Wall clock time and date at job start Tue Mar 9 2021 13:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47189 * 304.87436 * 3 2 1 5 5 C 1.52995 * 109.47166 * 64.88057 * 3 2 1 6 6 C 1.53000 * 109.47223 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47253 * 299.99574 * 6 5 3 8 8 H 1.08994 * 109.47062 * 300.00266 * 7 6 5 9 9 N 1.46498 * 109.47431 * 179.97438 * 7 6 5 10 10 C 1.34778 * 119.99788 * 85.00114 * 9 7 6 11 11 O 1.21589 * 119.99834 * 0.02562 * 10 9 7 12 12 C 1.47538 * 120.00057 * 180.02562 * 10 9 7 13 13 C 1.40131 * 120.19052 * 180.02562 * 12 10 9 14 14 O 1.35650 * 120.15314 * 359.95577 * 13 12 10 15 15 C 1.42903 * 117.00294 * 180.02562 * 14 13 12 16 16 C 1.38715 * 119.69725 * 179.97438 * 13 12 10 17 17 C 1.38052 * 120.08458 * 359.97438 * 16 13 12 18 18 C 1.38553 * 120.39122 * 0.02562 * 17 16 13 19 19 C 1.50696 * 119.85229 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.46760 * 120.02287 * 19 18 17 21 21 Si 1.86299 * 109.46978 * 0.02895 * 19 18 17 22 22 C 1.37783 * 120.29898 * 0.02562 * 18 17 16 23 23 C 1.53002 * 109.46807 * 59.99619 * 7 6 5 24 24 C 1.53000 * 109.47370 * 300.00576 * 23 7 6 25 25 H 4.18736 * 15.04040 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.47105 * 299.99295 * 5 3 2 27 27 H 1.09002 * 109.47574 * 59.99615 * 5 3 2 28 28 H 1.09003 * 109.47442 * 179.97438 * 6 5 3 29 29 H 1.09002 * 109.47150 * 59.99368 * 6 5 3 30 30 H 0.96994 * 120.00244 * 265.00438 * 9 7 6 31 31 H 1.08997 * 109.47017 * 59.99578 * 15 14 13 32 32 H 1.08997 * 109.47296 * 179.97438 * 15 14 13 33 33 H 1.09001 * 109.46893 * 300.00255 * 15 14 13 34 34 H 1.08005 * 119.95347 * 179.72633 * 16 13 12 35 35 H 1.08000 * 119.80547 * 179.97438 * 17 16 13 36 36 H 1.08995 * 109.47558 * 240.02765 * 19 18 17 37 37 H 0.96702 * 114.00063 * 180.02562 * 20 19 18 38 38 H 1.48498 * 110.00416 * 59.99269 * 21 19 18 39 39 H 1.48497 * 110.00286 * 181.31687 * 21 19 18 40 40 H 1.07999 * 120.04733 * 179.97438 * 22 18 17 41 41 H 1.09007 * 109.46805 * 60.00173 * 23 7 6 42 42 H 1.08998 * 109.46974 * 179.97438 * 23 7 6 43 43 H 1.09000 * 109.46788 * 180.02562 * 24 23 7 44 44 H 1.09000 * 109.46981 * 299.99259 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.5868 0.8431 5 6 3.1563 -0.6114 -1.3060 6 6 4.6862 -0.6102 -1.3063 7 6 5.1951 0.8276 -1.1840 8 1 4.8311 1.4147 -2.0270 9 7 6.6601 0.8288 -1.1837 10 6 7.3342 0.8265 -2.3507 11 8 6.7265 0.8239 -3.4038 12 6 8.8096 0.8271 -2.3505 13 6 9.5145 0.8253 -3.5616 14 8 8.8436 0.8220 -4.7405 15 6 9.6292 0.8197 -5.9342 16 6 10.9016 0.8264 -3.5494 17 6 11.5831 0.8299 -2.3488 18 6 10.8898 0.8317 -1.1492 19 6 11.6460 0.8350 0.1543 20 8 11.3009 2.0027 0.9022 21 14 13.4769 0.8367 -0.1900 22 6 9.5119 0.8296 -1.1427 23 6 4.6848 1.4398 0.1220 24 6 3.1548 1.4384 0.1223 25 1 -1.0500 0.0000 0.0008 26 1 2.7935 -1.6356 -1.3934 27 1 2.7926 -0.0240 -2.1491 28 1 5.0498 -1.0467 -2.2366 29 1 5.0502 -1.1974 -0.4632 30 1 7.1449 0.8312 -0.3436 31 1 10.2588 -0.0698 -5.9530 32 1 8.9706 0.8167 -6.8027 33 1 10.2576 1.7101 -5.9572 34 1 11.4491 0.8206 -4.4803 35 1 12.6631 0.8304 -2.3445 36 1 11.3850 -0.0543 0.7280 37 1 11.7518 2.0711 1.7549 38 1 13.8456 2.0441 -0.9718 39 1 14.2339 0.8078 1.0872 40 1 8.9756 0.8306 -0.2053 41 1 5.0488 0.8525 0.9652 42 1 5.0476 2.4638 0.2094 43 1 2.7913 1.8750 1.0526 44 1 2.7908 2.0257 -0.7207 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_12496546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:04 Heat of formation + Delta-G solvation = -24.702068 kcal Electronic energy + Delta-G solvation = -26241.460078 eV Core-core repulsion = 22513.062012 eV Total energy + Delta-G solvation = -3728.398066 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80844 -40.62457 -39.21378 -39.08508 -37.29239 -35.85158 -33.75461 -32.56964 -31.92011 -31.85474 -29.93017 -28.49138 -26.10050 -25.50277 -23.85960 -23.77713 -22.32211 -21.47780 -20.99670 -19.44752 -19.04663 -18.54673 -18.11963 -17.78910 -16.94723 -16.82900 -16.33867 -16.03099 -15.89940 -15.77127 -15.66149 -15.32752 -15.18656 -14.77291 -14.57497 -14.07385 -14.01603 -13.90241 -13.80716 -13.47710 -13.25580 -12.99690 -12.74463 -12.49881 -12.39434 -12.26763 -12.16858 -12.01062 -11.92588 -11.76688 -11.62870 -11.02076 -10.93308 -10.86674 -10.45189 -10.26244 -10.00362 -9.26392 -4.89684 -0.25517 0.22788 1.33274 1.63107 1.78356 1.86229 1.89452 1.98723 2.08955 2.27636 2.67058 3.36969 3.37734 3.55819 3.62759 3.69332 3.74217 3.83447 4.05170 4.07737 4.12477 4.19194 4.22457 4.29730 4.35667 4.36346 4.38996 4.42081 4.45905 4.56189 4.67416 4.69409 4.73030 4.74549 4.92232 5.01062 5.04576 5.09688 5.11517 5.11765 5.22159 5.29285 5.30780 5.36589 5.50963 5.56831 6.30804 6.54190 6.64199 6.69446 7.23837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.210 4.210 3 C 0.021 3.979 4 H 0.108 0.892 5 C -0.103 4.103 6 C -0.120 4.120 7 C 0.146 3.854 8 H 0.062 0.938 9 N -0.713 5.713 10 C 0.557 3.443 11 O -0.564 6.564 12 C -0.197 4.197 13 C 0.169 3.831 14 O -0.313 6.313 15 C 0.011 3.989 16 C -0.212 4.212 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.075 4.075 20 O -0.557 6.557 21 Si 0.755 3.245 22 C -0.016 4.016 23 C -0.116 4.116 24 C -0.103 4.103 25 H 0.238 0.762 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.412 0.588 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.396 0.604 38 H -0.299 1.299 39 H -0.288 1.288 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -2.873 3.972 7.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.210 4.210 3 C 0.003 3.997 4 H 0.126 0.874 5 C -0.141 4.141 6 C -0.159 4.159 7 C 0.042 3.958 8 H 0.081 0.919 9 N -0.365 5.365 10 C 0.346 3.654 11 O -0.443 6.443 12 C -0.201 4.201 13 C 0.121 3.879 14 O -0.224 6.224 15 C -0.083 4.083 16 C -0.231 4.231 17 C -0.063 4.063 18 C -0.130 4.130 19 C -0.184 4.184 20 O -0.367 6.367 21 Si 0.661 3.339 22 C -0.035 4.035 23 C -0.154 4.154 24 C -0.141 4.141 25 H 0.254 0.746 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.121 0.879 37 H 0.247 0.753 38 H -0.227 1.227 39 H -0.215 1.215 40 H 0.171 0.829 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.741 -2.354 2.763 5.970 hybrid contribution -0.291 0.779 0.873 1.206 sum 4.450 -1.575 3.636 5.958 Atomic orbital electron populations 1.25683 0.96969 1.00106 1.00256 1.23589 0.95226 1.01122 1.01056 1.18435 0.83672 0.98151 0.99404 0.87437 1.21446 0.94806 1.01332 0.96512 1.21839 0.95004 0.96572 1.02483 1.20985 0.78749 0.96670 0.99401 0.91946 1.45859 1.07195 1.75182 1.08300 1.18280 0.87332 0.75845 0.83953 1.90808 1.70347 1.50709 1.32438 1.19434 0.92628 1.15425 0.92616 1.19410 0.91198 0.91596 0.85720 1.86335 1.36393 1.86601 1.13110 1.23446 0.97501 1.02852 0.84518 1.21446 0.91616 1.09031 1.00967 1.21229 1.00646 0.93387 0.91026 1.19310 0.93557 1.05920 0.94244 1.24841 1.10261 0.90938 0.92335 1.86541 1.69961 1.43853 1.36355 0.94300 0.72351 0.86355 0.80873 1.21114 0.93853 0.92433 0.96083 1.21763 0.95164 1.02281 0.96201 1.21462 0.94768 0.94798 1.03093 0.74568 0.91080 0.92711 0.93269 0.89630 0.75047 0.90554 0.87455 0.91135 0.81917 0.82780 0.87916 0.75329 1.22659 1.21505 0.82947 0.88730 0.90226 0.89969 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.72 19.25 74.32 1.43 0.71 16 2 C -0.21 -0.97 12.56 31.12 0.39 -0.58 16 3 C 0.02 0.01 2.57 -12.60 -0.03 -0.02 16 4 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 5 C -0.10 -0.22 5.16 30.59 0.16 -0.06 16 6 C -0.12 -0.24 5.49 30.60 0.17 -0.08 16 7 C 0.15 0.33 2.45 44.99 0.11 0.44 16 8 H 0.06 0.52 7.58 -2.39 -0.02 0.50 16 9 N -0.71 -1.63 5.03 -445.70 -2.24 -3.87 16 10 C 0.56 5.57 7.73 86.70 0.67 6.24 16 11 O -0.56 -10.55 14.82 16.92 0.25 -10.30 16 12 C -0.20 -1.33 5.89 -20.01 -0.12 -1.44 16 13 C 0.17 1.19 6.70 22.84 0.15 1.34 16 14 O -0.31 -3.12 8.57 -68.74 -0.59 -3.70 16 15 C 0.01 0.00 9.81 113.37 1.11 1.11 16 16 C -0.21 -0.12 9.03 22.34 0.20 0.08 16 17 C -0.05 0.07 8.66 22.30 0.19 0.26 16 18 C -0.13 0.07 5.42 -19.90 -0.11 -0.04 16 19 C -0.07 0.33 2.81 71.23 0.20 0.53 16 20 O -0.56 1.08 12.74 -148.98 -1.90 -0.81 16 21 Si 0.76 -3.70 29.77 68.60 2.04 -1.66 16 22 C -0.02 -0.01 9.09 22.52 0.20 0.19 16 23 C -0.12 0.38 5.39 30.59 0.16 0.54 16 24 C -0.10 0.12 5.16 30.59 0.16 0.27 16 25 H 0.24 -0.71 7.80 -4.42 -0.03 -0.74 16 26 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 27 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.41 -1.64 6.63 -92.71 -0.61 -2.25 16 31 H 0.08 -0.31 7.66 -2.39 -0.02 -0.33 16 32 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.07 -0.22 7.67 -2.39 -0.02 -0.24 16 34 H 0.16 -0.79 6.30 -2.91 -0.02 -0.81 16 35 H 0.16 -0.99 4.85 -2.91 -0.01 -1.01 16 36 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 37 H 0.40 -3.79 8.74 -74.06 -0.65 -4.44 16 38 H -0.30 -0.78 7.11 99.48 0.71 -0.08 16 39 H -0.29 0.07 7.11 99.48 0.71 0.78 16 40 H 0.15 -0.63 6.40 -2.91 -0.02 -0.65 16 41 H 0.09 -0.69 8.14 -2.38 -0.02 -0.70 16 42 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -24.52 361.30 2.42 -22.10 By element: Atomic # 1 Polarization: -11.05 SS G_CDS: -0.20 Total: -11.25 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.06 Total: 9.51 kcal Atomic # 7 Polarization: -1.63 SS G_CDS: -2.24 Total: -3.87 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -2.24 Total: -14.82 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.04 Total: -1.66 kcal Total: -24.52 2.42 -22.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_12496546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.601 kcal (2) G-P(sol) polarization free energy of solvation -24.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds