Wall clock time and date at job start Tue Mar 9 2021 13:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47104 * 342.44220 * 3 2 1 5 5 C 1.53001 * 109.47339 * 102.44347 * 3 2 1 6 6 C 1.52998 * 109.47229 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47152 * 299.99860 * 6 5 3 8 8 H 1.09002 * 109.47452 * 300.00219 * 7 6 5 9 9 N 1.46500 * 109.47327 * 180.02562 * 7 6 5 10 10 C 1.34773 * 120.00431 * 155.00306 * 9 7 6 11 11 O 1.21623 * 119.99874 * 359.97438 * 10 9 7 12 12 C 1.47301 * 120.00070 * 179.72645 * 10 9 7 13 13 C 1.39819 * 120.13595 * 359.97438 * 12 10 9 14 14 C 1.37579 * 119.96462 * 179.67354 * 13 12 10 15 15 C 1.50695 * 119.88480 * 180.32263 * 14 13 12 16 16 O 1.42908 * 109.47324 * 105.30184 * 15 14 13 17 17 Si 1.86304 * 109.47078 * 345.30531 * 15 14 13 18 18 C 1.39153 * 120.23879 * 0.62933 * 14 13 12 19 19 O 1.35710 * 119.86223 * 179.69214 * 18 14 13 20 20 C 1.42899 * 116.99992 * 179.97438 * 19 18 14 21 21 C 1.38729 * 120.27244 * 359.67170 * 18 14 13 22 22 C 1.38402 * 120.03155 * 0.02562 * 21 18 14 23 23 O 1.35654 * 120.12060 * 180.02562 * 22 21 18 24 24 C 1.42906 * 117.00011 * 359.97438 * 23 22 21 25 25 C 1.52999 * 109.47259 * 60.00145 * 7 6 5 26 26 C 1.52999 * 109.46876 * 222.44497 * 3 2 1 27 27 H 4.18732 * 15.03874 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.46721 * 59.99364 * 5 3 2 29 29 H 1.08997 * 109.47038 * 300.00453 * 5 3 2 30 30 H 1.08999 * 109.46636 * 179.97438 * 6 5 3 31 31 H 1.08994 * 109.46992 * 60.00009 * 6 5 3 32 32 H 0.97000 * 119.99456 * 334.99869 * 9 7 6 33 33 H 1.08004 * 120.01363 * 0.02562 * 13 12 10 34 34 H 1.08996 * 109.47770 * 225.30570 * 15 14 13 35 35 H 0.96698 * 113.99951 * 300.01024 * 16 15 14 36 36 H 1.48508 * 109.99690 * 58.67874 * 17 15 14 37 37 H 1.48496 * 110.00306 * 179.97438 * 17 15 14 38 38 H 1.09004 * 109.46641 * 60.00262 * 20 19 18 39 39 H 1.09000 * 109.47604 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.46977 * 300.00569 * 20 19 18 41 41 H 1.07993 * 119.98601 * 180.02562 * 21 18 14 42 42 H 1.08992 * 109.46818 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.46993 * 300.00244 * 24 23 22 44 44 H 1.08997 * 109.46567 * 60.00145 * 24 23 22 45 45 H 1.09008 * 109.47252 * 59.99831 * 25 7 6 46 46 H 1.08995 * 109.47658 * 180.02562 * 25 7 6 47 47 H 1.09008 * 109.46860 * 299.99705 * 26 3 2 48 48 H 1.08999 * 109.47724 * 60.00241 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9789 0.3100 5 6 3.1559 0.3117 -1.4086 6 6 4.6859 0.3130 -1.4084 7 6 5.1949 1.3781 -0.4351 8 1 4.8307 2.3575 -0.7452 9 7 6.6599 1.3798 -0.4354 10 6 7.3326 2.4940 -0.0856 11 8 6.7234 3.4983 0.2298 12 6 8.8056 2.4938 -0.0801 13 6 9.5087 1.3391 -0.4367 14 6 10.8845 1.3448 -0.4368 15 6 11.6405 0.1015 -0.8285 16 8 12.1854 0.2682 -2.1391 17 14 10.4829 -1.3582 -0.8184 18 6 11.5805 2.4927 -0.0704 19 8 12.9376 2.4880 -0.0672 20 6 13.5897 3.6996 0.3187 21 6 10.8929 3.6420 0.2912 22 6 9.5089 3.6507 0.2893 23 8 8.8346 4.7737 0.6421 24 6 9.6170 5.9130 1.0055 25 6 4.6850 1.0671 0.9735 26 6 3.1554 1.0654 0.9735 27 1 -1.0500 -0.0011 -0.0002 28 1 2.7920 1.2913 -1.7186 29 1 2.7929 -0.4467 -2.1021 30 1 5.0490 0.5342 -2.4121 31 1 5.0500 -0.6664 -1.0983 32 1 7.1457 0.5789 -0.6873 33 1 8.9721 0.4448 -0.7174 34 1 12.4490 -0.0712 -0.1182 35 1 11.5213 0.4261 -2.8239 36 1 9.3588 -1.1214 -1.7596 37 1 11.2162 -2.5907 -1.2036 38 1 13.2953 3.9629 1.3346 39 1 14.6699 3.5599 0.2777 40 1 13.3011 4.5003 -0.3623 41 1 11.4377 4.5304 0.5744 42 1 8.9560 6.7397 1.2651 43 1 10.2427 5.6654 1.8630 44 1 10.2491 6.2023 0.1660 45 1 5.0492 0.0876 1.2837 46 1 5.0472 1.8260 1.6669 47 1 2.7916 2.0450 0.6635 48 1 2.7923 0.8438 1.9771 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_12297780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:27 Heat of formation + Delta-G solvation = -58.740781 kcal Electronic energy + Delta-G solvation = -30937.386465 eV Core-core repulsion = 26733.292559 eV Total energy + Delta-G solvation = -4204.093906 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10560 -40.88770 -40.05498 -39.19747 -38.48236 -37.05501 -35.80157 -33.58396 -32.25467 -31.85120 -31.80547 -29.83030 -28.97679 -28.09013 -26.12666 -25.02357 -23.73401 -23.72820 -22.57829 -21.47000 -21.08087 -20.03882 -19.02722 -18.81050 -18.22032 -17.99682 -17.22977 -17.17494 -16.64211 -16.54743 -16.30233 -16.09214 -15.82318 -15.78792 -15.68037 -15.42919 -15.24105 -15.13924 -14.67831 -14.20388 -14.12405 -13.96053 -13.81620 -13.51510 -13.21024 -13.18961 -12.71950 -12.68275 -12.53446 -12.51771 -12.28108 -12.17309 -12.11152 -11.88740 -11.77056 -11.66857 -11.57633 -10.97837 -10.89153 -10.81196 -10.52638 -10.07380 -9.90755 -9.18069 -4.88357 -0.24225 0.09080 1.33052 1.57707 1.75850 1.88965 1.92176 2.00474 2.11756 2.13327 2.19408 2.62556 3.40906 3.45309 3.48521 3.60100 3.70711 3.75580 3.78644 3.83057 4.10117 4.14049 4.16008 4.22456 4.24704 4.27052 4.27570 4.28327 4.29979 4.42328 4.46592 4.51341 4.58144 4.63835 4.67511 4.72480 4.77134 4.78623 4.92053 5.03709 5.08294 5.10260 5.15088 5.16925 5.25632 5.31447 5.34439 5.41420 5.56102 6.04451 6.30013 6.57607 6.58186 6.72096 7.28993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C 0.021 3.979 4 H 0.109 0.891 5 C -0.103 4.103 6 C -0.119 4.119 7 C 0.147 3.853 8 H 0.063 0.937 9 N -0.715 5.715 10 C 0.563 3.437 11 O -0.564 6.564 12 C -0.226 4.226 13 C 0.001 3.999 14 C -0.197 4.197 15 C -0.073 4.073 16 O -0.547 6.547 17 Si 0.761 3.239 18 C 0.214 3.786 19 O -0.312 6.312 20 C 0.012 3.988 21 C -0.311 4.311 22 C 0.217 3.783 23 O -0.304 6.304 24 C 0.011 3.989 25 C -0.122 4.122 26 C -0.103 4.103 27 H 0.236 0.764 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.164 0.836 34 H 0.112 0.888 35 H 0.384 0.616 36 H -0.251 1.251 37 H -0.301 1.301 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.162 0.838 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 -2.048 1.227 3.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.208 4.208 3 C 0.003 3.997 4 H 0.127 0.873 5 C -0.141 4.141 6 C -0.157 4.157 7 C 0.042 3.958 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.352 3.648 11 O -0.443 6.443 12 C -0.230 4.230 13 C -0.017 4.017 14 C -0.199 4.199 15 C -0.180 4.180 16 O -0.354 6.354 17 Si 0.664 3.336 18 C 0.166 3.834 19 O -0.224 6.224 20 C -0.082 4.082 21 C -0.331 4.331 22 C 0.167 3.833 23 O -0.215 6.215 24 C -0.084 4.084 25 C -0.160 4.160 26 C -0.141 4.141 27 H 0.253 0.747 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.248 0.752 33 H 0.181 0.819 34 H 0.130 0.870 35 H 0.233 0.767 36 H -0.176 1.176 37 H -0.229 1.229 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.179 0.821 42 H 0.130 0.870 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.003 -2.128 1.268 3.186 hybrid contribution 0.419 1.117 -0.921 1.507 sum 2.422 -1.011 0.347 2.647 Atomic orbital electron populations 1.25669 0.96989 1.00554 1.00112 1.23626 0.95274 1.00863 1.01045 1.18460 0.83536 1.00997 0.96738 0.87291 1.21459 0.94888 1.02528 0.95260 1.21787 0.95091 0.99364 0.99409 1.20982 0.78679 1.00089 0.96022 0.91826 1.45848 1.07239 1.14223 1.69458 1.18057 0.86996 0.83160 0.76555 1.90822 1.70209 1.34196 1.49118 1.19155 0.92767 0.94302 1.16773 1.21005 0.92294 0.96325 0.92097 1.19500 0.92992 0.96164 1.11207 1.25119 1.05355 1.01501 0.86060 1.86617 1.37966 1.93647 1.17214 0.94310 0.77006 0.72886 0.89390 1.18940 0.82970 0.92514 0.88964 1.86142 1.15722 1.38799 1.81713 1.23458 0.99064 0.84843 1.00818 1.21411 0.93177 1.01308 1.17156 1.19000 0.89871 0.86176 0.88208 1.86367 1.36078 1.19654 1.79404 1.23459 0.97679 0.86287 1.00942 1.21848 0.94804 1.02895 0.96468 1.21440 0.95031 0.98291 0.99361 0.74703 0.92398 0.90081 0.90159 0.88509 0.75217 0.81926 0.86979 0.76733 1.17638 1.22912 0.90990 0.86325 0.91581 0.82090 0.86982 0.90915 0.91214 0.89255 0.93094 0.92826 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.62 19.25 74.32 1.43 0.81 16 2 C -0.21 -0.79 12.56 31.13 0.39 -0.40 16 3 C 0.02 -0.01 2.57 -12.60 -0.03 -0.05 16 4 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 5 C -0.10 0.25 5.16 30.59 0.16 0.41 16 6 C -0.12 0.59 5.39 30.59 0.16 0.76 16 7 C 0.15 0.04 2.45 44.99 0.11 0.15 16 8 H 0.06 0.40 7.58 -2.39 -0.02 0.38 16 9 N -0.72 0.01 5.03 -445.93 -2.24 -2.23 16 10 C 0.56 4.26 7.72 86.63 0.67 4.93 16 11 O -0.56 -9.25 14.81 16.86 0.25 -9.00 16 12 C -0.23 -1.05 5.89 -20.00 -0.12 -1.17 16 13 C 0.00 0.00 8.14 22.50 0.18 0.18 16 14 C -0.20 -0.06 5.27 -19.80 -0.10 -0.17 16 15 C -0.07 0.04 2.37 71.23 0.17 0.21 16 16 O -0.55 -1.49 12.88 -148.98 -1.92 -3.41 16 17 Si 0.76 -3.79 30.23 68.60 2.07 -1.71 16 18 C 0.21 0.48 6.67 22.61 0.15 0.63 16 19 O -0.31 -0.67 9.80 -90.31 -0.88 -1.56 16 20 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 21 C -0.31 -0.50 8.01 22.43 0.18 -0.32 16 22 C 0.22 1.29 6.70 22.82 0.15 1.45 16 23 O -0.30 -2.57 8.56 -68.73 -0.59 -3.16 16 24 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 25 C -0.12 -0.02 5.49 30.58 0.17 0.15 16 26 C -0.10 -0.08 5.16 30.58 0.16 0.07 16 27 H 0.24 -0.78 7.80 -4.42 -0.03 -0.81 16 28 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.41 -2.70 6.62 -92.71 -0.61 -3.31 16 33 H 0.16 -1.19 3.16 -2.91 -0.01 -1.19 16 34 H 0.11 0.02 7.82 -2.39 -0.02 0.00 16 35 H 0.38 -1.44 8.70 -74.06 -0.64 -2.08 16 36 H -0.25 1.46 6.69 99.48 0.67 2.12 16 37 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 38 H 0.07 -0.54 7.65 -2.39 -0.02 -0.56 16 39 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.07 -0.43 7.65 -2.39 -0.02 -0.44 16 41 H 0.16 -0.51 4.50 -2.91 -0.01 -0.52 16 42 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 44 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 45 H 0.09 -0.35 8.14 -2.38 -0.02 -0.37 16 46 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 48 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 Total: 0.00 -24.34 389.84 2.48 -21.86 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: -0.27 Total: -10.60 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.05 Total: 9.81 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -2.24 Total: -2.23 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -3.14 Total: -17.12 kcal Atomic # 14 Polarization: -3.79 SS G_CDS: 2.07 Total: -1.71 kcal Total: -24.34 2.48 -21.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_12297780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.878 kcal (2) G-P(sol) polarization free energy of solvation -24.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds