Wall clock time and date at job start Tue Mar 9 2021 13:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09007 * 109.47157 * 286.31451 * 3 2 1 5 5 C 1.53000 * 109.47280 * 46.30910 * 3 2 1 6 6 C 1.53000 * 109.47612 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46793 * 300.00550 * 6 5 3 8 8 H 1.09002 * 109.46812 * 299.99608 * 7 6 5 9 9 N 1.46504 * 109.46946 * 179.97438 * 7 6 5 10 10 C 1.34780 * 120.00119 * 84.99828 * 9 7 6 11 11 O 1.21565 * 119.99775 * 359.97438 * 10 9 7 12 12 C 1.47718 * 119.99750 * 180.02562 * 10 9 7 13 13 C 1.39632 * 120.11527 * 180.30022 * 12 10 9 14 14 C 1.37864 * 119.87885 * 180.29377 * 13 12 10 15 15 C 1.50697 * 119.94345 * 179.71793 * 14 13 12 16 16 O 1.42898 * 109.47008 * 14.98065 * 15 14 13 17 17 Si 1.86297 * 109.47115 * 134.97788 * 15 14 13 18 18 C 1.38632 * 120.11818 * 359.69923 * 14 13 12 19 19 F 1.35096 * 119.88224 * 180.02562 * 18 14 13 20 20 C 1.38683 * 120.23886 * 359.97438 * 18 14 13 21 21 C 1.37819 * 120.11763 * 0.02562 * 20 18 14 22 22 C 1.53002 * 109.47603 * 59.99750 * 7 6 5 23 23 C 1.52994 * 109.47302 * 166.31073 * 3 2 1 24 24 H 4.18743 * 15.03988 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.47347 * 300.00368 * 5 3 2 26 26 H 1.09002 * 109.46904 * 59.99870 * 5 3 2 27 27 H 1.08995 * 109.47574 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.47121 * 59.99968 * 6 5 3 29 29 H 0.96997 * 119.99463 * 264.99742 * 9 7 6 30 30 H 1.08002 * 120.06381 * 0.02562 * 13 12 10 31 31 H 1.09001 * 109.47296 * 254.98020 * 15 14 13 32 32 H 0.96703 * 114.00555 * 179.97438 * 16 15 14 33 33 H 1.48496 * 110.00132 * 178.68414 * 17 15 14 34 34 H 1.48502 * 110.00449 * 300.00367 * 17 15 14 35 35 H 1.07999 * 119.94164 * 180.02562 * 20 18 14 36 36 H 1.08002 * 120.05681 * 180.02562 * 21 20 18 37 37 H 1.09000 * 109.46875 * 59.99339 * 22 7 6 38 38 H 1.08996 * 109.46915 * 180.02562 * 22 7 6 39 39 H 1.08999 * 109.47252 * 59.99751 * 23 3 2 40 40 H 1.08995 * 109.47214 * 299.99900 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2879 0.9863 5 6 3.1565 -0.9955 -1.0430 6 6 4.6865 -0.9954 -1.0426 7 6 5.1963 0.4063 -1.3836 8 1 4.8332 0.6950 -2.3700 9 7 6.6614 0.4067 -1.3826 10 6 7.3361 0.0328 -2.4879 11 8 6.7290 -0.3051 -3.4854 12 6 8.8133 0.0327 -2.4867 13 6 9.5148 -0.3482 -3.6323 14 6 10.8934 -0.3523 -3.6239 15 6 11.6519 -0.7692 -4.8575 16 8 10.7688 -0.7735 -5.9809 17 14 13.0432 0.4307 -5.1660 18 6 11.5832 0.0266 -2.4826 19 9 12.9341 0.0212 -2.4797 20 6 10.8914 0.4122 -1.3441 21 6 9.5132 0.4200 -1.3418 22 6 4.6859 1.4025 -0.3405 23 6 3.1554 1.4023 -0.3414 24 1 -1.0500 0.0004 0.0004 25 1 2.7936 -1.9942 -0.7999 26 1 2.7930 -0.7071 -2.0293 27 1 5.0501 -1.7047 -1.7860 28 1 5.0496 -1.2841 -0.0563 29 1 7.1457 0.6759 -0.5866 30 1 8.9784 -0.6431 -4.5222 31 1 12.0601 -1.7694 -4.7124 32 1 11.1904 -1.0325 -6.8117 33 1 13.8185 0.0129 -6.3616 34 1 12.4999 1.7983 -5.3654 35 1 11.4336 0.7069 -0.4578 36 1 8.9755 0.7209 -0.4548 37 1 5.0490 1.1137 0.6458 38 1 5.0488 2.4011 -0.5838 39 1 2.7917 2.1121 0.4017 40 1 2.7920 1.6908 -1.3276 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12865462_12496548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:08 Heat of formation + Delta-G solvation = -38.990720 kcal Electronic energy + Delta-G solvation = -24076.236906 eV Core-core repulsion = 20351.985073 eV Total energy + Delta-G solvation = -3724.251833 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.34635 -41.49382 -40.18353 -39.06608 -37.76469 -35.89246 -33.76516 -32.83069 -31.98742 -31.91213 -29.93465 -27.06992 -25.38194 -23.86590 -23.57353 -23.21064 -21.44202 -21.05715 -19.17368 -19.06396 -18.78215 -18.34714 -17.65166 -17.14073 -16.72227 -16.41673 -16.11692 -15.96779 -15.84574 -15.47900 -15.25742 -15.08667 -14.96263 -14.42481 -14.24161 -14.07410 -14.00296 -13.89918 -13.32520 -13.22812 -12.81551 -12.77089 -12.39257 -12.34800 -12.23940 -11.92887 -11.86641 -11.66198 -11.09327 -11.00035 -10.92784 -10.86205 -10.16177 -9.99733 -9.70790 -4.78564 -0.49306 0.01593 1.20008 1.56443 1.71291 1.93101 1.94775 1.96158 2.02672 2.62473 2.80074 3.02775 3.33577 3.38635 3.53029 3.61611 3.67510 3.72205 3.91829 4.03299 4.07803 4.12342 4.16972 4.26767 4.32877 4.35584 4.38061 4.52959 4.61712 4.65321 4.76101 4.83580 4.91976 4.97849 5.03750 5.07064 5.09546 5.11506 5.18208 5.24208 5.32162 5.43988 5.59430 6.34859 6.42257 6.74591 7.17051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.020 3.980 4 H 0.093 0.907 5 C -0.108 4.108 6 C -0.129 4.129 7 C 0.144 3.856 8 H 0.092 0.908 9 N -0.723 5.723 10 C 0.562 3.438 11 O -0.528 6.528 12 C -0.145 4.145 13 C -0.009 4.009 14 C -0.116 4.116 15 C -0.075 4.075 16 O -0.536 6.536 17 Si 0.673 3.327 18 C 0.120 3.880 19 F -0.105 7.105 20 C -0.150 4.150 21 C -0.061 4.061 22 C -0.126 4.126 23 C -0.107 4.107 24 H 0.217 0.783 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.399 0.601 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.386 0.614 33 H -0.253 1.253 34 H -0.251 1.251 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 0.519 5.049 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.186 4.186 3 C 0.002 3.998 4 H 0.111 0.889 5 C -0.146 4.146 6 C -0.168 4.168 7 C 0.039 3.961 8 H 0.111 0.889 9 N -0.375 5.375 10 C 0.349 3.651 11 O -0.404 6.404 12 C -0.148 4.148 13 C -0.028 4.028 14 C -0.117 4.117 15 C -0.183 4.183 16 O -0.343 6.343 17 Si 0.571 3.429 18 C 0.100 3.900 19 F -0.083 7.083 20 C -0.169 4.169 21 C -0.080 4.080 22 C -0.164 4.164 23 C -0.145 4.145 24 H 0.234 0.766 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.235 0.765 30 H 0.173 0.827 31 H 0.104 0.896 32 H 0.234 0.766 33 H -0.178 1.178 34 H -0.175 1.175 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.791 1.048 4.215 4.698 hybrid contribution -0.267 -0.443 -0.530 0.741 sum 1.523 0.605 3.684 4.032 Atomic orbital electron populations 1.24982 0.96013 1.00298 1.00717 1.22994 0.94235 1.00779 1.00618 1.18371 0.84490 0.96403 1.00555 0.88908 1.21517 0.94758 0.99182 0.99142 1.21938 0.95251 0.97036 1.02549 1.21076 0.78577 0.95496 1.00906 0.88950 1.45974 1.07362 1.68876 1.15291 1.18126 0.86830 0.77053 0.83102 1.90822 1.69689 1.46980 1.32947 1.20026 0.93328 1.05978 0.95512 1.20982 0.91952 0.92056 0.97790 1.19321 0.94576 1.03996 0.93766 1.24549 1.00105 1.07563 0.86127 1.86486 1.37540 1.91740 1.18533 0.94815 0.81601 0.78705 0.87744 1.17588 0.76776 1.00787 0.94804 1.91186 1.28623 1.93858 1.94678 1.21030 0.94597 1.03339 0.97889 1.21169 0.93504 0.96017 0.97286 1.21834 0.95983 0.99500 0.99116 1.21504 0.94204 0.95713 1.03058 0.76622 0.90996 0.91085 0.90779 0.91336 0.76511 0.82725 0.89626 0.76554 1.17775 1.17519 0.83226 0.84394 0.90883 0.90606 0.90740 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.24 19.25 29.55 0.57 0.33 16 2 C -0.19 -0.29 12.56 -37.12 -0.47 -0.76 16 3 C 0.02 -0.01 2.56 -93.41 -0.24 -0.25 16 4 H 0.09 -0.13 8.14 -51.92 -0.42 -0.56 16 5 C -0.11 0.03 5.16 -26.73 -0.14 -0.11 16 6 C -0.13 0.07 5.50 -26.73 -0.15 -0.08 16 7 C 0.14 -0.10 2.45 -67.93 -0.17 -0.27 16 8 H 0.09 0.14 7.58 -51.93 -0.39 -0.26 16 9 N -0.72 0.75 5.03 -54.78 -0.28 0.48 16 10 C 0.56 1.25 7.73 -12.39 -0.10 1.15 16 11 O -0.53 -3.30 16.01 5.31 0.08 -3.22 16 12 C -0.15 -0.14 5.87 -104.97 -0.62 -0.76 16 13 C -0.01 -0.02 8.91 -39.20 -0.35 -0.37 16 14 C -0.12 -0.15 5.15 -104.61 -0.54 -0.68 16 15 C -0.07 -0.03 2.95 36.00 0.11 0.08 16 16 O -0.54 -0.66 11.48 -35.23 -0.40 -1.07 16 17 Si 0.67 0.19 29.57 -169.99 -5.03 -4.83 16 18 C 0.12 -0.03 6.67 -39.27 -0.26 -0.29 16 19 F -0.11 0.10 13.70 2.25 0.03 0.13 16 20 C -0.15 0.29 10.01 -39.57 -0.40 -0.11 16 21 C -0.06 0.12 9.54 -39.20 -0.37 -0.25 16 22 C -0.13 0.33 5.39 -26.70 -0.14 0.19 16 23 C -0.11 0.16 5.16 -26.71 -0.14 0.02 16 24 H 0.22 -0.37 7.80 -54.09 -0.42 -0.79 16 25 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 28 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.40 -1.61 6.63 -40.82 -0.27 -1.88 16 30 H 0.16 0.63 6.72 -52.49 -0.35 0.28 16 31 H 0.09 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.39 -1.05 8.74 45.56 0.40 -0.65 16 33 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 34 H -0.25 -0.93 7.11 56.52 0.40 -0.52 16 35 H 0.15 -0.66 8.06 -52.49 -0.42 -1.08 16 36 H 0.14 -0.73 6.40 -52.49 -0.34 -1.07 16 37 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 38 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 39 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 LS Contribution 338.03 15.07 5.09 5.09 Total: 0.00 -7.58 338.03 -9.11 -16.69 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: -5.21 Total: -11.12 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.40 Total: -2.15 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -0.28 Total: 0.48 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.32 Total: -4.28 kcal Atomic # 9 Polarization: 0.10 SS G_CDS: 0.03 Total: 0.13 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: -5.03 Total: -4.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -7.58 -9.11 -16.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_12496548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -7.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds