Wall clock time and date at job start Tue Mar 9 2021 13:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47194 * 180.44099 * 3 2 1 5 5 C 1.52997 * 109.47240 * 300.44680 * 3 2 1 6 6 C 1.53002 * 109.46817 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46972 * 299.99733 * 6 5 3 8 8 H 1.09000 * 109.47380 * 299.99696 * 7 6 5 9 9 N 1.46510 * 109.46858 * 180.02562 * 7 6 5 10 10 C 1.34773 * 119.99925 * 155.00046 * 9 7 6 11 11 O 1.21579 * 119.99903 * 359.97438 * 10 9 7 12 12 C 1.47697 * 120.00298 * 179.97438 * 10 9 7 13 13 C 1.39806 * 120.15659 * 180.02562 * 12 10 9 14 14 F 1.35099 * 120.08230 * 359.97438 * 13 12 10 15 15 C 1.38314 * 119.82699 * 180.02562 * 13 12 10 16 16 C 1.38176 * 120.14789 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.84353 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.46865 * 15.00383 * 17 16 15 19 19 Si 1.86301 * 109.47221 * 134.99885 * 17 16 15 20 20 C 1.38657 * 120.31644 * 359.97438 * 16 15 13 21 21 F 1.35101 * 119.91488 * 180.02562 * 20 16 15 22 22 C 1.38062 * 120.16398 * 359.72663 * 20 16 15 23 23 C 1.52997 * 109.47131 * 60.00459 * 7 6 5 24 24 C 1.52999 * 109.46991 * 299.99311 * 23 7 6 25 25 H 4.18748 * 15.03845 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99895 * 5 3 2 27 27 H 1.08996 * 109.46952 * 60.00066 * 5 3 2 28 28 H 1.08996 * 109.47407 * 60.00219 * 6 5 3 29 29 H 1.09000 * 109.46986 * 179.97438 * 6 5 3 30 30 H 0.96994 * 119.99768 * 334.99990 * 9 7 6 31 31 H 1.08008 * 119.92236 * 180.02562 * 15 13 12 32 32 H 1.08997 * 109.47203 * 254.99937 * 17 16 15 33 33 H 0.96696 * 114.00262 * 59.99367 * 18 17 16 34 34 H 1.48502 * 109.99773 * 58.68280 * 19 17 16 35 35 H 1.48502 * 109.99963 * 180.02562 * 19 17 16 36 36 H 1.08006 * 120.07845 * 180.27595 * 22 20 16 37 37 H 1.09002 * 109.47153 * 179.97438 * 23 7 6 38 38 H 1.08993 * 109.47194 * 60.00154 * 23 7 6 39 39 H 1.08993 * 109.47839 * 300.00447 * 24 23 7 40 40 H 1.09000 * 109.47160 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0285 0.0079 5 6 3.1564 -0.7301 1.2435 6 6 4.6864 -0.7288 1.2438 7 6 5.1971 -1.4397 -0.0110 8 1 4.8347 -2.4676 -0.0192 9 7 6.6622 -1.4390 -0.0105 10 6 7.3368 -2.3893 -0.6874 11 8 6.7295 -3.2474 -1.2981 12 6 8.8137 -2.3883 -0.6873 13 6 9.5168 -3.3723 -1.3889 14 9 8.8468 -4.3281 -2.0691 15 6 10.8999 -3.3652 -1.3838 16 6 11.5863 -2.3885 -0.6880 17 6 13.0933 -2.3876 -0.6867 18 8 13.5710 -3.2452 -1.7251 19 14 13.7136 -0.6552 -0.9776 20 6 10.8952 -1.4091 0.0089 21 9 11.5745 -0.4576 0.6860 22 6 9.5146 -1.4002 0.0075 23 6 4.6868 -0.7090 -1.2546 24 6 3.1568 -0.7103 -1.2549 25 1 -1.0501 -0.0010 0.0005 26 1 2.7928 -0.2233 2.1375 27 1 2.7935 -1.7578 1.2355 28 1 5.0489 0.2991 1.2520 29 1 5.0500 -1.2490 2.1299 30 1 7.1466 -0.7545 0.4770 31 1 11.4445 -4.1244 -1.9256 32 1 13.4560 -2.7464 0.2765 33 1 13.2863 -2.9854 -2.6120 34 1 13.1976 0.2530 0.0780 35 1 15.1986 -0.6409 -0.9791 36 1 8.9776 -0.6340 0.5472 37 1 5.0510 -1.2152 -2.1486 38 1 5.0493 0.3189 -1.2464 39 1 2.7942 -1.7381 -1.2631 40 1 2.7932 -0.1901 -2.1411 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_12360598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:02 Heat of formation + Delta-G solvation = -68.295995 kcal Electronic energy + Delta-G solvation = -26680.697757 eV Core-core repulsion = 22485.721176 eV Total energy + Delta-G solvation = -4194.976580 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.42215 -50.07804 -41.51291 -40.24442 -39.29315 -37.64712 -35.98500 -33.87315 -32.82223 -31.84909 -31.41652 -30.09423 -27.82022 -24.67653 -24.19013 -23.77540 -23.21649 -21.72812 -21.26912 -19.56709 -19.08023 -19.02640 -18.54660 -17.87387 -17.51590 -17.26869 -16.98564 -16.72299 -16.16027 -16.01851 -15.90734 -15.73362 -15.71021 -15.41138 -15.19158 -15.05375 -14.51488 -14.17833 -14.06724 -13.92409 -13.69726 -13.25788 -13.23923 -12.95036 -12.78088 -12.47669 -12.32775 -12.15874 -11.94742 -11.63598 -11.54662 -11.13421 -10.99083 -10.95907 -10.90330 -10.27217 -10.14213 -9.70045 -4.98735 -0.75963 -0.25992 1.15711 1.49748 1.66479 1.85898 1.86548 1.90736 1.99839 2.31222 2.82013 2.86032 3.15162 3.21590 3.37897 3.53695 3.54701 3.66274 3.73916 3.83857 4.06796 4.14778 4.21850 4.23531 4.33833 4.37826 4.41235 4.41889 4.46904 4.63537 4.68985 4.74609 4.76915 4.80407 5.00687 5.05983 5.11030 5.12975 5.21138 5.29236 5.33156 5.42136 5.45646 6.35594 6.64198 6.69825 7.03636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.209 4.209 3 C 0.021 3.979 4 H 0.108 0.892 5 C -0.104 4.104 6 C -0.117 4.117 7 C 0.144 3.856 8 H 0.067 0.933 9 N -0.703 5.703 10 C 0.557 3.443 11 O -0.564 6.564 12 C -0.158 4.158 13 C 0.138 3.862 14 F -0.128 7.128 15 C -0.117 4.117 16 C -0.084 4.084 17 C -0.073 4.073 18 O -0.548 6.548 19 Si 0.764 3.236 20 C 0.072 3.928 21 F -0.121 7.121 22 C -0.068 4.068 23 C -0.122 4.122 24 C -0.104 4.104 25 H 0.236 0.764 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.417 0.583 31 H 0.174 0.826 32 H 0.128 0.872 33 H 0.400 0.600 34 H -0.252 1.252 35 H -0.304 1.304 36 H 0.183 0.817 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 5.922 1.287 6.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.209 4.209 3 C 0.003 3.997 4 H 0.126 0.874 5 C -0.142 4.142 6 C -0.154 4.154 7 C 0.040 3.960 8 H 0.085 0.915 9 N -0.355 5.355 10 C 0.345 3.655 11 O -0.443 6.443 12 C -0.162 4.162 13 C 0.118 3.882 14 F -0.106 7.106 15 C -0.135 4.135 16 C -0.086 4.086 17 C -0.182 4.182 18 O -0.356 6.356 19 Si 0.668 3.332 20 C 0.052 3.948 21 F -0.100 7.100 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.142 4.142 25 H 0.253 0.747 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.255 0.745 31 H 0.191 0.809 32 H 0.145 0.855 33 H 0.251 0.749 34 H -0.177 1.177 35 H -0.232 1.232 36 H 0.200 0.800 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.297 5.676 1.681 6.060 hybrid contribution -0.329 -0.627 0.437 0.832 sum 0.968 5.049 2.118 5.560 Atomic orbital electron populations 1.25684 0.97012 1.00550 0.99988 1.23626 0.95291 1.00899 1.01124 1.18461 0.83538 1.01683 0.96050 0.87383 1.21469 0.94961 1.00720 0.97087 1.21772 0.95002 1.02465 0.96193 1.21064 0.78286 1.00375 0.96253 0.91523 1.45817 1.07474 1.30317 1.51881 1.18118 0.86732 0.81583 0.79115 1.90873 1.70228 1.38775 1.44436 1.19810 0.93435 0.98658 1.04287 1.17976 0.90405 0.86896 0.92971 1.91593 1.80800 1.61366 1.76885 1.20873 0.90569 1.00339 1.01744 1.20466 0.97922 0.93660 0.96509 1.25196 0.89734 1.08135 0.95088 1.86500 1.75679 1.54428 1.19001 0.94263 0.77379 0.73845 0.87763 1.17297 0.90090 0.89479 0.97898 1.91604 1.78595 1.61696 1.78064 1.21299 0.92013 0.97970 0.97416 1.21853 0.94921 1.01794 0.97489 1.21450 0.94948 1.00569 0.97247 0.74708 0.90035 0.92316 0.88470 0.89827 0.74466 0.80899 0.85538 0.74895 1.17710 1.23233 0.80015 0.93011 0.89333 0.92700 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.48 19.25 74.32 1.43 0.95 16 2 C -0.21 -0.63 12.56 31.13 0.39 -0.24 16 3 C 0.02 -0.04 2.56 -12.60 -0.03 -0.07 16 4 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 5 C -0.10 0.40 5.16 30.59 0.16 0.56 16 6 C -0.12 0.84 5.39 30.59 0.16 1.01 16 7 C 0.14 -0.31 2.45 44.99 0.11 -0.20 16 8 H 0.07 0.26 7.57 -2.39 -0.02 0.24 16 9 N -0.70 2.51 5.03 -445.54 -2.24 0.27 16 10 C 0.56 2.22 7.73 86.74 0.67 2.89 16 11 O -0.56 -7.76 15.00 -3.96 -0.06 -7.82 16 12 C -0.16 -0.04 5.88 -20.06 -0.12 -0.16 16 13 C 0.14 0.38 7.28 22.67 0.17 0.55 16 14 F -0.13 -1.22 15.55 44.97 0.70 -0.52 16 15 C -0.12 0.29 9.20 22.27 0.20 0.49 16 16 C -0.08 0.33 5.14 -19.78 -0.10 0.23 16 17 C -0.07 0.32 2.96 71.24 0.21 0.53 16 18 O -0.55 2.36 11.63 -148.98 -1.73 0.63 16 19 Si 0.76 -3.41 30.81 68.60 2.11 -1.30 16 20 C 0.07 -0.29 6.65 22.33 0.15 -0.14 16 21 F -0.12 0.26 12.80 44.97 0.58 0.84 16 22 C -0.07 0.39 9.51 22.57 0.21 0.61 16 23 C -0.12 0.20 5.50 30.59 0.17 0.37 16 24 C -0.10 0.04 5.16 30.60 0.16 0.20 16 25 H 0.24 -0.90 7.80 -4.41 -0.03 -0.94 16 26 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 29 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.42 -4.55 6.63 -92.71 -0.62 -5.16 16 31 H 0.17 -0.86 7.06 -2.91 -0.02 -0.88 16 32 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 33 H 0.40 -5.05 8.42 -74.06 -0.62 -5.68 16 34 H -0.25 0.09 5.26 99.48 0.52 0.61 16 35 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 36 H 0.18 -2.35 6.41 -2.91 -0.02 -2.37 16 37 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -21.47 340.71 3.01 -18.47 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -0.29 Total: -18.13 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 3.94 Total: 7.57 kcal Atomic # 7 Polarization: 2.51 SS G_CDS: -2.24 Total: 0.27 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -1.79 Total: -7.19 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 1.27 Total: 0.32 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.11 Total: -1.30 kcal Total: -21.47 3.01 -18.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_12360598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.829 kcal (2) G-P(sol) polarization free energy of solvation -21.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds