712 -20.24016 -19.52296 -18.82068 -18.36656 -18.03843 -17.62265 -17.47227 -17.20747 -17.10157 -16.77256 -16.42482 -16.21381 -15.95625 -15.64761 -15.58146 -15.48082 -15.26135 -14.80706 -14.77457 -14.55189 -14.29140 -14.06204 -13.97417 -13.65078 -13.54126 -13.44710 -13.36600 -13.12363 -13.09416 -12.95687 -12.89780 -12.50872 -12.40967 -12.34954 -12.18114 -12.11466 -11.85409 -11.84385 -11.72165 -11.64653 -11.42557 -11.18879 -11.03426 -10.94632 -10.62331 -10.21788 -9.98148 -9.30601 -4.94738 -0.01083 0.10111 0.65838 1.14044 1.29013 1.37536 1.43561 1.56426 1.68045 1.92761 2.41222 2.47400 3.23022 3.32994 3.42441 3.46391 3.53893 3.62056 3.67558 3.71960 3.75523 3.80141 3.85198 3.91477 4.04220 4.06145 4.10472 4.10779 4.36083 4.47685 4.51117 4.53746 4.55200 4.62960 4.68152 4.69863 4.71442 4.77378 4.80081 4.81377 4.83500 4.88543 4.91488 4.99260 5.05744 5.08895 5.20253 5.24656 5.32260 5.43322 5.49503 5.55286 6.07244 6.43267 6.48130 6.78869 7.12708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.355 6.355 6 C 0.469 3.531 7 O -0.526 6.526 8 C -0.105 4.105 9 H 0.153 0.847 10 C -0.115 4.115 11 C 0.124 3.876 12 H 0.091 0.909 13 N -0.691 5.691 14 C 0.517 3.483 15 O -0.565 6.565 16 C 0.033 3.967 17 O -0.305 6.305 18 C 0.151 3.849 19 C -0.141 4.141 20 Br -0.052 7.052 21 C -0.057 4.057 22 C -0.149 4.149 23 C -0.061 4.061 24 O -0.543 6.543 25 Si 0.735 3.265 26 C -0.032 4.032 27 C -0.194 4.194 28 C -0.129 4.129 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.424 0.576 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.386 0.614 46 H -0.297 1.297 47 H -0.287 1.287 48 H 0.157 0.843 49 H 0.175 0.825 50 H 0.088 0.912 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 7.973 3.045 9.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.313 3.687 7 O -0.415 6.415 8 C -0.124 4.124 9 H 0.171 0.829 10 C -0.153 4.153 11 C 0.019 3.981 12 H 0.109 0.891 13 N -0.346 5.346 14 C 0.303 3.697 15 O -0.442 6.442 16 C -0.044 4.044 17 O -0.217 6.217 18 C 0.103 3.897 19 C -0.221 4.221 20 Br 0.034 6.966 21 C -0.077 4.077 22 C -0.150 4.150 23 C -0.172 4.172 24 O -0.351 6.351 25 Si 0.642 3.358 26 C -0.051 4.051 27 C -0.213 4.213 28 C -0.168 4.168 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.262 0.738 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.236 0.764 46 H -0.225 1.225 47 H -0.214 1.214 48 H 0.175 0.825 49 H 0.192 0.808 50 H 0.106 0.894 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.439 6.693 2.366 7.506 hybrid contribution -1.469 -0.391 -0.006 1.520 sum -3.908 6.302 2.360 7.782 Atomic orbital electron populations 1.22454 0.93912 1.03608 1.03727 1.22411 0.94554 0.93242 0.82611 1.21877 1.02342 0.91286 1.04090 1.22467 1.01731 1.02095 0.97551 1.86566 1.69685 1.25436 1.45514 1.23949 0.76492 0.80509 0.87756 1.90595 1.36280 1.70356 1.44256 1.22801 0.98675 0.95035 0.95891 0.82903 1.23267 0.96627 0.91728 1.03668 1.21666 0.97260 0.98964 0.80250 0.89059 1.45282 1.37083 1.45747 1.06481 1.20511 0.80021 0.79241 0.89929 1.90804 1.43712 1.41168 1.68502 1.22847 0.92927 0.97145 0.91528 1.86242 1.53450 1.62326 1.19684 1.18793 0.93684 0.94144 0.83069 1.21132 1.02083 1.04638 0.94222 1.96775 1.69326 1.69082 1.61448 1.20951 0.98633 0.98017 0.90072 1.20209 0.98983 0.99940 0.95870 1.24887 0.96570 1.06576 0.89140 1.86581 1.46729 1.36270 1.65540 0.94301 0.83138 0.79343 0.79046 1.21232 0.94285 0.94665 0.94868 1.21622 1.03000 1.03250 0.93404 1.23342 0.94792 0.96347 1.02303 0.91502 0.89785 0.91798 0.91353 0.88893 0.91039 0.91845 0.89725 0.91883 0.87666 0.88456 0.73755 0.84813 0.85162 0.83906 0.84456 0.76449 1.22453 1.21405 0.82511 0.80762 0.89370 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.13 8.37 71.98 0.60 0.47 16 2 C 0.11 0.09 1.13 -10.79 -0.01 0.07 16 3 C -0.14 0.45 8.85 71.98 0.64 1.09 16 4 C -0.18 -0.29 8.37 71.98 0.60 0.32 16 5 O -0.35 -0.73 9.89 -51.41 -0.51 -1.24 16 6 C 0.47 0.75 6.80 71.24 0.48 1.24 16 7 O -0.53 -3.61 11.40 21.97 0.25 -3.36 16 8 C -0.11 0.60 4.13 -11.01 -0.05 0.56 16 9 H 0.15 -1.79 8.14 -2.39 -0.02 -1.81 16 10 C -0.11 0.66 7.15 31.12 0.22 0.88 16 11 C 0.12 -0.49 4.32 45.52 0.20 -0.29 16 12 H 0.09 0.15 7.47 -2.39 -0.02 0.14 16 13 N -0.69 5.35 5.26 -440.03 -2.32 3.03 16 14 C 0.52 -0.33 7.91 87.66 0.69 0.37 16 15 O -0.56 -6.67 16.10 16.01 0.26 -6.41 16 16 C 0.03 -0.23 5.22 71.24 0.37 0.14 16 17 O -0.30 -0.90 9.01 -73.55 -0.66 -1.57 16 18 C 0.15 0.12 6.68 22.52 0.15 0.27 16 19 C -0.14 -0.52 6.24 22.40 0.14 -0.38 16 20 Br -0.05 -0.39 33.16 -20.37 -0.68 -1.07 16 21 C -0.06 -0.01 8.40 22.27 0.19 0.18 16 22 C -0.15 0.45 5.35 -19.85 -0.11 0.34 16 23 C -0.06 0.23 2.80 71.24 0.20 0.43 16 24 O -0.54 0.52 12.83 -148.98 -1.91 -1.39 16 25 Si 0.73 -1.42 29.88 68.60 2.05 0.63 16 26 C -0.03 0.18 9.68 22.26 0.22 0.40 16 27 C -0.19 1.17 9.04 22.36 0.20 1.37 16 28 C -0.13 0.54 7.43 31.12 0.23 0.77 16 29 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 0.32 5.89 -2.39 -0.01 0.31 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.06 0.38 5.89 -2.39 -0.01 0.36 16 36 H 0.08 -0.10 8.14 -2.39 -0.02 -0.11 16 37 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 38 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.10 -0.16 7.44 -2.39 -0.02 -0.18 16 40 H 0.42 -6.77 8.70 -92.71 -0.81 -7.58 16 41 H 0.13 -1.90 7.66 -2.39 -0.02 -1.92 16 42 H 0.13 -1.78 7.66 -2.39 -0.02 -1.79 16 43 H 0.14 -0.15 4.83 -2.91 -0.01 -0.16 16 44 H 0.14 -0.92 7.96 -2.39 -0.02 -0.94 16 45 H 0.39 -2.16 8.70 -74.06 -0.64 -2.81 16 46 H -0.30 -1.61 7.11 99.48 0.71 -0.90 16 47 H -0.29 -0.86 7.00 99.48 0.70 -0.17 16 48 H 0.16 -1.46 8.06 -2.91 -0.02 -1.48 16 49 H 0.18 -2.41 6.30 -2.91 -0.02 -2.43 16 50 H 0.09 -0.15 8.10 -2.38 -0.02 -0.17 16 51 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -28.57 435.58 1.02 -27.55 By element: Atomic # 1 Polarization: -23.95 SS G_CDS: -0.44 Total: -24.38 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 4.97 Total: 8.21 kcal Atomic # 7 Polarization: 5.35 SS G_CDS: -2.32 Total: 3.03 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -2.57 Total: -13.96 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.05 Total: 0.63 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.68 Total: -1.07 kcal Total: -28.57 1.02 -27.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12862686_6201210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.124 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds